data_2GIV # _model_server_result.job_id 5dbAod15bZmBO5l0SJkF-g _model_server_result.datetime_utc '2024-11-24 20:57:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2giv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 2GIV # _exptl.entry_id 2GIV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2GIV _cell.length_a 46.305 _cell.length_b 58.577 _cell.length_c 119.753 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2GIV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 119 A HIS 100 1_555 A N ALY 120 A ALY 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.613 ? covale ? covale2 A C ALY 120 A ALY 101 1_555 A N THR 121 A THR 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 A SG CYS 56 A CYS 37 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc2 A SG CYS 59 A CYS 40 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc3 A NE2 HIS 72 A HIS 53 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc4 A SG CYS 76 A CYS 57 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2GIV _atom_sites.fract_transf_matrix[1][1] 0.021596 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017072 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008351 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 501 501 ZN ZN . C 3 CL A 1 502 502 CL CL . D 4 ACO A 1 500 500 ACO ACO . E 5 HOH A 1 503 1 HOH HOH . E 5 HOH A 2 504 2 HOH HOH . E 5 HOH A 3 505 3 HOH HOH . E 5 HOH A 4 506 4 HOH HOH . E 5 HOH A 5 507 5 HOH HOH . E 5 HOH A 6 508 6 HOH HOH . E 5 HOH A 7 509 7 HOH HOH . E 5 HOH A 8 510 8 HOH HOH . E 5 HOH A 9 511 9 HOH HOH . E 5 HOH A 10 512 10 HOH HOH . E 5 HOH A 11 513 11 HOH HOH . E 5 HOH A 12 514 12 HOH HOH . E 5 HOH A 13 515 13 HOH HOH . E 5 HOH A 14 516 14 HOH HOH . E 5 HOH A 15 517 15 HOH HOH . E 5 HOH A 16 518 16 HOH HOH . E 5 HOH A 17 519 17 HOH HOH . E 5 HOH A 18 520 18 HOH HOH . E 5 HOH A 19 521 19 HOH HOH . E 5 HOH A 20 522 20 HOH HOH . E 5 HOH A 21 523 21 HOH HOH . E 5 HOH A 22 524 22 HOH HOH . E 5 HOH A 23 525 23 HOH HOH . E 5 HOH A 24 526 24 HOH HOH . E 5 HOH A 25 527 25 HOH HOH . E 5 HOH A 26 528 26 HOH HOH . E 5 HOH A 27 529 27 HOH HOH . E 5 HOH A 28 530 28 HOH HOH . E 5 HOH A 29 531 29 HOH HOH . E 5 HOH A 30 532 30 HOH HOH . E 5 HOH A 31 533 31 HOH HOH . E 5 HOH A 32 534 32 HOH HOH . E 5 HOH A 33 535 33 HOH HOH . E 5 HOH A 34 536 34 HOH HOH . E 5 HOH A 35 537 35 HOH HOH . E 5 HOH A 36 538 36 HOH HOH . E 5 HOH A 37 539 37 HOH HOH . E 5 HOH A 38 540 38 HOH HOH . E 5 HOH A 39 541 39 HOH HOH . E 5 HOH A 40 542 40 HOH HOH . E 5 HOH A 41 543 41 HOH HOH . E 5 HOH A 42 544 42 HOH HOH . E 5 HOH A 43 545 43 HOH HOH . E 5 HOH A 44 546 44 HOH HOH . E 5 HOH A 45 547 45 HOH HOH . E 5 HOH A 46 548 46 HOH HOH . E 5 HOH A 47 549 47 HOH HOH . E 5 HOH A 48 550 48 HOH HOH . E 5 HOH A 49 551 49 HOH HOH . E 5 HOH A 50 552 50 HOH HOH . E 5 HOH A 51 553 51 HOH HOH . E 5 HOH A 52 554 52 HOH HOH . E 5 HOH A 53 555 53 HOH HOH . E 5 HOH A 54 556 54 HOH HOH . E 5 HOH A 55 557 55 HOH HOH . E 5 HOH A 56 558 56 HOH HOH . E 5 HOH A 57 559 57 HOH HOH . E 5 HOH A 58 560 58 HOH HOH . E 5 HOH A 59 561 59 HOH HOH . E 5 HOH A 60 562 60 HOH HOH . E 5 HOH A 61 563 61 HOH HOH . E 5 HOH A 62 564 62 HOH HOH . E 5 HOH A 63 565 63 HOH HOH . E 5 HOH A 64 566 64 HOH HOH . E 5 HOH A 65 567 65 HOH HOH . E 5 HOH A 66 568 66 HOH HOH . E 5 HOH A 67 569 67 HOH HOH . E 5 HOH A 68 570 68 HOH HOH . E 5 HOH A 69 571 69 HOH HOH . E 5 HOH A 70 572 70 HOH HOH . E 5 HOH A 71 573 71 HOH HOH . E 5 HOH A 72 574 72 HOH HOH . E 5 HOH A 73 575 73 HOH HOH . E 5 HOH A 74 576 74 HOH HOH . E 5 HOH A 75 577 75 HOH HOH . E 5 HOH A 76 578 76 HOH HOH . E 5 HOH A 77 579 77 HOH HOH . E 5 HOH A 78 580 78 HOH HOH . E 5 HOH A 79 581 79 HOH HOH . E 5 HOH A 80 582 80 HOH HOH . E 5 HOH A 81 583 81 HOH HOH . E 5 HOH A 82 584 82 HOH HOH . E 5 HOH A 83 585 83 HOH HOH . E 5 HOH A 84 586 84 HOH HOH . E 5 HOH A 85 587 85 HOH HOH . E 5 HOH A 86 588 86 HOH HOH . E 5 HOH A 87 589 87 HOH HOH . E 5 HOH A 88 590 88 HOH HOH . E 5 HOH A 89 591 89 HOH HOH . E 5 HOH A 90 592 90 HOH HOH . E 5 HOH A 91 593 91 HOH HOH . E 5 HOH A 92 594 92 HOH HOH . E 5 HOH A 93 595 93 HOH HOH . E 5 HOH A 94 596 94 HOH HOH . E 5 HOH A 95 597 95 HOH HOH . E 5 HOH A 96 598 96 HOH HOH . E 5 HOH A 97 599 97 HOH HOH . E 5 HOH A 98 600 98 HOH HOH . E 5 HOH A 99 601 99 HOH HOH . E 5 HOH A 100 602 100 HOH HOH . E 5 HOH A 101 603 101 HOH HOH . E 5 HOH A 102 604 102 HOH HOH . E 5 HOH A 103 605 103 HOH HOH . E 5 HOH A 104 606 104 HOH HOH . E 5 HOH A 105 607 105 HOH HOH . E 5 HOH A 106 608 106 HOH HOH . E 5 HOH A 107 609 107 HOH HOH . E 5 HOH A 108 610 108 HOH HOH . E 5 HOH A 109 611 109 HOH HOH . E 5 HOH A 110 612 110 HOH HOH . E 5 HOH A 111 613 111 HOH HOH . E 5 HOH A 112 614 112 HOH HOH . E 5 HOH A 113 615 113 HOH HOH . E 5 HOH A 114 616 114 HOH HOH . E 5 HOH A 115 617 115 HOH HOH . E 5 HOH A 116 618 116 HOH HOH . E 5 HOH A 117 619 117 HOH HOH . E 5 HOH A 118 620 118 HOH HOH . E 5 HOH A 119 621 119 HOH HOH . E 5 HOH A 120 622 120 HOH HOH . E 5 HOH A 121 623 121 HOH HOH . E 5 HOH A 122 624 122 HOH HOH . E 5 HOH A 123 625 123 HOH HOH . E 5 HOH A 124 626 124 HOH HOH . E 5 HOH A 125 627 125 HOH HOH . E 5 HOH A 126 628 126 HOH HOH . E 5 HOH A 127 629 127 HOH HOH . E 5 HOH A 128 630 128 HOH HOH . E 5 HOH A 129 631 129 HOH HOH . E 5 HOH A 130 632 130 HOH HOH . E 5 HOH A 131 633 131 HOH HOH . E 5 HOH A 132 634 132 HOH HOH . E 5 HOH A 133 635 133 HOH HOH . E 5 HOH A 134 636 134 HOH HOH . E 5 HOH A 135 637 135 HOH HOH . E 5 HOH A 136 638 136 HOH HOH . E 5 HOH A 137 639 137 HOH HOH . E 5 HOH A 138 640 138 HOH HOH . E 5 HOH A 139 641 139 HOH HOH . E 5 HOH A 140 642 140 HOH HOH . E 5 HOH A 141 643 141 HOH HOH . E 5 HOH A 142 644 142 HOH HOH . E 5 HOH A 143 645 143 HOH HOH . E 5 HOH A 144 646 144 HOH HOH . E 5 HOH A 145 647 145 HOH HOH . E 5 HOH A 146 648 146 HOH HOH . E 5 HOH A 147 649 147 HOH HOH . E 5 HOH A 148 650 148 HOH HOH . E 5 HOH A 149 651 149 HOH HOH . E 5 HOH A 150 652 150 HOH HOH . E 5 HOH A 151 653 151 HOH HOH . E 5 HOH A 152 654 152 HOH HOH . E 5 HOH A 153 655 153 HOH HOH . E 5 HOH A 154 656 154 HOH HOH . E 5 HOH A 155 657 156 HOH HOH . E 5 HOH A 156 658 157 HOH HOH . E 5 HOH A 157 659 158 HOH HOH . E 5 HOH A 158 660 159 HOH HOH . E 5 HOH A 159 661 160 HOH HOH . E 5 HOH A 160 662 161 HOH HOH . E 5 HOH A 161 663 162 HOH HOH . E 5 HOH A 162 664 163 HOH HOH . E 5 HOH A 163 665 164 HOH HOH . E 5 HOH A 164 666 165 HOH HOH . E 5 HOH A 165 667 166 HOH HOH . E 5 HOH A 166 668 167 HOH HOH . E 5 HOH A 167 669 168 HOH HOH . E 5 HOH A 168 670 171 HOH HOH . E 5 HOH A 169 671 172 HOH HOH . E 5 HOH A 170 672 173 HOH HOH . E 5 HOH A 171 673 174 HOH HOH . E 5 HOH A 172 674 175 HOH HOH . E 5 HOH A 173 675 176 HOH HOH . E 5 HOH A 174 676 177 HOH HOH . E 5 HOH A 175 677 178 HOH HOH . E 5 HOH A 176 678 179 HOH HOH . E 5 HOH A 177 679 180 HOH HOH . E 5 HOH A 178 680 181 HOH HOH . E 5 HOH A 179 681 182 HOH HOH . E 5 HOH A 180 682 183 HOH HOH . E 5 HOH A 181 683 184 HOH HOH . E 5 HOH A 182 684 185 HOH HOH . E 5 HOH A 183 685 186 HOH HOH . E 5 HOH A 184 686 187 HOH HOH . E 5 HOH A 185 687 189 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -5.485 _atom_site.Cartn_y 22.466 _atom_site.Cartn_z 6.879 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 25.31 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #