data_2GFH # _model_server_result.job_id LKfOSWFLR7QuZBsCc4vQ4A _model_server_result.datetime_utc '2025-06-20 09:24:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2gfh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":252}' # _entry.id 2GFH # _exptl.entry_id 2GFH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2GFH _cell.length_a 71.259 _cell.length_b 71.259 _cell.length_c 195.632 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2GFH _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_555 x,x-y,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 32.605333 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 24 A ASP 12 1_555 B NA NA . A NA 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? metalc ? metalc2 A O ASP 26 A ASP 14 1_555 B NA NA . A NA 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc3 A OD1 ASP 201 A ASP 189 1_555 B NA NA . A NA 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc4 B NA NA . A NA 249 1_555 D O3 PO4 . A PO4 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc5 B NA NA . A NA 249 1_555 F O HOH . A HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc6 B NA NA . A NA 249 1_555 F O HOH . A HOH 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 2GFH _atom_sites.fract_transf_matrix[1][1] 0.014033 _atom_sites.fract_transf_matrix[1][2] 0.008102 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016204 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005112 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 249 1 NA NA . C 3 CL A 1 250 2 CL CL . D 4 PO4 A 1 251 3 PO4 PO4 . E 5 EDO A 1 252 4 EDO EDO . F 6 HOH A 1 253 5 HOH HOH . F 6 HOH A 2 254 6 HOH HOH . F 6 HOH A 3 255 7 HOH HOH . F 6 HOH A 4 256 8 HOH HOH . F 6 HOH A 5 257 9 HOH HOH . F 6 HOH A 6 258 10 HOH HOH . F 6 HOH A 7 259 11 HOH HOH . F 6 HOH A 8 260 12 HOH HOH . F 6 HOH A 9 261 13 HOH HOH . F 6 HOH A 10 262 14 HOH HOH . F 6 HOH A 11 263 15 HOH HOH . F 6 HOH A 12 264 16 HOH HOH . F 6 HOH A 13 265 17 HOH HOH . F 6 HOH A 14 266 18 HOH HOH . F 6 HOH A 15 267 19 HOH HOH . F 6 HOH A 16 268 20 HOH HOH . F 6 HOH A 17 269 21 HOH HOH . F 6 HOH A 18 270 22 HOH HOH . F 6 HOH A 19 271 23 HOH HOH . F 6 HOH A 20 272 24 HOH HOH . F 6 HOH A 21 273 25 HOH HOH . F 6 HOH A 22 274 26 HOH HOH . F 6 HOH A 23 275 27 HOH HOH . F 6 HOH A 24 276 28 HOH HOH . F 6 HOH A 25 277 29 HOH HOH . F 6 HOH A 26 278 30 HOH HOH . F 6 HOH A 27 279 31 HOH HOH . F 6 HOH A 28 280 32 HOH HOH . F 6 HOH A 29 281 33 HOH HOH . F 6 HOH A 30 282 34 HOH HOH . F 6 HOH A 31 283 35 HOH HOH . F 6 HOH A 32 284 36 HOH HOH . F 6 HOH A 33 285 37 HOH HOH . F 6 HOH A 34 286 38 HOH HOH . F 6 HOH A 35 287 39 HOH HOH . F 6 HOH A 36 288 40 HOH HOH . F 6 HOH A 37 289 41 HOH HOH . F 6 HOH A 38 290 42 HOH HOH . F 6 HOH A 39 291 43 HOH HOH . F 6 HOH A 40 292 44 HOH HOH . F 6 HOH A 41 293 45 HOH HOH . F 6 HOH A 42 294 46 HOH HOH . F 6 HOH A 43 295 47 HOH HOH . F 6 HOH A 44 296 48 HOH HOH . F 6 HOH A 45 297 49 HOH HOH . F 6 HOH A 46 298 50 HOH HOH . F 6 HOH A 47 299 51 HOH HOH . F 6 HOH A 48 300 52 HOH HOH . F 6 HOH A 49 301 53 HOH HOH . F 6 HOH A 50 302 54 HOH HOH . F 6 HOH A 51 303 55 HOH HOH . F 6 HOH A 52 304 56 HOH HOH . F 6 HOH A 53 305 57 HOH HOH . F 6 HOH A 54 306 58 HOH HOH . F 6 HOH A 55 307 59 HOH HOH . F 6 HOH A 56 308 60 HOH HOH . F 6 HOH A 57 309 61 HOH HOH . F 6 HOH A 58 310 62 HOH HOH . F 6 HOH A 59 311 63 HOH HOH . F 6 HOH A 60 312 64 HOH HOH . F 6 HOH A 61 313 65 HOH HOH . F 6 HOH A 62 314 66 HOH HOH . F 6 HOH A 63 315 67 HOH HOH . F 6 HOH A 64 316 68 HOH HOH . F 6 HOH A 65 317 69 HOH HOH . F 6 HOH A 66 318 70 HOH HOH . F 6 HOH A 67 319 71 HOH HOH . F 6 HOH A 68 320 72 HOH HOH . F 6 HOH A 69 321 73 HOH HOH . F 6 HOH A 70 322 74 HOH HOH . F 6 HOH A 71 323 75 HOH HOH . F 6 HOH A 72 324 76 HOH HOH . F 6 HOH A 73 325 77 HOH HOH . F 6 HOH A 74 326 78 HOH HOH . F 6 HOH A 75 327 79 HOH HOH . F 6 HOH A 76 328 80 HOH HOH . F 6 HOH A 77 329 81 HOH HOH . F 6 HOH A 78 330 82 HOH HOH . F 6 HOH A 79 331 83 HOH HOH . F 6 HOH A 80 332 84 HOH HOH . F 6 HOH A 81 333 85 HOH HOH . F 6 HOH A 82 334 86 HOH HOH . F 6 HOH A 83 335 87 HOH HOH . F 6 HOH A 84 336 88 HOH HOH . F 6 HOH A 85 337 89 HOH HOH . F 6 HOH A 86 338 90 HOH HOH . F 6 HOH A 87 339 91 HOH HOH . F 6 HOH A 88 340 92 HOH HOH . F 6 HOH A 89 341 93 HOH HOH . F 6 HOH A 90 342 94 HOH HOH . F 6 HOH A 91 343 95 HOH HOH . F 6 HOH A 92 344 96 HOH HOH . F 6 HOH A 93 345 97 HOH HOH . F 6 HOH A 94 346 98 HOH HOH . F 6 HOH A 95 347 99 HOH HOH . F 6 HOH A 96 348 100 HOH HOH . F 6 HOH A 97 349 101 HOH HOH . F 6 HOH A 98 350 102 HOH HOH . F 6 HOH A 99 351 103 HOH HOH . F 6 HOH A 100 352 104 HOH HOH . F 6 HOH A 101 353 105 HOH HOH . F 6 HOH A 102 354 106 HOH HOH . F 6 HOH A 103 355 107 HOH HOH . F 6 HOH A 104 356 108 HOH HOH . F 6 HOH A 105 357 109 HOH HOH . F 6 HOH A 106 358 110 HOH HOH . F 6 HOH A 107 359 111 HOH HOH . F 6 HOH A 108 360 112 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 5 -1.219 14.986 1.204 1 65.44 ? C1 EDO 252 A 1 HETATM 2 O O1 EDO . . . E 5 -0.002 15.662 0.879 1 64.78 ? O1 EDO 252 A 1 HETATM 3 C C2 EDO . . . E 5 -1.649 15.393 2.595 1 61.73 ? C2 EDO 252 A 1 HETATM 4 O O2 EDO . . . E 5 -1.659 14.242 3.459 1 64.38 ? O2 EDO 252 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #