data_2GJK
#
_model_server_result.job_id            LZ6txz4iIMruPSuKbPkloA 
_model_server_result.datetime_utc      '2024-12-21 12:11:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2gjk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":990}' 
#
_entry.id    2GJK 
#
_exptl.entry_id    2GJK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2GJK 
_cell.length_a            188.979 
_cell.length_b            188.979 
_cell.length_c            44.872 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2GJK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 209 A THR 499 1_555 B MG MG . A MG 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? 
metalc ? metalc2 C O1G ANP . A ANP 990 1_555 B MG MG . A MG 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc3 C O2B ANP . A ANP 990 1_555 B MG MG . A MG 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 13 n n 
PG O2G ANP sing 14 n n 
PG O3G ANP sing 15 n n 
PG N3B ANP sing 16 n n 
O2G HOG2 ANP sing 17 n n 
O3G HOG3 ANP sing 18 n n 
PB O1B ANP doub 19 n n 
PB O2B ANP sing 20 n n 
PB N3B ANP sing 21 n n 
PB O3A ANP sing 22 n n 
O2B HOB2 ANP sing 23 n n 
N3B HNB1 ANP sing 24 n n 
PA O1A ANP doub 25 n n 
PA O2A ANP sing 26 n n 
PA O3A ANP sing 27 n n 
PA O5' ANP sing 28 n n 
O2A HOA2 ANP sing 29 n n 
O5' C5' ANP sing 30 n n 
C5' C4' ANP sing 31 n n 
C5' "H5'1" ANP sing 32 n n 
C5' "H5'2" ANP sing 33 n n 
C4' O4' ANP sing 34 n n 
C4' C3' ANP sing 35 n n 
C4' H4' ANP sing 36 n n 
O4' C1' ANP sing 37 n n 
C3' O3' ANP sing 38 n n 
C3' C2' ANP sing 39 n n 
C3' H3' ANP sing 40 n n 
O3' HO3' ANP sing 41 n n 
C2' O2' ANP sing 42 n n 
C2' C1' ANP sing 43 n n 
C2' H2' ANP sing 44 n n 
O2' HO2' ANP sing 45 n n 
C1' N9 ANP sing 46 n n 
C1' H1' ANP sing 47 n n 
N9 C8 ANP sing 48 n y 
N9 C4 ANP sing 49 n y 
C8 N7 ANP doub 50 n y 
C8 H8 ANP sing 51 n n 
N7 C5 ANP sing 52 n y 
C5 C6 ANP sing 53 n y 
C5 C4 ANP doub 54 n y 
C6 N6 ANP sing 55 n n 
C6 N1 ANP doub 56 n y 
N6 HN61 ANP sing 57 n n 
N6 HN62 ANP sing 58 n n 
N1 C2 ANP sing 59 n y 
C2 N3 ANP doub 60 n y 
C2 H2 ANP sing 61 n n 
N3 C4 ANP sing 62 n y 
#
_atom_sites.entry_id                     2GJK 
_atom_sites.fract_transf_matrix[1][1]    0.005292 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005292 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022286 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 1000 1000 MG MG . 
C 3 ANP A 1 990 990 ANP ANP . 
D 4 HOH A 1 1 1 HOH HOH . 
D 4 HOH A 2 2 2 HOH HOH . 
D 4 HOH A 3 3 3 HOH HOH . 
D 4 HOH A 4 4 4 HOH HOH . 
D 4 HOH A 5 5 5 HOH HOH . 
D 4 HOH A 6 6 6 HOH HOH . 
D 4 HOH A 7 7 7 HOH HOH . 
D 4 HOH A 8 8 8 HOH HOH . 
D 4 HOH A 9 9 9 HOH HOH . 
D 4 HOH A 10 10 10 HOH HOH . 
D 4 HOH A 11 11 11 HOH HOH . 
D 4 HOH A 12 12 12 HOH HOH . 
D 4 HOH A 13 13 13 HOH HOH . 
D 4 HOH A 14 14 14 HOH HOH . 
D 4 HOH A 15 15 15 HOH HOH . 
D 4 HOH A 16 16 16 HOH HOH . 
D 4 HOH A 17 17 17 HOH HOH . 
D 4 HOH A 18 18 18 HOH HOH . 
D 4 HOH A 19 19 19 HOH HOH . 
D 4 HOH A 20 20 20 HOH HOH . 
D 4 HOH A 21 21 21 HOH HOH . 
D 4 HOH A 22 22 22 HOH HOH . 
D 4 HOH A 23 23 23 HOH HOH . 
D 4 HOH A 24 24 24 HOH HOH . 
D 4 HOH A 25 25 25 HOH HOH . 
D 4 HOH A 26 26 26 HOH HOH . 
D 4 HOH A 27 27 27 HOH HOH . 
D 4 HOH A 28 28 28 HOH HOH . 
D 4 HOH A 29 29 29 HOH HOH . 
D 4 HOH A 30 30 30 HOH HOH . 
D 4 HOH A 31 31 31 HOH HOH . 
D 4 HOH A 32 32 32 HOH HOH . 
D 4 HOH A 33 33 33 HOH HOH . 
D 4 HOH A 34 34 34 HOH HOH . 
D 4 HOH A 35 35 35 HOH HOH . 
D 4 HOH A 36 36 36 HOH HOH . 
D 4 HOH A 37 37 37 HOH HOH . 
D 4 HOH A 38 38 38 HOH HOH . 
D 4 HOH A 39 39 39 HOH HOH . 
D 4 HOH A 40 40 40 HOH HOH . 
D 4 HOH A 41 41 41 HOH HOH . 
D 4 HOH A 42 42 42 HOH HOH . 
D 4 HOH A 43 43 43 HOH HOH . 
D 4 HOH A 44 44 44 HOH HOH . 
D 4 HOH A 45 45 45 HOH HOH . 
D 4 HOH A 46 46 46 HOH HOH . 
D 4 HOH A 47 47 47 HOH HOH . 
D 4 HOH A 48 48 48 HOH HOH . 
D 4 HOH A 49 49 49 HOH HOH . 
D 4 HOH A 50 50 50 HOH HOH . 
D 4 HOH A 51 51 51 HOH HOH . 
D 4 HOH A 52 52 52 HOH HOH . 
D 4 HOH A 53 53 53 HOH HOH . 
D 4 HOH A 54 54 54 HOH HOH . 
D 4 HOH A 55 55 55 HOH HOH . 
D 4 HOH A 56 56 56 HOH HOH . 
D 4 HOH A 57 57 57 HOH HOH . 
D 4 HOH A 58 58 58 HOH HOH . 
D 4 HOH A 59 59 59 HOH HOH . 
D 4 HOH A 60 60 60 HOH HOH . 
D 4 HOH A 61 61 61 HOH HOH . 
D 4 HOH A 62 62 62 HOH HOH . 
D 4 HOH A 63 63 63 HOH HOH . 
D 4 HOH A 64 64 64 HOH HOH . 
D 4 HOH A 65 65 65 HOH HOH . 
D 4 HOH A 66 66 66 HOH HOH . 
D 4 HOH A 67 67 67 HOH HOH . 
D 4 HOH A 68 68 68 HOH HOH . 
D 4 HOH A 69 69 69 HOH HOH . 
D 4 HOH A 70 70 70 HOH HOH . 
D 4 HOH A 71 71 71 HOH HOH . 
D 4 HOH A 72 72 72 HOH HOH . 
D 4 HOH A 73 73 73 HOH HOH . 
D 4 HOH A 74 74 74 HOH HOH . 
D 4 HOH A 75 75 75 HOH HOH . 
D 4 HOH A 76 76 76 HOH HOH . 
D 4 HOH A 77 77 77 HOH HOH . 
D 4 HOH A 78 78 78 HOH HOH . 
D 4 HOH A 79 79 79 HOH HOH . 
D 4 HOH A 80 80 80 HOH HOH . 
D 4 HOH A 81 81 81 HOH HOH . 
D 4 HOH A 82 82 82 HOH HOH . 
D 4 HOH A 83 83 83 HOH HOH . 
D 4 HOH A 84 84 84 HOH HOH . 
D 4 HOH A 85 85 85 HOH HOH . 
D 4 HOH A 86 86 86 HOH HOH . 
D 4 HOH A 87 87 87 HOH HOH . 
D 4 HOH A 88 88 88 HOH HOH . 
D 4 HOH A 89 89 89 HOH HOH . 
D 4 HOH A 90 90 90 HOH HOH . 
D 4 HOH A 91 91 91 HOH HOH . 
D 4 HOH A 92 92 92 HOH HOH . 
D 4 HOH A 93 93 93 HOH HOH . 
D 4 HOH A 94 94 94 HOH HOH . 
D 4 HOH A 95 95 95 HOH HOH . 
D 4 HOH A 96 96 96 HOH HOH . 
D 4 HOH A 97 97 97 HOH HOH . 
D 4 HOH A 98 98 98 HOH HOH . 
D 4 HOH A 99 99 99 HOH HOH . 
D 4 HOH A 100 100 100 HOH HOH . 
D 4 HOH A 101 101 101 HOH HOH . 
D 4 HOH A 102 102 102 HOH HOH . 
D 4 HOH A 103 103 103 HOH HOH . 
D 4 HOH A 104 104 104 HOH HOH . 
D 4 HOH A 105 105 105 HOH HOH . 
D 4 HOH A 106 106 106 HOH HOH . 
D 4 HOH A 107 107 107 HOH HOH . 
D 4 HOH A 108 108 108 HOH HOH . 
D 4 HOH A 109 109 109 HOH HOH . 
D 4 HOH A 110 110 110 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . C 3 33.405 82.097 16.185 1 38.45 ? PG ANP 990 A 1 
HETATM 2 O O1G ANP . . . C 3 32.287 80.991 16.373 1 39.05 ? O1G ANP 990 A 1 
HETATM 3 O O2G ANP . . . C 3 34.84 81.457 16.073 1 39.86 ? O2G ANP 990 A 1 
HETATM 4 O O3G ANP . . . C 3 33.133 82.968 14.882 1 39.89 ? O3G ANP 990 A 1 
HETATM 5 P PB ANP . . . C 3 31.895 83.849 18.052 1 39.67 ? PB ANP 990 A 1 
HETATM 6 O O1B ANP . . . C 3 31.58 85.034 17.065 1 39.91 ? O1B ANP 990 A 1 
HETATM 7 O O2B ANP . . . C 3 30.76 82.74 18.015 1 40.83 ? O2B ANP 990 A 1 
HETATM 8 N N3B ANP . . . C 3 33.387 83.107 17.583 1 39.9 ? N3B ANP 990 A 1 
HETATM 9 P PA ANP . . . C 3 31.596 83.735 20.835 1 42.58 ? PA ANP 990 A 1 
HETATM 10 O O1A ANP . . . C 3 30.103 84.183 21.1 1 43.72 ? O1A ANP 990 A 1 
HETATM 11 O O2A ANP . . . C 3 31.678 82.153 20.743 1 44.24 ? O2A ANP 990 A 1 
HETATM 12 O O3A ANP . . . C 3 32.153 84.443 19.513 1 42.15 ? O3A ANP 990 A 1 
HETATM 13 O O5' ANP . . . C 3 32.601 84.317 21.932 1 45.68 ? O5' ANP 990 A 1 
HETATM 14 C C5' ANP . . . C 3 32.236 84.18 23.296 1 48.48 ? C5' ANP 990 A 1 
HETATM 15 C C4' ANP . . . C 3 33.383 84.617 24.183 1 49.58 ? C4' ANP 990 A 1 
HETATM 16 O O4' ANP . . . C 3 33.687 85.98 23.901 1 50.13 ? O4' ANP 990 A 1 
HETATM 17 C C3' ANP . . . C 3 32.952 84.496 25.631 1 50.56 ? C3' ANP 990 A 1 
HETATM 18 O O3' ANP . . . C 3 33.872 83.658 26.311 1 51.19 ? O3' ANP 990 A 1 
HETATM 19 C C2' ANP . . . C 3 32.975 85.902 26.193 1 51.3 ? C2' ANP 990 A 1 
HETATM 20 O O2' ANP . . . C 3 33.826 85.992 27.334 1 52.46 ? O2' ANP 990 A 1 
HETATM 21 C C1' ANP . . . C 3 33.458 86.797 25.053 1 50.97 ? C1' ANP 990 A 1 
HETATM 22 N N9 ANP . . . C 3 32.452 87.843 24.745 1 50.69 ? N9 ANP 990 A 1 
HETATM 23 C C8 ANP . . . C 3 31.544 87.863 23.735 1 50.75 ? C8 ANP 990 A 1 
HETATM 24 N N7 ANP . . . C 3 30.771 88.997 23.754 1 50.57 ? N7 ANP 990 A 1 
HETATM 25 C C5 ANP . . . C 3 31.188 89.73 24.798 1 50.62 ? C5 ANP 990 A 1 
HETATM 26 C C6 ANP . . . C 3 30.887 91.018 25.47 1 50.39 ? C6 ANP 990 A 1 
HETATM 27 N N6 ANP . . . C 3 29.907 91.813 24.989 1 49.95 ? N6 ANP 990 A 1 
HETATM 28 N N1 ANP . . . C 3 31.605 91.38 26.563 1 50.31 ? N1 ANP 990 A 1 
HETATM 29 C C2 ANP . . . C 3 32.591 90.63 27.092 1 49.96 ? C2 ANP 990 A 1 
HETATM 30 N N3 ANP . . . C 3 32.955 89.447 26.573 1 50.03 ? N3 ANP 990 A 1 
HETATM 31 C C4 ANP . . . C 3 32.258 88.968 25.408 1 50.62 ? C4 ANP 990 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           992 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           31 
#