data_2GG8 # _model_server_result.job_id KcC1CDHzNlh_h1F_O43ajA _model_server_result.datetime_utc '2025-01-02 17:30:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2gg8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 2GG8 # _exptl.entry_id 2GG8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 393.477 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'METHYL N-[(2S,3R)-3-AMINO-2-HYDROXY-3-(4-METHYLPHENYL)PROPANOYL]-D-ALANYL-D-LEUCINATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.47 _cell.angle_gamma 90 _cell.entry_id 2GG8 _cell.length_a 38.701 _cell.length_b 62.017 _cell.length_c 53.255 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2GG8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASN 73 A ASN 74 1_555 D NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc2 A O VAL 75 A VAL 76 1_555 D NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc3 A OD1 ASP 96 A ASP 97 1_555 C CO CO . A CO 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc4 A OD2 ASP 96 A ASP 97 1_555 C CO CO . A CO 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc5 A OD1 ASP 107 A ASP 108 1_555 B CO CO . A CO 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc6 A OD2 ASP 107 A ASP 108 1_555 C CO CO . A CO 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc7 A NE2 HIS 170 A HIS 171 1_555 B CO CO . A CO 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc8 A OE2 GLU 203 A GLU 204 1_555 B CO CO . A CO 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc9 A O SER 230 A SER 231 1_555 D NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc10 A OE1 GLU 234 A GLU 235 1_555 B CO CO . A CO 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc11 A OE2 GLU 234 A GLU 235 1_555 C CO CO . A CO 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc12 B CO CO . A CO 301 1_555 E O22 U15 . A U15 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc13 B CO CO . A CO 301 1_555 E O19 U15 . A U15 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc14 C CO CO . A CO 302 1_555 E N15 U15 . A U15 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc15 C CO CO . A CO 302 1_555 E O19 U15 . A U15 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc16 D NA NA . A NA 503 1_555 F O HOH . A HOH 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? # _chem_comp.formula 'C20 H31 N3 O5' _chem_comp.formula_weight 393.477 _chem_comp.id U15 _chem_comp.mon_nstd_flag . _chem_comp.name 'METHYL N-[(2S,3R)-3-AMINO-2-HYDROXY-3-(4-METHYLPHENYL)PROPANOYL]-D-ALANYL-D-LEUCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '2-[2-(3-AMINO-2-HYDROXY-3-P-TOLYL-PROPIONYLAMINO)-PROPIONYLAMINO]-4-METHYL-PENTANOIC ACID METHYL ESTER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O42 C41 U15 doub 358 n n C41 O43 U15 sing 359 n n C41 C37 U15 sing 360 n n O43 C44 U15 sing 361 n n C44 H441 U15 sing 362 n n C44 H442 U15 sing 363 n n C44 H443 U15 sing 364 n n C37 C39 U15 sing 365 n n C37 N36 U15 sing 366 n n C37 H37 U15 sing 367 n n C39 C48 U15 sing 368 n n C39 H391 U15 sing 369 n n C39 H392 U15 sing 370 n n C48 C53 U15 sing 371 n n C48 C51 U15 sing 372 n n C48 H48 U15 sing 373 n n C53 H531 U15 sing 374 n n C53 H532 U15 sing 375 n n C53 H533 U15 sing 376 n n C51 H511 U15 sing 377 n n C51 H512 U15 sing 378 n n C51 H513 U15 sing 379 n n N36 C27 U15 sing 380 n n N36 HN36 U15 sing 381 n n C27 O35 U15 doub 382 n n C27 C24 U15 sing 383 n n C24 C28 U15 sing 384 n n C24 N23 U15 sing 385 n n C24 H24 U15 sing 386 n n C28 H281 U15 sing 387 n n C28 H282 U15 sing 388 n n C28 H283 U15 sing 389 n n N23 C20 U15 sing 390 n n N23 HN23 U15 sing 391 n n C20 O22 U15 doub 392 n n C20 C14 U15 sing 393 n n C14 O19 U15 sing 394 n n C14 C7 U15 sing 395 n n C14 H14 U15 sing 396 n n O19 HO19 U15 sing 397 n n C7 N15 U15 sing 398 n n C7 C3 U15 sing 399 n n C7 H7 U15 sing 400 n n N15 H151 U15 sing 401 n n N15 H152 U15 sing 402 n n C3 C6 U15 doub 403 n y C3 C1 U15 sing 404 n y C6 C2 U15 sing 405 n y C6 H6 U15 sing 406 n n C2 C5 U15 doub 407 n y C2 H2 U15 sing 408 n n C5 C9 U15 sing 409 n n C5 C4 U15 sing 410 n y C9 H91 U15 sing 411 n n C9 H92 U15 sing 412 n n C9 H93 U15 sing 413 n n C4 C1 U15 doub 414 n y C4 H4 U15 sing 415 n n C1 H1 U15 sing 416 n n # _atom_sites.entry_id 2GG8 _atom_sites.fract_transf_matrix[1][1] 0.025839 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008132 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016125 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019686 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CO A 1 301 301 CO CO . C 2 CO A 1 302 302 CO CO . D 3 NA A 1 503 503 NA NA . E 4 U15 A 1 501 501 U15 U15 . F 5 HOH A 1 504 1 HOH HOH . F 5 HOH A 2 505 2 HOH HOH . F 5 HOH A 3 506 3 HOH HOH . F 5 HOH A 4 507 4 HOH HOH . F 5 HOH A 5 508 5 HOH HOH . F 5 HOH A 6 509 11 HOH HOH . F 5 HOH A 7 510 12 HOH HOH . F 5 HOH A 8 511 17 HOH HOH . F 5 HOH A 9 512 18 HOH HOH . F 5 HOH A 10 513 21 HOH HOH . F 5 HOH A 11 514 23 HOH HOH . F 5 HOH A 12 515 26 HOH HOH . F 5 HOH A 13 516 27 HOH HOH . F 5 HOH A 14 517 29 HOH HOH . F 5 HOH A 15 518 31 HOH HOH . F 5 HOH A 16 519 34 HOH HOH . F 5 HOH A 17 520 35 HOH HOH . F 5 HOH A 18 521 36 HOH HOH . F 5 HOH A 19 522 54 HOH HOH . F 5 HOH A 20 523 57 HOH HOH . F 5 HOH A 21 524 79 HOH HOH . F 5 HOH A 22 525 86 HOH HOH . F 5 HOH A 23 526 91 HOH HOH . F 5 HOH A 24 527 97 HOH HOH . F 5 HOH A 25 528 99 HOH HOH . F 5 HOH A 26 529 100 HOH HOH . F 5 HOH A 27 530 106 HOH HOH . F 5 HOH A 28 531 110 HOH HOH . F 5 HOH A 29 532 124 HOH HOH . F 5 HOH A 30 533 125 HOH HOH . F 5 HOH A 31 534 137 HOH HOH . F 5 HOH A 32 535 190 HOH HOH . F 5 HOH A 33 536 192 HOH HOH . F 5 HOH A 34 537 193 HOH HOH . F 5 HOH A 35 538 195 HOH HOH . F 5 HOH A 36 539 218 HOH HOH . F 5 HOH A 37 540 224 HOH HOH . F 5 HOH A 38 541 225 HOH HOH . F 5 HOH A 39 542 228 HOH HOH . F 5 HOH A 40 543 232 HOH HOH . F 5 HOH A 41 544 233 HOH HOH . F 5 HOH A 42 545 236 HOH HOH . F 5 HOH A 43 546 254 HOH HOH . F 5 HOH A 44 547 255 HOH HOH . F 5 HOH A 45 548 267 HOH HOH . F 5 HOH A 46 549 273 HOH HOH . F 5 HOH A 47 550 277 HOH HOH . F 5 HOH A 48 551 291 HOH HOH . F 5 HOH A 49 552 361 HOH HOH . F 5 HOH A 50 553 371 HOH HOH . F 5 HOH A 51 554 372 HOH HOH . F 5 HOH A 52 555 373 HOH HOH . F 5 HOH A 53 556 374 HOH HOH . F 5 HOH A 54 557 375 HOH HOH . F 5 HOH A 55 558 376 HOH HOH . F 5 HOH A 56 559 377 HOH HOH . F 5 HOH A 57 560 378 HOH HOH . F 5 HOH A 58 561 379 HOH HOH . F 5 HOH A 59 562 380 HOH HOH . F 5 HOH A 60 563 381 HOH HOH . F 5 HOH A 61 564 382 HOH HOH . F 5 HOH A 62 565 383 HOH HOH . F 5 HOH A 63 566 384 HOH HOH . F 5 HOH A 64 567 385 HOH HOH . F 5 HOH A 65 568 386 HOH HOH . F 5 HOH A 66 569 387 HOH HOH . F 5 HOH A 67 570 388 HOH HOH . F 5 HOH A 68 571 389 HOH HOH . F 5 HOH A 69 572 390 HOH HOH . F 5 HOH A 70 573 391 HOH HOH . F 5 HOH A 71 574 392 HOH HOH . F 5 HOH A 72 575 393 HOH HOH . F 5 HOH A 73 576 394 HOH HOH . F 5 HOH A 74 577 395 HOH HOH . F 5 HOH A 75 578 396 HOH HOH . F 5 HOH A 76 579 397 HOH HOH . F 5 HOH A 77 580 398 HOH HOH . F 5 HOH A 78 581 399 HOH HOH . F 5 HOH A 79 582 400 HOH HOH . F 5 HOH A 80 583 401 HOH HOH . F 5 HOH A 81 584 402 HOH HOH . F 5 HOH A 82 585 403 HOH HOH . F 5 HOH A 83 586 404 HOH HOH . F 5 HOH A 84 587 405 HOH HOH . F 5 HOH A 85 588 406 HOH HOH . F 5 HOH A 86 589 407 HOH HOH . F 5 HOH A 87 590 408 HOH HOH . F 5 HOH A 88 591 409 HOH HOH . F 5 HOH A 89 592 410 HOH HOH . F 5 HOH A 90 593 411 HOH HOH . F 5 HOH A 91 594 412 HOH HOH . F 5 HOH A 92 595 413 HOH HOH . F 5 HOH A 93 596 414 HOH HOH . F 5 HOH A 94 597 415 HOH HOH . F 5 HOH A 95 598 416 HOH HOH . F 5 HOH A 96 599 417 HOH HOH . F 5 HOH A 97 600 418 HOH HOH . F 5 HOH A 98 601 419 HOH HOH . F 5 HOH A 99 602 420 HOH HOH . F 5 HOH A 100 603 421 HOH HOH . F 5 HOH A 101 604 422 HOH HOH . F 5 HOH A 102 605 423 HOH HOH . F 5 HOH A 103 606 424 HOH HOH . F 5 HOH A 104 607 425 HOH HOH . F 5 HOH A 105 608 426 HOH HOH . F 5 HOH A 106 609 427 HOH HOH . F 5 HOH A 107 610 428 HOH HOH . F 5 HOH A 108 611 429 HOH HOH . F 5 HOH A 109 612 430 HOH HOH . F 5 HOH A 110 613 431 HOH HOH . F 5 HOH A 111 614 432 HOH HOH . F 5 HOH A 112 615 433 HOH HOH . F 5 HOH A 113 616 434 HOH HOH . F 5 HOH A 114 617 435 HOH HOH . F 5 HOH A 115 618 437 HOH HOH . F 5 HOH A 116 619 438 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O42 U15 . . . E 4 -5.117 -6.456 6.152 1 48.58 ? O42 U15 501 A 1 HETATM 2 C C41 U15 . . . E 4 -4.344 -5.644 5.657 1 42.15 ? C41 U15 501 A 1 HETATM 3 O O43 U15 . . . E 4 -3.214 -6.307 5.014 1 41.9 ? O43 U15 501 A 1 HETATM 4 C C44 U15 . . . E 4 -3.339 -7.736 4.919 1 45.3 ? C44 U15 501 A 1 HETATM 5 C C37 U15 . . . E 4 -4.555 -4.14 5.72 1 35.66 ? C37 U15 501 A 1 HETATM 6 C C39 U15 . . . E 4 -5.491 -3.702 6.839 1 45.87 ? C39 U15 501 A 1 HETATM 7 C C48 U15 . . . E 4 -6.54 -2.654 6.433 1 49.7 ? C48 U15 501 A 1 HETATM 8 C C53 U15 . . . E 4 -6.062 -1.24 6.72 1 52.16 ? C53 U15 501 A 1 HETATM 9 C C51 U15 . . . E 4 -7.866 -2.82 7.158 1 47.84 ? C51 U15 501 A 1 HETATM 10 N N36 U15 . . . E 4 -3.295 -3.413 5.869 1 27.98 ? N36 U15 501 A 1 HETATM 11 C C27 U15 . . . E 4 -2.59 -3.289 6.993 1 30.01 ? C27 U15 501 A 1 HETATM 12 O O35 U15 . . . E 4 -2.87 -3.781 8.08 1 22.99 ? O35 U15 501 A 1 HETATM 13 C C24 U15 . . . E 4 -1.31 -2.501 6.914 1 29.44 ? C24 U15 501 A 1 HETATM 14 C C28 U15 . . . E 4 -0.177 -3.441 6.471 1 30.71 ? C28 U15 501 A 1 HETATM 15 N N23 U15 . . . E 4 -1.027 -1.91 8.223 1 21.52 ? N23 U15 501 A 1 HETATM 16 C C20 U15 . . . E 4 -0.291 -0.83 8.256 1 18.94 ? C20 U15 501 A 1 HETATM 17 O O22 U15 . . . E 4 0.156 -0.258 7.264 1 18.81 ? O22 U15 501 A 1 HETATM 18 C C14 U15 . . . E 4 0.028 -0.203 9.597 1 12.53 ? C14 U15 501 A 1 HETATM 19 O O19 U15 . . . E 4 1.454 0.122 9.495 1 16.84 ? O19 U15 501 A 1 HETATM 20 C C7 U15 . . . E 4 -0.724 1.126 9.591 1 14.22 ? C7 U15 501 A 1 HETATM 21 N N15 U15 . . . E 4 -0.357 2.111 10.623 1 15.55 ? N15 U15 501 A 1 HETATM 22 C C3 U15 . . . E 4 -2.191 0.848 9.706 1 21.65 ? C3 U15 501 A 1 HETATM 23 C C6 U15 . . . E 4 -2.751 0.399 10.91 1 20.85 ? C6 U15 501 A 1 HETATM 24 C C2 U15 . . . E 4 -4.121 0.111 11.015 1 25.37 ? C2 U15 501 A 1 HETATM 25 C C5 U15 . . . E 4 -4.974 0.264 9.929 1 26.32 ? C5 U15 501 A 1 HETATM 26 C C9 U15 . . . E 4 -6.42 -0.036 10.053 1 29.34 ? C9 U15 501 A 1 HETATM 27 C C4 U15 . . . E 4 -4.441 0.7 8.712 1 25.83 ? C4 U15 501 A 1 HETATM 28 C C1 U15 . . . E 4 -3.067 0.987 8.619 1 21.44 ? C1 U15 501 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 22 _model_server_stats.element_count 28 #