data_2GGN # _model_server_result.job_id wNke5_s3PO-dGGG88AqXug _model_server_result.datetime_utc '2025-01-10 15:00:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ggn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":252}' # _entry.id 2GGN # _exptl.entry_id 2GGN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2GGN _cell.length_a 81.672 _cell.length_b 81.672 _cell.length_c 75.508 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2GGN _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 53 X HIS 42 1_555 E FE HEM . X HEM 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc2 A NE2 HIS 174 X HIS 163 1_555 E FE HEM . X HEM 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc3 A O THR 175 X THR 164 1_555 B NA NA . X NA 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc4 A OG1 THR 175 X THR 164 1_555 B NA NA . X NA 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.128 ? metalc ? metalc5 A OG1 THR 191 X THR 180 1_555 B NA NA . X NA 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.913 ? metalc ? metalc6 A O ASN 193 X ASN 182 1_555 B NA NA . X NA 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc7 A OD1 ASN 193 X ASN 182 1_555 B NA NA . X NA 252 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc8 A O ILE 196 X ILE 185 1_555 B NA NA . X NA 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? metalc ? metalc9 A OD1 ASP 198 X ASP 187 1_555 B NA NA . X NA 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.985 ? metalc ? metalc10 A OG SER 200 X SER 189 1_555 B NA NA . X NA 252 1_555 ? B ? ? ? ? ? ? ? ? ? ? 3.083 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2GGN _atom_sites.fract_transf_matrix[1][1] 0.012244 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012244 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013244 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA X 1 252 252 NA NA . C 3 SO4 X 1 9001 9001 SO4 SO4 . D 3 SO4 X 1 9002 9002 SO4 SO4 . E 4 HEM X 1 251 251 HEM HEM . F 5 HOH X 1 9003 1 HOH HOH . F 5 HOH X 2 9004 2 HOH HOH . F 5 HOH X 3 9005 3 HOH HOH . F 5 HOH X 4 9006 4 HOH HOH . F 5 HOH X 5 9007 5 HOH HOH . F 5 HOH X 6 9008 6 HOH HOH . F 5 HOH X 7 9009 7 HOH HOH . F 5 HOH X 8 9010 8 HOH HOH . F 5 HOH X 9 9011 9 HOH HOH . F 5 HOH X 10 9012 10 HOH HOH . F 5 HOH X 11 9013 11 HOH HOH . F 5 HOH X 12 9014 12 HOH HOH . F 5 HOH X 13 9015 13 HOH HOH . F 5 HOH X 14 9016 14 HOH HOH . F 5 HOH X 15 9017 15 HOH HOH . F 5 HOH X 16 9018 16 HOH HOH . F 5 HOH X 17 9019 17 HOH HOH . F 5 HOH X 18 9020 18 HOH HOH . F 5 HOH X 19 9021 19 HOH HOH . F 5 HOH X 20 9022 20 HOH HOH . F 5 HOH X 21 9023 21 HOH HOH . F 5 HOH X 22 9024 22 HOH HOH . F 5 HOH X 23 9025 23 HOH HOH . F 5 HOH X 24 9026 24 HOH HOH . F 5 HOH X 25 9027 25 HOH HOH . F 5 HOH X 26 9028 26 HOH HOH . F 5 HOH X 27 9029 27 HOH HOH . F 5 HOH X 28 9030 28 HOH HOH . F 5 HOH X 29 9031 29 HOH HOH . F 5 HOH X 30 9032 30 HOH HOH . F 5 HOH X 31 9033 31 HOH HOH . F 5 HOH X 32 9034 32 HOH HOH . F 5 HOH X 33 9035 33 HOH HOH . F 5 HOH X 34 9036 34 HOH HOH . F 5 HOH X 35 9037 35 HOH HOH . F 5 HOH X 36 9038 36 HOH HOH . F 5 HOH X 37 9039 37 HOH HOH . F 5 HOH X 38 9040 38 HOH HOH . F 5 HOH X 39 9041 39 HOH HOH . F 5 HOH X 40 9042 40 HOH HOH . F 5 HOH X 41 9043 41 HOH HOH . F 5 HOH X 42 9044 42 HOH HOH . F 5 HOH X 43 9045 43 HOH HOH . F 5 HOH X 44 9046 44 HOH HOH . F 5 HOH X 45 9047 45 HOH HOH . F 5 HOH X 46 9048 46 HOH HOH . F 5 HOH X 47 9049 47 HOH HOH . F 5 HOH X 48 9050 48 HOH HOH . F 5 HOH X 49 9051 49 HOH HOH . F 5 HOH X 50 9052 50 HOH HOH . F 5 HOH X 51 9053 51 HOH HOH . F 5 HOH X 52 9054 52 HOH HOH . F 5 HOH X 53 9055 53 HOH HOH . F 5 HOH X 54 9056 54 HOH HOH . F 5 HOH X 55 9057 55 HOH HOH . F 5 HOH X 56 9058 56 HOH HOH . F 5 HOH X 57 9059 57 HOH HOH . F 5 HOH X 58 9060 58 HOH HOH . F 5 HOH X 59 9061 59 HOH HOH . F 5 HOH X 60 9062 60 HOH HOH . F 5 HOH X 61 9063 61 HOH HOH . F 5 HOH X 62 9064 62 HOH HOH . F 5 HOH X 63 9065 63 HOH HOH . F 5 HOH X 64 9066 64 HOH HOH . F 5 HOH X 65 9067 65 HOH HOH . F 5 HOH X 66 9068 66 HOH HOH . F 5 HOH X 67 9069 67 HOH HOH . F 5 HOH X 68 9070 68 HOH HOH . F 5 HOH X 69 9071 69 HOH HOH . F 5 HOH X 70 9072 70 HOH HOH . F 5 HOH X 71 9073 71 HOH HOH . F 5 HOH X 72 9074 72 HOH HOH . F 5 HOH X 73 9075 73 HOH HOH . F 5 HOH X 74 9076 74 HOH HOH . F 5 HOH X 75 9077 75 HOH HOH . F 5 HOH X 76 9078 76 HOH HOH . F 5 HOH X 77 9079 77 HOH HOH . F 5 HOH X 78 9080 78 HOH HOH . F 5 HOH X 79 9081 79 HOH HOH . F 5 HOH X 80 9082 80 HOH HOH . F 5 HOH X 81 9083 81 HOH HOH . F 5 HOH X 82 9084 82 HOH HOH . F 5 HOH X 83 9085 83 HOH HOH . F 5 HOH X 84 9086 84 HOH HOH . F 5 HOH X 85 9087 85 HOH HOH . F 5 HOH X 86 9088 86 HOH HOH . F 5 HOH X 87 9089 87 HOH HOH . F 5 HOH X 88 9090 88 HOH HOH . F 5 HOH X 89 9091 89 HOH HOH . F 5 HOH X 90 9092 90 HOH HOH . F 5 HOH X 91 9093 91 HOH HOH . F 5 HOH X 92 9094 92 HOH HOH . F 5 HOH X 93 9095 93 HOH HOH . F 5 HOH X 94 9096 94 HOH HOH . F 5 HOH X 95 9097 95 HOH HOH . F 5 HOH X 96 9098 96 HOH HOH . F 5 HOH X 97 9099 97 HOH HOH . F 5 HOH X 98 9100 98 HOH HOH . F 5 HOH X 99 9101 99 HOH HOH . F 5 HOH X 100 9102 100 HOH HOH . F 5 HOH X 101 9103 101 HOH HOH . F 5 HOH X 102 9104 102 HOH HOH . F 5 HOH X 103 9105 103 HOH HOH . F 5 HOH X 104 9106 104 HOH HOH . F 5 HOH X 105 9107 105 HOH HOH . F 5 HOH X 106 9108 106 HOH HOH . F 5 HOH X 107 9109 107 HOH HOH . F 5 HOH X 108 9110 108 HOH HOH . F 5 HOH X 109 9111 109 HOH HOH . F 5 HOH X 110 9112 110 HOH HOH . F 5 HOH X 111 9113 111 HOH HOH . F 5 HOH X 112 9114 112 HOH HOH . F 5 HOH X 113 9115 113 HOH HOH . F 5 HOH X 114 9116 114 HOH HOH . F 5 HOH X 115 9117 115 HOH HOH . F 5 HOH X 116 9118 116 HOH HOH . F 5 HOH X 117 9119 117 HOH HOH . F 5 HOH X 118 9120 118 HOH HOH . F 5 HOH X 119 9121 119 HOH HOH . F 5 HOH X 120 9122 120 HOH HOH . F 5 HOH X 121 9123 121 HOH HOH . F 5 HOH X 122 9124 122 HOH HOH . F 5 HOH X 123 9125 123 HOH HOH . F 5 HOH X 124 9126 124 HOH HOH . F 5 HOH X 125 9127 125 HOH HOH . F 5 HOH X 126 9128 126 HOH HOH . F 5 HOH X 127 9129 127 HOH HOH . F 5 HOH X 128 9130 128 HOH HOH . F 5 HOH X 129 9131 129 HOH HOH . F 5 HOH X 130 9132 130 HOH HOH . F 5 HOH X 131 9133 131 HOH HOH . F 5 HOH X 132 9134 132 HOH HOH . F 5 HOH X 133 9135 133 HOH HOH . F 5 HOH X 134 9136 134 HOH HOH . F 5 HOH X 135 9137 135 HOH HOH . F 5 HOH X 136 9138 136 HOH HOH . F 5 HOH X 137 9139 137 HOH HOH . F 5 HOH X 138 9140 138 HOH HOH . F 5 HOH X 139 9141 139 HOH HOH . F 5 HOH X 140 9142 140 HOH HOH . F 5 HOH X 141 9143 141 HOH HOH . F 5 HOH X 142 9144 142 HOH HOH . F 5 HOH X 143 9145 143 HOH HOH . F 5 HOH X 144 9146 144 HOH HOH . F 5 HOH X 145 9147 145 HOH HOH . F 5 HOH X 146 9148 146 HOH HOH . F 5 HOH X 147 9149 147 HOH HOH . F 5 HOH X 148 9150 148 HOH HOH . F 5 HOH X 149 9151 149 HOH HOH . F 5 HOH X 150 9152 150 HOH HOH . F 5 HOH X 151 9153 151 HOH HOH . F 5 HOH X 152 9154 152 HOH HOH . F 5 HOH X 153 9155 153 HOH HOH . F 5 HOH X 154 9156 154 HOH HOH . F 5 HOH X 155 9157 155 HOH HOH . F 5 HOH X 156 9158 156 HOH HOH . F 5 HOH X 157 9159 157 HOH HOH . F 5 HOH X 158 9160 158 HOH HOH . F 5 HOH X 159 9161 159 HOH HOH . F 5 HOH X 160 9162 160 HOH HOH . F 5 HOH X 161 9163 161 HOH HOH . F 5 HOH X 162 9164 162 HOH HOH . F 5 HOH X 163 9165 163 HOH HOH . F 5 HOH X 164 9166 164 HOH HOH . F 5 HOH X 165 9167 165 HOH HOH . F 5 HOH X 166 9168 166 HOH HOH . F 5 HOH X 167 9169 167 HOH HOH . F 5 HOH X 168 9170 168 HOH HOH . F 5 HOH X 169 9171 169 HOH HOH . F 5 HOH X 170 9172 170 HOH HOH . F 5 HOH X 171 9173 171 HOH HOH . F 5 HOH X 172 9174 172 HOH HOH . F 5 HOH X 173 9175 173 HOH HOH . F 5 HOH X 174 9176 174 HOH HOH . F 5 HOH X 175 9177 175 HOH HOH . F 5 HOH X 176 9178 176 HOH HOH . F 5 HOH X 177 9179 177 HOH HOH . F 5 HOH X 178 9180 178 HOH HOH . F 5 HOH X 179 9181 179 HOH HOH . F 5 HOH X 180 9182 180 HOH HOH . F 5 HOH X 181 9183 181 HOH HOH . F 5 HOH X 182 9184 182 HOH HOH . F 5 HOH X 183 9185 183 HOH HOH . F 5 HOH X 184 9186 184 HOH HOH . F 5 HOH X 185 9187 185 HOH HOH . F 5 HOH X 186 9188 186 HOH HOH . F 5 HOH X 187 9189 187 HOH HOH . F 5 HOH X 188 9190 188 HOH HOH . F 5 HOH X 189 9191 189 HOH HOH . F 5 HOH X 190 9192 190 HOH HOH . F 5 HOH X 191 9193 191 HOH HOH . F 5 HOH X 192 9194 192 HOH HOH . F 5 HOH X 193 9195 193 HOH HOH . F 5 HOH X 194 9196 194 HOH HOH . F 5 HOH X 195 9197 195 HOH HOH . F 5 HOH X 196 9198 196 HOH HOH . F 5 HOH X 197 9199 197 HOH HOH . F 5 HOH X 198 9200 198 HOH HOH . F 5 HOH X 199 9201 199 HOH HOH . F 5 HOH X 200 9202 200 HOH HOH . F 5 HOH X 201 9203 201 HOH HOH . F 5 HOH X 202 9204 202 HOH HOH . F 5 HOH X 203 9205 203 HOH HOH . F 5 HOH X 204 9206 204 HOH HOH . F 5 HOH X 205 9207 205 HOH HOH . F 5 HOH X 206 9208 206 HOH HOH . F 5 HOH X 207 9209 207 HOH HOH . F 5 HOH X 208 9210 208 HOH HOH . F 5 HOH X 209 9211 209 HOH HOH . F 5 HOH X 210 9212 210 HOH HOH . F 5 HOH X 211 9213 211 HOH HOH . F 5 HOH X 212 9214 212 HOH HOH . F 5 HOH X 213 9215 213 HOH HOH . F 5 HOH X 214 9216 214 HOH HOH . F 5 HOH X 215 9217 215 HOH HOH . F 5 HOH X 216 9218 216 HOH HOH . F 5 HOH X 217 9219 217 HOH HOH . F 5 HOH X 218 9220 218 HOH HOH . F 5 HOH X 219 9221 219 HOH HOH . F 5 HOH X 220 9222 220 HOH HOH . F 5 HOH X 221 9223 221 HOH HOH . F 5 HOH X 222 9224 222 HOH HOH . F 5 HOH X 223 9225 223 HOH HOH . F 5 HOH X 224 9226 224 HOH HOH . F 5 HOH X 225 9227 225 HOH HOH . F 5 HOH X 226 9228 226 HOH HOH . F 5 HOH X 227 9229 227 HOH HOH . F 5 HOH X 228 9230 228 HOH HOH . F 5 HOH X 229 9231 229 HOH HOH . F 5 HOH X 230 9232 230 HOH HOH . F 5 HOH X 231 9233 231 HOH HOH . F 5 HOH X 232 9234 232 HOH HOH . F 5 HOH X 233 9235 233 HOH HOH . F 5 HOH X 234 9236 234 HOH HOH . F 5 HOH X 235 9237 235 HOH HOH . F 5 HOH X 236 9238 236 HOH HOH . F 5 HOH X 237 9239 237 HOH HOH . F 5 HOH X 238 9240 238 HOH HOH . F 5 HOH X 239 9241 239 HOH HOH . F 5 HOH X 240 9242 240 HOH HOH . F 5 HOH X 241 9243 241 HOH HOH . F 5 HOH X 242 9244 242 HOH HOH . F 5 HOH X 243 9245 243 HOH HOH . F 5 HOH X 244 9246 244 HOH HOH . F 5 HOH X 245 9247 245 HOH HOH . F 5 HOH X 246 9248 246 HOH HOH . F 5 HOH X 247 9249 247 HOH HOH . F 5 HOH X 248 9250 248 HOH HOH . F 5 HOH X 249 9251 249 HOH HOH . F 5 HOH X 250 9252 250 HOH HOH . F 5 HOH X 251 9253 251 HOH HOH . F 5 HOH X 252 9254 252 HOH HOH . F 5 HOH X 253 9255 253 HOH HOH . F 5 HOH X 254 9256 254 HOH HOH . F 5 HOH X 255 9257 255 HOH HOH . F 5 HOH X 256 9258 256 HOH HOH . F 5 HOH X 257 9259 257 HOH HOH . F 5 HOH X 258 9260 258 HOH HOH . F 5 HOH X 259 9261 259 HOH HOH . F 5 HOH X 260 9262 260 HOH HOH . F 5 HOH X 261 9263 261 HOH HOH . F 5 HOH X 262 9264 262 HOH HOH . F 5 HOH X 263 9265 263 HOH HOH . F 5 HOH X 264 9266 264 HOH HOH . F 5 HOH X 265 9267 265 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 11.458 _atom_site.Cartn_y 51.781 _atom_site.Cartn_z 32 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 10.25 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 252 _atom_site.auth_asym_id X _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #