data_2GHG # _model_server_result.job_id R4kLpI299FmT3LXD7BGJjQ _model_server_result.datetime_utc '2025-07-02 00:14:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ghg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 2GHG # _exptl.entry_id 2GHG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 475.541 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-{5-[(S)-2-AMINO-3-(1H-INDOL-3-YL)-PROPOXYL]-PYRIDIN-3-YL}-3-[1-(1H-PYRROL-2-YL)-METH-(Z)-YLIDENE]-1,3-DIHYDRO-INDOL-2-ONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.81 _cell.angle_gamma 90 _cell.entry_id 2GHG _cell.length_a 45.162 _cell.length_b 66.087 _cell.length_c 58.492 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2GHG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C29 H25 N5 O2' _chem_comp.formula_weight 475.541 _chem_comp.id A53 _chem_comp.mon_nstd_flag . _chem_comp.name 5-{5-[(S)-2-AMINO-3-(1H-INDOL-3-YL)-PROPOXYL]-PYRIDIN-3-YL}-3-[1-(1H-PYRROL-2-YL)-METH-(Z)-YLIDENE]-1,3-DIHYDRO-INDOL-2-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 A53 doub 1 n y C1 N5 A53 sing 2 n y C1 C6 A53 sing 3 n n C2 C3 A53 sing 4 n y C2 H2 A53 sing 5 n n C3 C4 A53 doub 6 n y C3 H3 A53 sing 7 n n C4 N5 A53 sing 8 n y C4 H4 A53 sing 9 n n N5 HN5 A53 sing 10 n n C6 C7 A53 doub 11 z n C6 H6 A53 sing 12 n n C7 C8 A53 sing 13 n n C7 C11 A53 sing 14 n n C8 N9 A53 sing 15 n n C8 O12 A53 doub 16 n n N9 C10 A53 sing 17 n n N9 HN9 A53 sing 18 n n C10 C11 A53 doub 19 n y C10 C13 A53 sing 20 n y C11 C16 A53 sing 21 n y C13 C14 A53 doub 22 n y C13 H13 A53 sing 23 n n C14 C15 A53 sing 24 n y C14 H14 A53 sing 25 n n C15 C16 A53 doub 26 n y C15 C17 A53 sing 27 n y C16 H16 A53 sing 28 n n C17 C18 A53 sing 29 n y C17 C22 A53 doub 30 n y C18 N19 A53 doub 31 n y C18 H18 A53 sing 32 n n N19 C20 A53 sing 33 n y C20 C21 A53 doub 34 n y C20 H20 A53 sing 35 n n C21 C22 A53 sing 36 n y C21 O23 A53 sing 37 n n C22 H22 A53 sing 38 n n O23 C24 A53 sing 39 n n C24 C25 A53 sing 40 n n C24 H241 A53 sing 41 n n C24 H242 A53 sing 42 n n C25 C26 A53 sing 43 n n C25 N27 A53 sing 44 n n C25 H25 A53 sing 45 n n C26 C28 A53 sing 46 n n C26 H261 A53 sing 47 n n C26 H262 A53 sing 48 n n N27 H271 A53 sing 49 n n N27 H272 A53 sing 50 n n C28 C29 A53 doub 51 n y C28 C32 A53 sing 52 n y C29 N30 A53 sing 53 n y C29 H29 A53 sing 54 n n N30 C31 A53 sing 55 n y N30 H30 A53 sing 56 n n C31 C32 A53 doub 57 n y C31 C33 A53 sing 58 n y C32 C36 A53 sing 59 n y C33 C34 A53 doub 60 n y C33 H33 A53 sing 61 n n C34 C35 A53 sing 62 n y C34 H34 A53 sing 63 n n C35 C36 A53 doub 64 n y C35 H35 A53 sing 65 n n C36 H36 A53 sing 66 n n # _atom_sites.entry_id 2GHG _atom_sites.fract_transf_matrix[1][1] 0.022143 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001862 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015132 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017157 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A53 A 1 1 1 A53 A43 . C 3 HOH A 1 271 1 HOH TIP . C 3 HOH A 2 272 2 HOH TIP . C 3 HOH A 3 273 3 HOH TIP . C 3 HOH A 4 274 4 HOH TIP . C 3 HOH A 5 275 5 HOH TIP . C 3 HOH A 6 276 6 HOH TIP . C 3 HOH A 7 277 7 HOH TIP . C 3 HOH A 8 278 8 HOH TIP . C 3 HOH A 9 279 9 HOH TIP . C 3 HOH A 10 280 10 HOH TIP . C 3 HOH A 11 281 11 HOH TIP . C 3 HOH A 12 282 12 HOH TIP . C 3 HOH A 13 283 13 HOH TIP . C 3 HOH A 14 284 14 HOH TIP . C 3 HOH A 15 285 15 HOH TIP . C 3 HOH A 16 286 16 HOH TIP . C 3 HOH A 17 287 17 HOH TIP . C 3 HOH A 18 288 18 HOH TIP . C 3 HOH A 19 289 19 HOH TIP . C 3 HOH A 20 290 20 HOH TIP . C 3 HOH A 21 291 21 HOH TIP . C 3 HOH A 22 292 22 HOH TIP . C 3 HOH A 23 293 23 HOH TIP . C 3 HOH A 24 294 24 HOH TIP . C 3 HOH A 25 295 25 HOH TIP . C 3 HOH A 26 296 26 HOH TIP . C 3 HOH A 27 297 27 HOH TIP . C 3 HOH A 28 298 28 HOH TIP . C 3 HOH A 29 299 29 HOH TIP . C 3 HOH A 30 300 30 HOH TIP . C 3 HOH A 31 301 31 HOH TIP . C 3 HOH A 32 302 32 HOH TIP . C 3 HOH A 33 303 33 HOH TIP . C 3 HOH A 34 304 34 HOH TIP . C 3 HOH A 35 305 35 HOH TIP . C 3 HOH A 36 306 36 HOH TIP . C 3 HOH A 37 307 37 HOH TIP . C 3 HOH A 38 308 38 HOH TIP . C 3 HOH A 39 309 39 HOH TIP . C 3 HOH A 40 310 40 HOH TIP . C 3 HOH A 41 311 41 HOH TIP . C 3 HOH A 42 312 42 HOH TIP . C 3 HOH A 43 313 43 HOH TIP . C 3 HOH A 44 314 44 HOH TIP . C 3 HOH A 45 315 45 HOH TIP . C 3 HOH A 46 316 46 HOH TIP . C 3 HOH A 47 317 47 HOH TIP . C 3 HOH A 48 318 48 HOH TIP . C 3 HOH A 49 319 49 HOH TIP . C 3 HOH A 50 320 50 HOH TIP . C 3 HOH A 51 321 51 HOH TIP . C 3 HOH A 52 322 52 HOH TIP . C 3 HOH A 53 323 53 HOH TIP . C 3 HOH A 54 324 54 HOH TIP . C 3 HOH A 55 325 55 HOH TIP . C 3 HOH A 56 326 56 HOH TIP . C 3 HOH A 57 327 57 HOH TIP . C 3 HOH A 58 328 58 HOH TIP . C 3 HOH A 59 329 59 HOH TIP . C 3 HOH A 60 330 60 HOH TIP . C 3 HOH A 61 331 61 HOH TIP . C 3 HOH A 62 332 62 HOH TIP . C 3 HOH A 63 333 63 HOH TIP . C 3 HOH A 64 334 64 HOH TIP . C 3 HOH A 65 335 65 HOH TIP . C 3 HOH A 66 336 66 HOH TIP . C 3 HOH A 67 337 67 HOH TIP . C 3 HOH A 68 338 68 HOH TIP . C 3 HOH A 69 339 69 HOH TIP . C 3 HOH A 70 340 70 HOH TIP . C 3 HOH A 71 341 71 HOH TIP . C 3 HOH A 72 342 72 HOH TIP . C 3 HOH A 73 343 73 HOH TIP . C 3 HOH A 74 344 74 HOH TIP . C 3 HOH A 75 345 75 HOH TIP . C 3 HOH A 76 346 76 HOH TIP . C 3 HOH A 77 347 77 HOH TIP . C 3 HOH A 78 348 78 HOH TIP . C 3 HOH A 79 349 79 HOH TIP . C 3 HOH A 80 350 80 HOH TIP . C 3 HOH A 81 351 81 HOH TIP . C 3 HOH A 82 352 82 HOH TIP . C 3 HOH A 83 353 83 HOH TIP . C 3 HOH A 84 354 84 HOH TIP . C 3 HOH A 85 355 85 HOH TIP . C 3 HOH A 86 356 86 HOH TIP . C 3 HOH A 87 357 87 HOH TIP . C 3 HOH A 88 358 88 HOH TIP . C 3 HOH A 89 359 89 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A53 . . . B 2 -1.512 8.854 -19.498 1 20.72 ? C1 A53 1 A 1 HETATM 2 C C2 A53 . . . B 2 -0.524 7.951 -19.404 1 21.02 ? C2 A53 1 A 1 HETATM 3 C C3 A53 . . . B 2 0.666 8.433 -20.119 1 21.05 ? C3 A53 1 A 1 HETATM 4 C C4 A53 . . . B 2 0.412 9.637 -20.652 1 20.24 ? C4 A53 1 A 1 HETATM 5 N N5 A53 . . . B 2 -0.973 9.968 -20.288 1 19.72 ? N5 A53 1 A 1 HETATM 6 C C6 A53 . . . B 2 -2.871 8.733 -18.938 1 22.14 ? C6 A53 1 A 1 HETATM 7 C C7 A53 . . . B 2 -4.065 9.603 -19.212 1 23.63 ? C7 A53 1 A 1 HETATM 8 C C8 A53 . . . B 2 -4.237 10.815 -20.087 1 24.18 ? C8 A53 1 A 1 HETATM 9 N N9 A53 . . . B 2 -5.497 11.236 -19.979 1 24.51 ? N9 A53 1 A 1 HETATM 10 C C10 A53 . . . B 2 -6.245 10.445 -19.099 1 24.31 ? C10 A53 1 A 1 HETATM 11 C C11 A53 . . . B 2 -5.376 9.389 -18.587 1 23.57 ? C11 A53 1 A 1 HETATM 12 O O12 A53 . . . B 2 -3.367 11.316 -20.784 1 24.06 ? O12 A53 1 A 1 HETATM 13 C C13 A53 . . . B 2 -7.627 10.436 -18.61 1 25.2 ? C13 A53 1 A 1 HETATM 14 C C14 A53 . . . B 2 -8.109 9.474 -17.695 1 25.68 ? C14 A53 1 A 1 HETATM 15 C C15 A53 . . . B 2 -7.281 8.448 -17.195 1 26.6 ? C15 A53 1 A 1 HETATM 16 C C16 A53 . . . B 2 -5.937 8.423 -17.644 1 24.78 ? C16 A53 1 A 1 HETATM 17 C C17 A53 . . . B 2 -7.801 7.405 -16.213 1 28.59 ? C17 A53 1 A 1 HETATM 18 C C18 A53 . . . B 2 -9.168 7.299 -15.85 1 29.13 ? C18 A53 1 A 1 HETATM 19 N N19 A53 . . . B 2 -9.621 6.353 -14.969 1 29.57 ? N19 A53 1 A 1 HETATM 20 C C20 A53 . . . B 2 -8.752 5.471 -14.403 1 30.21 ? C20 A53 1 A 1 HETATM 21 C C21 A53 . . . B 2 -7.373 5.489 -14.695 1 30.92 ? C21 A53 1 A 1 HETATM 22 C C22 A53 . . . B 2 -6.919 6.476 -15.61 1 29.58 ? C22 A53 1 A 1 HETATM 23 O O23 A53 . . . B 2 -6.551 4.537 -14.064 1 32.83 ? O23 A53 1 A 1 HETATM 24 C C24 A53 . . . B 2 -5.887 3.594 -14.907 1 36.12 ? C24 A53 1 A 1 HETATM 25 C C25 A53 . . . B 2 -6.683 2.286 -14.922 1 37.53 ? C25 A53 1 A 1 HETATM 26 C C26 A53 . . . B 2 -5.789 1.086 -15.284 1 38.24 ? C26 A53 1 A 1 HETATM 27 N N27 A53 . . . B 2 -7.791 2.422 -15.87 1 36.31 ? N27 A53 1 A 1 HETATM 28 C C28 A53 . . . B 2 -5.65 0.163 -14.085 1 39.91 ? C28 A53 1 A 1 HETATM 29 C C29 A53 . . . B 2 -6.701 -0.444 -13.383 1 40.7 ? C29 A53 1 A 1 HETATM 30 N N30 A53 . . . B 2 -6.203 -1.2 -12.376 1 42.02 ? N30 A53 1 A 1 HETATM 31 C C31 A53 . . . B 2 -4.817 -1.134 -12.359 1 41.23 ? C31 A53 1 A 1 HETATM 32 C C32 A53 . . . B 2 -4.426 -0.271 -13.446 1 40.72 ? C32 A53 1 A 1 HETATM 33 C C33 A53 . . . B 2 -3.846 -1.718 -11.545 1 40.82 ? C33 A53 1 A 1 HETATM 34 C C34 A53 . . . B 2 -2.466 -1.46 -11.78 1 41.48 ? C34 A53 1 A 1 HETATM 35 C C35 A53 . . . B 2 -2.075 -0.606 -12.851 1 41.6 ? C35 A53 1 A 1 HETATM 36 C C36 A53 . . . B 2 -3.07 -0.011 -13.679 1 41.17 ? C36 A53 1 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #