data_2GFY # _model_server_result.job_id vqEM5oQTDlPMbld0DFEqHA _model_server_result.datetime_utc '2024-10-15 10:23:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2gfy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 2GFY # _exptl.entry_id 2GFY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 200.318 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LAURIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2GFY _cell.length_a 74.73 _cell.length_b 74.73 _cell.length_c 148.072 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2GFY _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_675 x-y+1,-y+2,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 129.436157 98.714667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 178 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 163 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id DAO _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id DAO _struct_conn.ptnr2_auth_seq_id 1001 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.688 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C12 H24 O2' _chem_comp.formula_weight 200.318 _chem_comp.id DAO _chem_comp.mon_nstd_flag . _chem_comp.name 'LAURIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 DAO doub 83 n n O2 C1 DAO sing 84 n n O2 HO2 DAO sing 85 n n C1 C2 DAO sing 86 n n C2 C3 DAO sing 87 n n C2 H21 DAO sing 88 n n C2 H22 DAO sing 89 n n C3 C4 DAO sing 90 n n C3 H31 DAO sing 91 n n C3 H32 DAO sing 92 n n C4 C5 DAO sing 93 n n C4 H41 DAO sing 94 n n C4 H42 DAO sing 95 n n C5 C6 DAO sing 96 n n C5 H51 DAO sing 97 n n C5 H52 DAO sing 98 n n C6 C7 DAO sing 99 n n C6 H61 DAO sing 100 n n C6 H62 DAO sing 101 n n C7 C8 DAO sing 102 n n C7 H71 DAO sing 103 n n C7 H72 DAO sing 104 n n C8 C9 DAO sing 105 n n C8 H81 DAO sing 106 n n C8 H82 DAO sing 107 n n C9 C10 DAO sing 108 n n C9 H91 DAO sing 109 n n C9 H92 DAO sing 110 n n C10 C11 DAO sing 111 n n C10 H101 DAO sing 112 n n C10 H102 DAO sing 113 n n C11 C12 DAO sing 114 n n C11 H111 DAO sing 115 n n C11 H112 DAO sing 116 n n C12 H121 DAO sing 117 n n C12 H122 DAO sing 118 n n C12 H123 DAO sing 119 n n # _atom_sites.entry_id 2GFY _atom_sites.fract_transf_matrix[1][1] 0.013382 _atom_sites.fract_transf_matrix[1][2] 0.007726 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015452 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006753 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DAO A 1 1001 1001 DAO DAO . C 3 HOH A 1 1002 1 HOH HOH . C 3 HOH A 2 1003 2 HOH HOH . C 3 HOH A 3 1004 3 HOH HOH . C 3 HOH A 4 1005 4 HOH HOH . C 3 HOH A 5 1006 5 HOH HOH . C 3 HOH A 6 1007 6 HOH HOH . C 3 HOH A 7 1008 7 HOH HOH . C 3 HOH A 8 1009 8 HOH HOH . C 3 HOH A 9 1010 9 HOH HOH . C 3 HOH A 10 1011 10 HOH HOH . C 3 HOH A 11 1012 11 HOH HOH . C 3 HOH A 12 1013 12 HOH HOH . C 3 HOH A 13 1014 13 HOH HOH . C 3 HOH A 14 1015 14 HOH HOH . C 3 HOH A 15 1016 15 HOH HOH . C 3 HOH A 16 1017 16 HOH HOH . C 3 HOH A 17 1018 17 HOH HOH . C 3 HOH A 18 1019 18 HOH HOH . C 3 HOH A 19 1020 19 HOH HOH . C 3 HOH A 20 1021 20 HOH HOH . C 3 HOH A 21 1022 21 HOH HOH . C 3 HOH A 22 1023 22 HOH HOH . C 3 HOH A 23 1024 23 HOH HOH . C 3 HOH A 24 1025 24 HOH HOH . C 3 HOH A 25 1026 25 HOH HOH . C 3 HOH A 26 1027 26 HOH HOH . C 3 HOH A 27 1028 27 HOH HOH . C 3 HOH A 28 1029 28 HOH HOH . C 3 HOH A 29 1030 29 HOH HOH . C 3 HOH A 30 1031 30 HOH HOH . C 3 HOH A 31 1032 31 HOH HOH . C 3 HOH A 32 1033 32 HOH HOH . C 3 HOH A 33 1034 33 HOH HOH . C 3 HOH A 34 1035 34 HOH HOH . C 3 HOH A 35 1036 35 HOH HOH . C 3 HOH A 36 1037 36 HOH HOH . C 3 HOH A 37 1038 37 HOH HOH . C 3 HOH A 38 1039 38 HOH HOH . C 3 HOH A 39 1040 39 HOH HOH . C 3 HOH A 40 1041 40 HOH HOH . C 3 HOH A 41 1042 41 HOH HOH . C 3 HOH A 42 1043 42 HOH HOH . C 3 HOH A 43 1044 43 HOH HOH . C 3 HOH A 44 1045 44 HOH HOH . C 3 HOH A 45 1046 45 HOH HOH . C 3 HOH A 46 1047 46 HOH HOH . C 3 HOH A 47 1048 47 HOH HOH . C 3 HOH A 48 1049 48 HOH HOH . C 3 HOH A 49 1050 49 HOH HOH . C 3 HOH A 50 1051 50 HOH HOH . C 3 HOH A 51 1052 51 HOH HOH . C 3 HOH A 52 1053 52 HOH HOH . C 3 HOH A 53 1054 53 HOH HOH . C 3 HOH A 54 1055 54 HOH HOH . C 3 HOH A 55 1056 55 HOH HOH . C 3 HOH A 56 1057 56 HOH HOH . C 3 HOH A 57 1058 57 HOH HOH . C 3 HOH A 58 1059 58 HOH HOH . C 3 HOH A 59 1060 59 HOH HOH . C 3 HOH A 60 1061 60 HOH HOH . C 3 HOH A 61 1062 61 HOH HOH . C 3 HOH A 62 1063 62 HOH HOH . C 3 HOH A 63 1064 63 HOH HOH . C 3 HOH A 64 1065 64 HOH HOH . C 3 HOH A 65 1066 65 HOH HOH . C 3 HOH A 66 1067 66 HOH HOH . C 3 HOH A 67 1068 67 HOH HOH . C 3 HOH A 68 1069 68 HOH HOH . C 3 HOH A 69 1070 69 HOH HOH . C 3 HOH A 70 1071 70 HOH HOH . C 3 HOH A 71 1072 71 HOH HOH . C 3 HOH A 72 1073 72 HOH HOH . C 3 HOH A 73 1074 73 HOH HOH . C 3 HOH A 74 1075 74 HOH HOH . C 3 HOH A 75 1076 75 HOH HOH . C 3 HOH A 76 1077 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 DAO . . . B 2 -6.41 65.273 61.575 1 41.81 ? O1 DAO 1001 A 1 HETATM 2 C C1 DAO . . . B 2 -5.787 64.225 61.862 1 42.14 ? C1 DAO 1001 A 1 HETATM 3 C C2 DAO . . . B 2 -4.295 64.25 61.819 1 41.01 ? C2 DAO 1001 A 1 HETATM 4 C C3 DAO . . . B 2 -3.693 64.867 60.563 1 39.51 ? C3 DAO 1001 A 1 HETATM 5 C C4 DAO . . . B 2 -4.301 64.177 59.324 1 38.93 ? C4 DAO 1001 A 1 HETATM 6 C C5 DAO . . . B 2 -3.301 64.486 58.19 1 38.82 ? C5 DAO 1001 A 1 HETATM 7 C C6 DAO . . . B 2 -3.255 63.385 57.065 1 38.97 ? C6 DAO 1001 A 1 HETATM 8 C C7 DAO . . . B 2 -2.293 62.314 57.586 1 39.64 ? C7 DAO 1001 A 1 HETATM 9 C C8 DAO . . . B 2 -0.845 62.817 57.974 1 39.29 ? C8 DAO 1001 A 1 HETATM 10 C C9 DAO . . . B 2 0.032 62.883 56.77 1 40.72 ? C9 DAO 1001 A 1 HETATM 11 C C10 DAO . . . B 2 1.263 63.173 57.588 1 41.37 ? C10 DAO 1001 A 1 HETATM 12 C C11 DAO . . . B 2 2.288 64.113 56.875 1 42.59 ? C11 DAO 1001 A 1 HETATM 13 C C12 DAO . . . B 2 1.837 64.457 55.464 1 43.45 ? C12 DAO 1001 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 13 #