data_2GFX # _model_server_result.job_id 7hmZvY5mNuBGfby0-xPWkw _model_server_result.datetime_utc '2024-10-15 10:25:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2gfx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 2GFX # _exptl.entry_id 2GFX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 441.474 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PLATENSIMYCIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2GFX _cell.length_a 75.727 _cell.length_b 75.727 _cell.length_c 147.304 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2GFX _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 147.304 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H27 N O7' _chem_comp.formula_weight 441.474 _chem_comp.id PMN _chem_comp.mon_nstd_flag . _chem_comp.name PLATENSIMYCIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O16 C10 PMN sing 260 n n O16 C15 PMN sing 261 n n O19 C5 PMN doub 262 n n O20 C1 PMN doub 263 n n O30 C25 PMN sing 264 n n O30 HO30 PMN sing 265 n n O31 C23 PMN sing 266 n n O31 HO31 PMN sing 267 n n O32 C21 PMN doub 268 n n O33 C21 PMN sing 269 n n O33 HO33 PMN sing 270 n n N28 C1 PMN sing 271 n n N28 C24 PMN sing 272 n n N28 HN28 PMN sing 273 n n C1 C2 PMN sing 274 n n C2 C3 PMN sing 275 n n C2 H21 PMN sing 276 n n C2 H22 PMN sing 277 n n C3 C4 PMN sing 278 n n C3 H31 PMN sing 279 n n C3 H32 PMN sing 280 n n C4 C5 PMN sing 281 n n C4 C9 PMN sing 282 n n C4 C18 PMN sing 283 n n C5 C6 PMN sing 284 n n C6 C7 PMN doub 285 n n C6 H6 PMN sing 286 n n C7 C8 PMN sing 287 n n C7 H7 PMN sing 288 n n C8 C9 PMN sing 289 n n C8 C13 PMN sing 290 n n C8 C14 PMN sing 291 n n C9 C10 PMN sing 292 n n C9 H9 PMN sing 293 n n C10 C11 PMN sing 294 n n C10 H10 PMN sing 295 n n C11 C12 PMN sing 296 n n C11 H111 PMN sing 297 n n C11 H112 PMN sing 298 n n C12 C13 PMN sing 299 n n C12 C15 PMN sing 300 n n C12 H12 PMN sing 301 n n C13 H131 PMN sing 302 n n C13 H132 PMN sing 303 n n C14 C15 PMN sing 304 n n C14 H141 PMN sing 305 n n C14 H142 PMN sing 306 n n C15 C17 PMN sing 307 n n C17 H171 PMN sing 308 n n C17 H172 PMN sing 309 n n C17 H173 PMN sing 310 n n C18 H181 PMN sing 311 n n C18 H182 PMN sing 312 n n C18 H183 PMN sing 313 n n C21 C22 PMN sing 314 n n C22 C23 PMN sing 315 n y C22 C27 PMN doub 316 n y C23 C24 PMN doub 317 n y C24 C25 PMN sing 318 n y C25 C26 PMN doub 319 n y C26 C27 PMN sing 320 n y C26 H26 PMN sing 321 n n C27 H27 PMN sing 322 n n # _atom_sites.entry_id 2GFX _atom_sites.fract_transf_matrix[1][1] 0.013205 _atom_sites.fract_transf_matrix[1][2] 0.007624 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015248 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006789 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PMN A 1 1001 1001 PMN PMN . C 3 HOH A 1 1002 1 HOH HOH . C 3 HOH A 2 1003 2 HOH HOH . C 3 HOH A 3 1004 3 HOH HOH . C 3 HOH A 4 1005 4 HOH HOH . C 3 HOH A 5 1006 5 HOH HOH . C 3 HOH A 6 1007 6 HOH HOH . C 3 HOH A 7 1008 7 HOH HOH . C 3 HOH A 8 1009 8 HOH HOH . C 3 HOH A 9 1010 9 HOH HOH . C 3 HOH A 10 1011 10 HOH HOH . C 3 HOH A 11 1012 11 HOH HOH . C 3 HOH A 12 1013 12 HOH HOH . C 3 HOH A 13 1014 13 HOH HOH . C 3 HOH A 14 1015 14 HOH HOH . C 3 HOH A 15 1016 15 HOH HOH . C 3 HOH A 16 1017 16 HOH HOH . C 3 HOH A 17 1018 17 HOH HOH . C 3 HOH A 18 1019 18 HOH HOH . C 3 HOH A 19 1020 19 HOH HOH . C 3 HOH A 20 1021 20 HOH HOH . C 3 HOH A 21 1022 21 HOH HOH . C 3 HOH A 22 1023 22 HOH HOH . C 3 HOH A 23 1024 23 HOH HOH . C 3 HOH A 24 1025 24 HOH HOH . C 3 HOH A 25 1026 25 HOH HOH . C 3 HOH A 26 1027 26 HOH HOH . C 3 HOH A 27 1028 27 HOH HOH . C 3 HOH A 28 1029 28 HOH HOH . C 3 HOH A 29 1030 29 HOH HOH . C 3 HOH A 30 1031 30 HOH HOH . C 3 HOH A 31 1032 31 HOH HOH . C 3 HOH A 32 1033 32 HOH HOH . C 3 HOH A 33 1034 33 HOH HOH . C 3 HOH A 34 1035 34 HOH HOH . C 3 HOH A 35 1036 35 HOH HOH . C 3 HOH A 36 1037 36 HOH HOH . C 3 HOH A 37 1038 37 HOH HOH . C 3 HOH A 38 1039 38 HOH HOH . C 3 HOH A 39 1040 39 HOH HOH . C 3 HOH A 40 1041 40 HOH HOH . C 3 HOH A 41 1042 41 HOH HOH . C 3 HOH A 42 1043 42 HOH HOH . C 3 HOH A 43 1044 43 HOH HOH . C 3 HOH A 44 1045 44 HOH HOH . C 3 HOH A 45 1046 45 HOH HOH . C 3 HOH A 46 1047 46 HOH HOH . C 3 HOH A 47 1048 47 HOH HOH . C 3 HOH A 48 1049 48 HOH HOH . C 3 HOH A 49 1050 49 HOH HOH . C 3 HOH A 50 1051 50 HOH HOH . C 3 HOH A 51 1052 51 HOH HOH . C 3 HOH A 52 1053 52 HOH HOH . C 3 HOH A 53 1054 53 HOH HOH . C 3 HOH A 54 1055 54 HOH HOH . C 3 HOH A 55 1056 55 HOH HOH . C 3 HOH A 56 1057 56 HOH HOH . C 3 HOH A 57 1058 57 HOH HOH . C 3 HOH A 58 1059 58 HOH HOH . C 3 HOH A 59 1060 59 HOH HOH . C 3 HOH A 60 1061 60 HOH HOH . C 3 HOH A 61 1062 61 HOH HOH . C 3 HOH A 62 1063 62 HOH HOH . C 3 HOH A 63 1064 63 HOH HOH . C 3 HOH A 64 1065 64 HOH HOH . C 3 HOH A 65 1066 65 HOH HOH . C 3 HOH A 66 1067 66 HOH HOH . C 3 HOH A 67 1068 67 HOH HOH . C 3 HOH A 68 1069 68 HOH HOH . C 3 HOH A 69 1070 69 HOH HOH . C 3 HOH A 70 1071 70 HOH HOH . C 3 HOH A 71 1072 71 HOH HOH . C 3 HOH A 72 1073 72 HOH HOH . C 3 HOH A 73 1074 73 HOH HOH . C 3 HOH A 74 1075 74 HOH HOH . C 3 HOH A 75 1076 75 HOH HOH . C 3 HOH A 76 1077 76 HOH HOH . C 3 HOH A 77 1078 77 HOH HOH . C 3 HOH A 78 1079 78 HOH HOH . C 3 HOH A 79 1080 79 HOH HOH . C 3 HOH A 80 1081 80 HOH HOH . C 3 HOH A 81 1082 81 HOH HOH . C 3 HOH A 82 1083 82 HOH HOH . C 3 HOH A 83 1084 83 HOH HOH . C 3 HOH A 84 1085 84 HOH HOH . C 3 HOH A 85 1086 85 HOH HOH . C 3 HOH A 86 1087 86 HOH HOH . C 3 HOH A 87 1088 87 HOH HOH . C 3 HOH A 88 1089 88 HOH HOH . C 3 HOH A 89 1090 89 HOH HOH . C 3 HOH A 90 1091 90 HOH HOH . C 3 HOH A 91 1092 91 HOH HOH . C 3 HOH A 92 1093 92 HOH HOH . C 3 HOH A 93 1094 93 HOH HOH . C 3 HOH A 94 1095 94 HOH HOH . C 3 HOH A 95 1096 95 HOH HOH . C 3 HOH A 96 1097 96 HOH HOH . C 3 HOH A 97 1098 97 HOH HOH . C 3 HOH A 98 1099 98 HOH HOH . C 3 HOH A 99 1100 99 HOH HOH . C 3 HOH A 100 1101 100 HOH HOH . C 3 HOH A 101 1102 101 HOH HOH . C 3 HOH A 102 1103 102 HOH HOH . C 3 HOH A 103 1104 103 HOH HOH . C 3 HOH A 104 1105 104 HOH HOH . C 3 HOH A 105 1106 105 HOH HOH . C 3 HOH A 106 1107 106 HOH HOH . C 3 HOH A 107 1108 107 HOH HOH . C 3 HOH A 108 1109 108 HOH HOH . C 3 HOH A 109 1110 109 HOH HOH . C 3 HOH A 110 1111 110 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O16 PMN . . . B 2 24.125 28.382 54.547 1 52.62 ? O16 PMN 1001 A 1 HETATM 2 O O19 PMN . . . B 2 20.473 28.899 49.786 1 62.06 ? O19 PMN 1001 A 1 HETATM 3 O O20 PMN . . . B 2 18.283 26.891 52.85 1 55.67 ? O20 PMN 1001 A 1 HETATM 4 O O30 PMN . . . B 2 18.976 24.076 56.176 1 45.79 ? O30 PMN 1001 A 1 HETATM 5 O O31 PMN . . . B 2 17.375 28.486 55.5 1 47.44 ? O31 PMN 1001 A 1 HETATM 6 O O32 PMN . . . B 2 15.21 29.118 56.952 1 31.33 ? O32 PMN 1001 A 1 HETATM 7 O O33 PMN . . . B 2 14.087 27.45 58.017 1 41.42 ? O33 PMN 1001 A 1 HETATM 8 N N28 PMN . . . B 2 19.237 26.644 54.889 1 50.84 ? N28 PMN 1001 A 1 HETATM 9 C C1 PMN . . . B 2 19.266 26.917 53.543 1 52.63 ? C1 PMN 1001 A 1 HETATM 10 C C2 PMN . . . B 2 20.528 27.274 52.825 1 51.57 ? C2 PMN 1001 A 1 HETATM 11 C C3 PMN . . . B 2 20.463 28.771 52.906 1 53.22 ? C3 PMN 1001 A 1 HETATM 12 C C4 PMN . . . B 2 21.466 29.504 52.04 1 56.87 ? C4 PMN 1001 A 1 HETATM 13 C C5 PMN . . . B 2 21.443 29.079 50.516 1 58.67 ? C5 PMN 1001 A 1 HETATM 14 C C6 PMN . . . B 2 22.694 28.893 49.891 1 57.8 ? C6 PMN 1001 A 1 HETATM 15 C C7 PMN . . . B 2 23.846 29.04 50.48 1 59.06 ? C7 PMN 1001 A 1 HETATM 16 C C8 PMN . . . B 2 24.058 29.394 51.864 1 56.61 ? C8 PMN 1001 A 1 HETATM 17 C C9 PMN . . . B 2 22.777 29.001 52.657 1 56.91 ? C9 PMN 1001 A 1 HETATM 18 C C10 PMN . . . B 2 22.976 29.217 54.142 1 54.5 ? C10 PMN 1001 A 1 HETATM 19 C C11 PMN . . . B 2 23.524 30.623 54.451 1 57.82 ? C11 PMN 1001 A 1 HETATM 20 C C12 PMN . . . B 2 24.89 30.547 53.698 1 58.63 ? C12 PMN 1001 A 1 HETATM 21 C C13 PMN . . . B 2 24.58 30.836 52.16 1 55.19 ? C13 PMN 1001 A 1 HETATM 22 C C14 PMN . . . B 2 25.217 28.503 52.425 1 56.35 ? C14 PMN 1001 A 1 HETATM 23 C C15 PMN . . . B 2 25.279 29.029 53.873 1 54.93 ? C15 PMN 1001 A 1 HETATM 24 C C17 PMN . . . B 2 26.52 28.703 54.66 1 52.81 ? C17 PMN 1001 A 1 HETATM 25 C C18 PMN . . . B 2 21.317 31.077 52.059 1 57.35 ? C18 PMN 1001 A 1 HETATM 26 C C21 PMN . . . B 2 15.089 27.961 57.351 1 37.06 ? C21 PMN 1001 A 1 HETATM 27 C C22 PMN . . . B 2 16.141 26.908 57.027 1 39.43 ? C22 PMN 1001 A 1 HETATM 28 C C23 PMN . . . B 2 17.202 27.248 56.124 1 45.58 ? C23 PMN 1001 A 1 HETATM 29 C C24 PMN . . . B 2 18.16 26.255 55.828 1 45.44 ? C24 PMN 1001 A 1 HETATM 30 C C25 PMN . . . B 2 18.049 24.999 56.446 1 43.53 ? C25 PMN 1001 A 1 HETATM 31 C C26 PMN . . . B 2 16.994 24.663 57.339 1 40.6 ? C26 PMN 1001 A 1 HETATM 32 C C27 PMN . . . B 2 16.046 25.609 57.609 1 38.23 ? C27 PMN 1001 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #