data_2GF4
#
_model_server_result.job_id            jAgJ385gDKPCkNoAKB9fdQ 
_model_server_result.datetime_utc      '2024-10-10 06:28:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2gf4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    2GF4 
#
_exptl.entry_id    2GF4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2GF4 
_cell.length_a            57.669 
_cell.length_b            64.914 
_cell.length_c            123.945 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2GF4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 64.914 123.945 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C MSE 1 A MSE 1 1_555 A N HIS 2 A HIS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 A C GLN 12 A GLN 12 1_555 A N MSE 13 A MSE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale3 A C MSE 13 A MSE 13 1_555 A N VAL 14 A VAL 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale4 A C ALA 65 A ALA 65 1_555 A N MSE 66 A MSE 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale5 A C MSE 66 A MSE 66 1_555 A N SER 67 A SER 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale6 A C ARG 80 A ARG 80 1_555 A N MSE 81 A MSE 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale7 A C MSE 81 A MSE 81 1_555 A N GLU 82 A GLU 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
metalc ? metalc1 C CA CA . A CA 202 1_555 A OD1 ASP 38 A ASP 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? 
metalc ? metalc2 C CA CA . A CA 202 1_555 A OE2 GLU 40 A GLU 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc3 C CA CA . A CA 202 1_555 G O HOH . A HOH 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? 
metalc ? metalc4 C CA CA . A CA 202 1_555 G O HOH . A HOH 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? 
metalc ? metalc5 C CA CA . A CA 202 1_555 G O HOH . A HOH 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? 
covale ? covale8 B C MSE 1 B MSE 1 1_555 B N HIS 2 B HIS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale9 B C GLN 12 B GLN 12 1_555 B N MSE 13 B MSE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale10 B C MSE 13 B MSE 13 1_555 B N VAL 14 B VAL 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale11 B C ALA 65 B ALA 65 1_555 B N MSE 66 B MSE 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale12 B C MSE 66 B MSE 66 1_555 B N SER 67 B SER 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
metalc ? metalc6 D CA CA . B CA 201 1_555 B OD1 ASP 38 B ASP 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc7 D CA CA . B CA 201 1_555 B OE2 GLU 40 B GLU 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
metalc ? metalc8 D CA CA . B CA 201 1_555 H O HOH . B HOH 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? 
metalc ? metalc9 D CA CA . B CA 201 1_555 H O HOH . B HOH 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? 
metalc ? metalc10 D CA CA . B CA 201 1_555 H O HOH . B HOH 824 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? 
metalc ? metalc11 C CA CA . A CA 202 1_555 B OE2 GLU 40 B GLU 40 8_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? 
metalc ? metalc12 C CA CA . A CA 202 1_555 B OE1 GLU 40 B GLU 40 8_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? 
metalc ? metalc13 D CA CA . B CA 201 1_555 A OE1 GLU 40 A GLU 40 8_456 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? 
metalc ? metalc14 D CA CA . B CA 201 1_555 A OE2 GLU 40 A GLU 40 8_456 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2GF4 
_atom_sites.fract_transf_matrix[1][1]    0.01734 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015405 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008068 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CA A 1 202 202 CA CA . 
D 2 CA B 1 201 201 CA CA . 
E 3 ACT B 1 801 801 ACT ACT . 
F 3 ACT B 1 802 802 ACT ACT . 
G 4 HOH A 1 203 3 HOH HOH . 
G 4 HOH A 2 204 4 HOH HOH . 
G 4 HOH A 3 205 6 HOH HOH . 
G 4 HOH A 4 206 10 HOH HOH . 
G 4 HOH A 5 207 11 HOH HOH . 
G 4 HOH A 6 208 17 HOH HOH . 
G 4 HOH A 7 209 19 HOH HOH . 
G 4 HOH A 8 210 20 HOH HOH . 
G 4 HOH A 9 211 21 HOH HOH . 
G 4 HOH A 10 212 24 HOH HOH . 
G 4 HOH A 11 213 25 HOH HOH . 
G 4 HOH A 12 214 28 HOH HOH . 
G 4 HOH A 13 215 30 HOH HOH . 
G 4 HOH A 14 216 32 HOH HOH . 
G 4 HOH A 15 217 33 HOH HOH . 
G 4 HOH A 16 218 34 HOH HOH . 
G 4 HOH A 17 219 36 HOH HOH . 
G 4 HOH A 18 220 37 HOH HOH . 
G 4 HOH A 19 221 39 HOH HOH . 
G 4 HOH A 20 222 40 HOH HOH . 
G 4 HOH A 21 223 42 HOH HOH . 
G 4 HOH A 22 224 44 HOH HOH . 
G 4 HOH A 23 225 46 HOH HOH . 
G 4 HOH A 24 226 49 HOH HOH . 
G 4 HOH A 25 227 50 HOH HOH . 
G 4 HOH A 26 228 51 HOH HOH . 
G 4 HOH A 27 229 53 HOH HOH . 
G 4 HOH A 28 230 54 HOH HOH . 
G 4 HOH A 29 231 55 HOH HOH . 
G 4 HOH A 30 232 60 HOH HOH . 
G 4 HOH A 31 233 63 HOH HOH . 
G 4 HOH A 32 234 64 HOH HOH . 
G 4 HOH A 33 235 65 HOH HOH . 
G 4 HOH A 34 236 66 HOH HOH . 
G 4 HOH A 35 237 69 HOH HOH . 
G 4 HOH A 36 238 70 HOH HOH . 
G 4 HOH A 37 239 73 HOH HOH . 
G 4 HOH A 38 240 74 HOH HOH . 
G 4 HOH A 39 241 75 HOH HOH . 
G 4 HOH A 40 242 77 HOH HOH . 
G 4 HOH A 41 243 80 HOH HOH . 
G 4 HOH A 42 244 81 HOH HOH . 
G 4 HOH A 43 245 83 HOH HOH . 
G 4 HOH A 44 246 84 HOH HOH . 
G 4 HOH A 45 247 85 HOH HOH . 
G 4 HOH A 46 248 89 HOH HOH . 
G 4 HOH A 47 249 93 HOH HOH . 
G 4 HOH A 48 250 94 HOH HOH . 
G 4 HOH A 49 251 95 HOH HOH . 
G 4 HOH A 50 252 96 HOH HOH . 
G 4 HOH A 51 253 99 HOH HOH . 
G 4 HOH A 52 254 101 HOH HOH . 
G 4 HOH A 53 255 106 HOH HOH . 
G 4 HOH A 54 256 109 HOH HOH . 
G 4 HOH A 55 257 111 HOH HOH . 
G 4 HOH A 56 258 112 HOH HOH . 
G 4 HOH A 57 259 114 HOH HOH . 
G 4 HOH A 58 260 115 HOH HOH . 
G 4 HOH A 59 261 116 HOH HOH . 
G 4 HOH A 60 262 117 HOH HOH . 
G 4 HOH A 61 263 119 HOH HOH . 
G 4 HOH A 62 264 120 HOH HOH . 
G 4 HOH A 63 265 121 HOH HOH . 
G 4 HOH A 64 266 125 HOH HOH . 
G 4 HOH A 65 267 126 HOH HOH . 
G 4 HOH A 66 268 128 HOH HOH . 
G 4 HOH A 67 269 131 HOH HOH . 
G 4 HOH A 68 270 134 HOH HOH . 
G 4 HOH A 69 271 136 HOH HOH . 
G 4 HOH A 70 272 137 HOH HOH . 
G 4 HOH A 71 273 139 HOH HOH . 
G 4 HOH A 72 274 140 HOH HOH . 
G 4 HOH A 73 275 144 HOH HOH . 
G 4 HOH A 74 276 145 HOH HOH . 
G 4 HOH A 75 277 146 HOH HOH . 
G 4 HOH A 76 278 148 HOH HOH . 
G 4 HOH A 77 279 150 HOH HOH . 
G 4 HOH A 78 280 152 HOH HOH . 
G 4 HOH A 79 281 154 HOH HOH . 
G 4 HOH A 80 282 155 HOH HOH . 
H 4 HOH B 1 803 1 HOH HOH . 
H 4 HOH B 2 804 2 HOH HOH . 
H 4 HOH B 3 805 5 HOH HOH . 
H 4 HOH B 4 806 7 HOH HOH . 
H 4 HOH B 5 807 8 HOH HOH . 
H 4 HOH B 6 808 9 HOH HOH . 
H 4 HOH B 7 809 12 HOH HOH . 
H 4 HOH B 8 810 13 HOH HOH . 
H 4 HOH B 9 811 14 HOH HOH . 
H 4 HOH B 10 812 15 HOH HOH . 
H 4 HOH B 11 813 16 HOH HOH . 
H 4 HOH B 12 814 18 HOH HOH . 
H 4 HOH B 13 815 22 HOH HOH . 
H 4 HOH B 14 816 23 HOH HOH . 
H 4 HOH B 15 817 26 HOH HOH . 
H 4 HOH B 16 818 27 HOH HOH . 
H 4 HOH B 17 819 29 HOH HOH . 
H 4 HOH B 18 820 31 HOH HOH . 
H 4 HOH B 19 821 35 HOH HOH . 
H 4 HOH B 20 822 38 HOH HOH . 
H 4 HOH B 21 823 41 HOH HOH . 
H 4 HOH B 22 824 43 HOH HOH . 
H 4 HOH B 23 825 45 HOH HOH . 
H 4 HOH B 24 826 47 HOH HOH . 
H 4 HOH B 25 827 52 HOH HOH . 
H 4 HOH B 26 828 56 HOH HOH . 
H 4 HOH B 27 829 57 HOH HOH . 
H 4 HOH B 28 830 58 HOH HOH . 
H 4 HOH B 29 831 59 HOH HOH . 
H 4 HOH B 30 832 61 HOH HOH . 
H 4 HOH B 31 833 62 HOH HOH . 
H 4 HOH B 32 834 67 HOH HOH . 
H 4 HOH B 33 835 68 HOH HOH . 
H 4 HOH B 34 836 71 HOH HOH . 
H 4 HOH B 35 837 72 HOH HOH . 
H 4 HOH B 36 838 76 HOH HOH . 
H 4 HOH B 37 839 79 HOH HOH . 
H 4 HOH B 38 840 82 HOH HOH . 
H 4 HOH B 39 841 88 HOH HOH . 
H 4 HOH B 40 842 90 HOH HOH . 
H 4 HOH B 41 843 91 HOH HOH . 
H 4 HOH B 42 844 92 HOH HOH . 
H 4 HOH B 43 845 97 HOH HOH . 
H 4 HOH B 44 846 98 HOH HOH . 
H 4 HOH B 45 847 100 HOH HOH . 
H 4 HOH B 46 848 102 HOH HOH . 
H 4 HOH B 47 849 107 HOH HOH . 
H 4 HOH B 48 850 108 HOH HOH . 
H 4 HOH B 49 851 110 HOH HOH . 
H 4 HOH B 50 852 113 HOH HOH . 
H 4 HOH B 51 853 118 HOH HOH . 
H 4 HOH B 52 854 122 HOH HOH . 
H 4 HOH B 53 855 123 HOH HOH . 
H 4 HOH B 54 856 124 HOH HOH . 
H 4 HOH B 55 857 127 HOH HOH . 
H 4 HOH B 56 858 129 HOH HOH . 
H 4 HOH B 57 859 130 HOH HOH . 
H 4 HOH B 58 860 132 HOH HOH . 
H 4 HOH B 59 861 133 HOH HOH . 
H 4 HOH B 60 862 138 HOH HOH . 
H 4 HOH B 61 863 141 HOH HOH . 
H 4 HOH B 62 864 142 HOH HOH . 
H 4 HOH B 63 865 143 HOH HOH . 
H 4 HOH B 64 866 147 HOH HOH . 
H 4 HOH B 65 867 149 HOH HOH . 
H 4 HOH B 66 868 151 HOH HOH . 
H 4 HOH B 67 869 153 HOH HOH . 
H 4 HOH B 68 870 156 HOH HOH . 
H 4 HOH B 69 871 157 HOH HOH . 
H 4 HOH B 70 872 158 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -7.663 
_atom_site.Cartn_y               16.384 
_atom_site.Cartn_z               70.764 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        23.37 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           201 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           261 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#