data_2GJ6
#
_model_server_result.job_id            Jk9DBc2nfCktah-kFoe6HQ 
_model_server_result.datetime_utc      '2024-11-01 11:24:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2gj6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"T","auth_seq_id":405}' 
#
_entry.id    2GJ6 
#
_exptl.entry_id    2GJ6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    13 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.34 
_cell.angle_gamma         90 
_cell.entry_id            2GJ6 
_cell.length_a            223.846 
_cell.length_b            49.019 
_cell.length_c            94.17 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2GJ6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 H N N 
? 7 I N N 
? 7 K N N 
? 7 L N N 
? 7 M N N 
? 7 N N N 
? 7 O N N 
? 7 P N N 
? 7 Q N N 
? 7 R N N 
? 7 T N N 
? 7 W N N 
? 7 X N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? 
disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf4 D SG CYS 22 D CYS 22 1_555 D SG CYS 88 D CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf5 D SG CYS 133 D CYS 139 1_555 D SG CYS 183 D CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
disulf ? disulf6 E SG CYS 23 E CYS 23 1_555 E SG CYS 91 E CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? 
disulf ? disulf7 E SG CYS 146 E CYS 147 1_555 E SG CYS 211 E CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
covale ? covale1 C NZ LYS 5 C LYS 5 1_555 S C13 3IB . C 3IB 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 158 n n 
C1 C2 GOL sing 159 n n 
C1 H11 GOL sing 160 n n 
C1 H12 GOL sing 161 n n 
O1 HO1 GOL sing 162 n n 
C2 O2 GOL sing 163 n n 
C2 C3 GOL sing 164 n n 
C2 H2 GOL sing 165 n n 
O2 HO2 GOL sing 166 n n 
C3 O3 GOL sing 167 n n 
C3 H31 GOL sing 168 n n 
C3 H32 GOL sing 169 n n 
O3 HO3 GOL sing 170 n n 
#
_atom_sites.entry_id                     2GJ6 
_atom_sites.fract_transf_matrix[1][1]    0.004467 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000027 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0204 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010619 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 6 SO4 A 1 416 3 SO4 SO4 . 
G 6 SO4 A 1 418 5 SO4 SO4 . 
H 7 GOL A 1 402 2 GOL GOL . 
I 7 GOL A 1 413 13 GOL GOL . 
J 6 SO4 B 1 417 4 SO4 SO4 . 
K 7 GOL B 1 401 1 GOL GOL . 
L 7 GOL B 1 403 3 GOL GOL . 
M 7 GOL B 1 406 6 GOL GOL . 
N 7 GOL B 1 407 7 GOL GOL . 
O 7 GOL B 1 408 8 GOL GOL . 
P 7 GOL B 1 409 9 GOL GOL . 
Q 7 GOL B 1 411 11 GOL GOL . 
R 7 GOL B 1 412 12 GOL GOL . 
S 8 3IB C 1 10 5 3IB LYI . 
T 7 GOL C 1 405 5 GOL GOL . 
U 6 SO4 E 1 414 1 SO4 SO4 . 
V 6 SO4 E 1 415 2 SO4 SO4 . 
W 7 GOL E 1 404 4 GOL GOL . 
X 7 GOL E 1 410 10 GOL GOL . 
Y 9 HOH A 1 419 6 HOH HOH . 
Y 9 HOH A 2 420 8 HOH HOH . 
Y 9 HOH A 3 421 11 HOH HOH . 
Y 9 HOH A 4 422 12 HOH HOH . 
Y 9 HOH A 5 423 13 HOH HOH . 
Y 9 HOH A 6 424 14 HOH HOH . 
Y 9 HOH A 7 425 15 HOH HOH . 
Y 9 HOH A 8 426 17 HOH HOH . 
Y 9 HOH A 9 427 18 HOH HOH . 
Y 9 HOH A 10 428 19 HOH HOH . 
Y 9 HOH A 11 429 23 HOH HOH . 
Y 9 HOH A 12 430 24 HOH HOH . 
Y 9 HOH A 13 431 26 HOH HOH . 
Y 9 HOH A 14 432 27 HOH HOH . 
Y 9 HOH A 15 433 28 HOH HOH . 
Y 9 HOH A 16 434 30 HOH HOH . 
Y 9 HOH A 17 435 31 HOH HOH . 
Y 9 HOH A 18 436 35 HOH HOH . 
Y 9 HOH A 19 437 37 HOH HOH . 
Y 9 HOH A 20 438 44 HOH HOH . 
Y 9 HOH A 21 439 45 HOH HOH . 
Y 9 HOH A 22 440 46 HOH HOH . 
Y 9 HOH A 23 441 48 HOH HOH . 
Y 9 HOH A 24 442 53 HOH HOH . 
Y 9 HOH A 25 443 57 HOH HOH . 
Y 9 HOH A 26 444 58 HOH HOH . 
Y 9 HOH A 27 445 60 HOH HOH . 
Y 9 HOH A 28 446 62 HOH HOH . 
Y 9 HOH A 29 447 63 HOH HOH . 
Y 9 HOH A 30 448 65 HOH HOH . 
Y 9 HOH A 31 449 66 HOH HOH . 
Y 9 HOH A 32 450 67 HOH HOH . 
Y 9 HOH A 33 451 68 HOH HOH . 
Y 9 HOH A 34 452 69 HOH HOH . 
Y 9 HOH A 35 453 70 HOH HOH . 
Y 9 HOH A 36 454 73 HOH HOH . 
Y 9 HOH A 37 455 75 HOH HOH . 
Y 9 HOH A 38 456 87 HOH HOH . 
Y 9 HOH A 39 457 88 HOH HOH . 
Z 9 HOH B 1 418 1 HOH HOH . 
Z 9 HOH B 2 419 2 HOH HOH . 
Z 9 HOH B 3 420 3 HOH HOH . 
Z 9 HOH B 4 421 7 HOH HOH . 
Z 9 HOH B 5 422 25 HOH HOH . 
Z 9 HOH B 6 423 29 HOH HOH . 
Z 9 HOH B 7 424 32 HOH HOH . 
Z 9 HOH B 8 425 33 HOH HOH . 
Z 9 HOH B 9 426 34 HOH HOH . 
Z 9 HOH B 10 427 36 HOH HOH . 
Z 9 HOH B 11 428 40 HOH HOH . 
Z 9 HOH B 12 429 49 HOH HOH . 
Z 9 HOH B 13 430 56 HOH HOH . 
Z 9 HOH B 14 431 61 HOH HOH . 
Z 9 HOH B 15 432 71 HOH HOH . 
Z 9 HOH B 16 433 74 HOH HOH . 
Z 9 HOH B 17 434 77 HOH HOH . 
Z 9 HOH B 18 435 84 HOH HOH . 
Z 9 HOH B 19 436 86 HOH HOH . 
AA 9 HOH C 1 41 41 HOH HOH . 
BA 9 HOH D 1 207 5 HOH HOH . 
BA 9 HOH D 2 208 9 HOH HOH . 
BA 9 HOH D 3 209 10 HOH HOH . 
BA 9 HOH D 4 210 16 HOH HOH . 
BA 9 HOH D 5 211 22 HOH HOH . 
BA 9 HOH D 6 212 38 HOH HOH . 
BA 9 HOH D 7 213 42 HOH HOH . 
BA 9 HOH D 8 214 43 HOH HOH . 
BA 9 HOH D 9 215 64 HOH HOH . 
BA 9 HOH D 10 216 72 HOH HOH . 
BA 9 HOH D 11 217 80 HOH HOH . 
BA 9 HOH D 12 218 81 HOH HOH . 
BA 9 HOH D 13 219 82 HOH HOH . 
BA 9 HOH D 14 220 83 HOH HOH . 
CA 9 HOH E 1 416 4 HOH HOH . 
CA 9 HOH E 2 417 20 HOH HOH . 
CA 9 HOH E 3 418 21 HOH HOH . 
CA 9 HOH E 4 419 39 HOH HOH . 
CA 9 HOH E 5 420 47 HOH HOH . 
CA 9 HOH E 6 421 50 HOH HOH . 
CA 9 HOH E 7 422 51 HOH HOH . 
CA 9 HOH E 8 423 52 HOH HOH . 
CA 9 HOH E 9 424 54 HOH HOH . 
CA 9 HOH E 10 425 55 HOH HOH . 
CA 9 HOH E 11 426 59 HOH HOH . 
CA 9 HOH E 12 427 76 HOH HOH . 
CA 9 HOH E 13 428 78 HOH HOH . 
CA 9 HOH E 14 429 79 HOH HOH . 
CA 9 HOH E 15 430 85 HOH HOH . 
CA 9 HOH E 16 431 89 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . T 7 71.783 10.367 13.796 0.5 38.95 ? C1 GOL 405 C 1 
HETATM 2 O O1 GOL . . . T 7 72.879 11.264 13.823 0.5 39.8 ? O1 GOL 405 C 1 
HETATM 3 C C2 GOL . . . T 7 71.91 9.406 14.968 0.5 38.49 ? C2 GOL 405 C 1 
HETATM 4 O O2 GOL . . . T 7 70.655 9.303 15.595 0.5 38.55 ? O2 GOL 405 C 1 
HETATM 5 C C3 GOL . . . T 7 72.279 8.028 14.449 0.5 36.53 ? C3 GOL 405 C 1 
HETATM 6 O O3 GOL . . . T 7 71.153 7.208 14.644 0.5 33.64 ? O3 GOL 405 C 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    34 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           6 
#