data_2GKL
#
_model_server_result.job_id            tHF2lMslc1RzsP63uoZxIQ 
_model_server_result.datetime_utc      '2024-12-07 09:32:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2gkl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    2GKL 
#
_exptl.entry_id    2GKL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2GKL 
_cell.length_a            42.638 
_cell.length_b            101.211 
_cell.length_c            117.121 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2GKL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C N1 PD2 . A PD2 2 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? 
metalc ? metalc2 C O22 PD2 . A PD2 2 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? 
metalc ? metalc3 A OD2 ASP 72 A ASP 120 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? 
metalc ? metalc4 A SG CYS 166 A CYS 221 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc5 A NE2 HIS 204 A HIS 263 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2GKL 
_atom_sites.fract_transf_matrix[1][1]    0.023453 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00988 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008538 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 401 401 ZN ZN . 
C 3 PD2 A 1 2 2 PD2 PD2 . 
D 4 GOL A 1 3 3 GOL GOL . 
E 4 GOL A 1 4 4 GOL GOL . 
F 4 GOL A 1 5 5 GOL GOL . 
G 5 HOH A 1 402 8 HOH HOH . 
G 5 HOH A 2 403 9 HOH HOH . 
G 5 HOH A 3 404 10 HOH HOH . 
G 5 HOH A 4 405 11 HOH HOH . 
G 5 HOH A 5 406 12 HOH HOH . 
G 5 HOH A 6 407 13 HOH HOH . 
G 5 HOH A 7 408 14 HOH HOH . 
G 5 HOH A 8 409 15 HOH HOH . 
G 5 HOH A 9 410 16 HOH HOH . 
G 5 HOH A 10 411 17 HOH HOH . 
G 5 HOH A 11 412 18 HOH HOH . 
G 5 HOH A 12 413 19 HOH HOH . 
G 5 HOH A 13 414 20 HOH HOH . 
G 5 HOH A 14 415 21 HOH HOH . 
G 5 HOH A 15 416 22 HOH HOH . 
G 5 HOH A 16 417 23 HOH HOH . 
G 5 HOH A 17 418 24 HOH HOH . 
G 5 HOH A 18 419 25 HOH HOH . 
G 5 HOH A 19 420 26 HOH HOH . 
G 5 HOH A 20 421 27 HOH HOH . 
G 5 HOH A 21 422 28 HOH HOH . 
G 5 HOH A 22 423 29 HOH HOH . 
G 5 HOH A 23 424 30 HOH HOH . 
G 5 HOH A 24 425 31 HOH HOH . 
G 5 HOH A 25 426 32 HOH HOH . 
G 5 HOH A 26 427 33 HOH HOH . 
G 5 HOH A 27 428 34 HOH HOH . 
G 5 HOH A 28 429 35 HOH HOH . 
G 5 HOH A 29 430 36 HOH HOH . 
G 5 HOH A 30 431 37 HOH HOH . 
G 5 HOH A 31 432 38 HOH HOH . 
G 5 HOH A 32 433 39 HOH HOH . 
G 5 HOH A 33 434 40 HOH HOH . 
G 5 HOH A 34 435 41 HOH HOH . 
G 5 HOH A 35 436 42 HOH HOH . 
G 5 HOH A 36 437 43 HOH HOH . 
G 5 HOH A 37 438 44 HOH HOH . 
G 5 HOH A 38 439 45 HOH HOH . 
G 5 HOH A 39 440 46 HOH HOH . 
G 5 HOH A 40 441 47 HOH HOH . 
G 5 HOH A 41 442 48 HOH HOH . 
G 5 HOH A 42 443 49 HOH HOH . 
G 5 HOH A 43 444 50 HOH HOH . 
G 5 HOH A 44 445 51 HOH HOH . 
G 5 HOH A 45 446 52 HOH HOH . 
G 5 HOH A 46 447 53 HOH HOH . 
G 5 HOH A 47 448 54 HOH HOH . 
G 5 HOH A 48 449 55 HOH HOH . 
G 5 HOH A 49 450 56 HOH HOH . 
G 5 HOH A 50 451 57 HOH HOH . 
G 5 HOH A 51 452 58 HOH HOH . 
G 5 HOH A 52 453 59 HOH HOH . 
G 5 HOH A 53 454 60 HOH HOH . 
G 5 HOH A 54 455 61 HOH HOH . 
G 5 HOH A 55 456 62 HOH HOH . 
G 5 HOH A 56 457 63 HOH HOH . 
G 5 HOH A 57 458 64 HOH HOH . 
G 5 HOH A 58 459 65 HOH HOH . 
G 5 HOH A 59 460 66 HOH HOH . 
G 5 HOH A 60 461 67 HOH HOH . 
G 5 HOH A 61 462 68 HOH HOH . 
G 5 HOH A 62 463 69 HOH HOH . 
G 5 HOH A 63 464 70 HOH HOH . 
G 5 HOH A 64 465 71 HOH HOH . 
G 5 HOH A 65 466 72 HOH HOH . 
G 5 HOH A 66 467 73 HOH HOH . 
G 5 HOH A 67 468 74 HOH HOH . 
G 5 HOH A 68 469 75 HOH HOH . 
G 5 HOH A 69 470 76 HOH HOH . 
G 5 HOH A 70 471 77 HOH HOH . 
G 5 HOH A 71 472 78 HOH HOH . 
G 5 HOH A 72 473 79 HOH HOH . 
G 5 HOH A 73 474 80 HOH HOH . 
G 5 HOH A 74 475 81 HOH HOH . 
G 5 HOH A 75 476 82 HOH HOH . 
G 5 HOH A 76 477 83 HOH HOH . 
G 5 HOH A 77 478 84 HOH HOH . 
G 5 HOH A 78 479 85 HOH HOH . 
G 5 HOH A 79 480 86 HOH HOH . 
G 5 HOH A 80 481 87 HOH HOH . 
G 5 HOH A 81 482 88 HOH HOH . 
G 5 HOH A 82 483 89 HOH HOH . 
G 5 HOH A 83 484 90 HOH HOH . 
G 5 HOH A 84 485 91 HOH HOH . 
G 5 HOH A 85 486 92 HOH HOH . 
G 5 HOH A 86 487 93 HOH HOH . 
G 5 HOH A 87 488 94 HOH HOH . 
G 5 HOH A 88 489 95 HOH HOH . 
G 5 HOH A 89 490 96 HOH HOH . 
G 5 HOH A 90 491 97 HOH HOH . 
G 5 HOH A 91 492 98 HOH HOH . 
G 5 HOH A 92 493 99 HOH HOH . 
G 5 HOH A 93 494 100 HOH HOH . 
G 5 HOH A 94 495 101 HOH HOH . 
G 5 HOH A 95 496 102 HOH HOH . 
G 5 HOH A 96 497 103 HOH HOH . 
G 5 HOH A 97 498 104 HOH HOH . 
G 5 HOH A 98 499 105 HOH HOH . 
G 5 HOH A 99 500 106 HOH HOH . 
G 5 HOH A 100 501 107 HOH HOH . 
G 5 HOH A 101 502 108 HOH HOH . 
G 5 HOH A 102 503 109 HOH HOH . 
G 5 HOH A 103 504 110 HOH HOH . 
G 5 HOH A 104 505 111 HOH HOH . 
G 5 HOH A 105 506 112 HOH HOH . 
G 5 HOH A 106 507 113 HOH HOH . 
G 5 HOH A 107 508 114 HOH HOH . 
G 5 HOH A 108 509 115 HOH HOH . 
G 5 HOH A 109 510 116 HOH HOH . 
G 5 HOH A 110 511 117 HOH HOH . 
G 5 HOH A 111 512 118 HOH HOH . 
G 5 HOH A 112 513 119 HOH HOH . 
G 5 HOH A 113 514 120 HOH HOH . 
G 5 HOH A 114 515 121 HOH HOH . 
G 5 HOH A 115 516 122 HOH HOH . 
G 5 HOH A 116 517 123 HOH HOH . 
G 5 HOH A 117 518 124 HOH HOH . 
G 5 HOH A 118 519 125 HOH HOH . 
G 5 HOH A 119 520 126 HOH HOH . 
G 5 HOH A 120 521 127 HOH HOH . 
G 5 HOH A 121 522 128 HOH HOH . 
G 5 HOH A 122 523 129 HOH HOH . 
G 5 HOH A 123 524 130 HOH HOH . 
G 5 HOH A 124 525 131 HOH HOH . 
G 5 HOH A 125 526 132 HOH HOH . 
G 5 HOH A 126 527 133 HOH HOH . 
G 5 HOH A 127 528 134 HOH HOH . 
G 5 HOH A 128 529 135 HOH HOH . 
G 5 HOH A 129 530 136 HOH HOH . 
G 5 HOH A 130 531 137 HOH HOH . 
G 5 HOH A 131 532 138 HOH HOH . 
G 5 HOH A 132 533 139 HOH HOH . 
G 5 HOH A 133 534 140 HOH HOH . 
G 5 HOH A 134 535 141 HOH HOH . 
G 5 HOH A 135 536 142 HOH HOH . 
G 5 HOH A 136 537 143 HOH HOH . 
G 5 HOH A 137 538 144 HOH HOH . 
G 5 HOH A 138 539 145 HOH HOH . 
G 5 HOH A 139 540 146 HOH HOH . 
G 5 HOH A 140 541 147 HOH HOH . 
G 5 HOH A 141 542 148 HOH HOH . 
G 5 HOH A 142 543 149 HOH HOH . 
G 5 HOH A 143 544 150 HOH HOH . 
G 5 HOH A 144 545 151 HOH HOH . 
G 5 HOH A 145 546 152 HOH HOH . 
G 5 HOH A 146 547 153 HOH HOH . 
G 5 HOH A 147 548 154 HOH HOH . 
G 5 HOH A 148 549 155 HOH HOH . 
G 5 HOH A 149 550 156 HOH HOH . 
G 5 HOH A 150 551 157 HOH HOH . 
G 5 HOH A 151 552 158 HOH HOH . 
G 5 HOH A 152 553 159 HOH HOH . 
G 5 HOH A 153 554 160 HOH HOH . 
G 5 HOH A 154 555 161 HOH HOH . 
G 5 HOH A 155 556 162 HOH HOH . 
G 5 HOH A 156 557 163 HOH HOH . 
G 5 HOH A 157 558 164 HOH HOH . 
G 5 HOH A 158 559 165 HOH HOH . 
G 5 HOH A 159 560 166 HOH HOH . 
G 5 HOH A 160 561 167 HOH HOH . 
G 5 HOH A 161 562 168 HOH HOH . 
G 5 HOH A 162 563 169 HOH HOH . 
G 5 HOH A 163 564 170 HOH HOH . 
G 5 HOH A 164 565 171 HOH HOH . 
G 5 HOH A 165 566 172 HOH HOH . 
G 5 HOH A 166 567 173 HOH HOH . 
G 5 HOH A 167 568 174 HOH HOH . 
G 5 HOH A 168 569 175 HOH HOH . 
G 5 HOH A 169 570 176 HOH HOH . 
G 5 HOH A 170 571 177 HOH HOH . 
G 5 HOH A 171 572 178 HOH HOH . 
G 5 HOH A 172 573 179 HOH HOH . 
G 5 HOH A 173 574 180 HOH HOH . 
G 5 HOH A 174 575 181 HOH HOH . 
G 5 HOH A 175 576 182 HOH HOH . 
G 5 HOH A 176 577 184 HOH HOH . 
G 5 HOH A 177 578 186 HOH HOH . 
G 5 HOH A 178 579 187 HOH HOH . 
G 5 HOH A 179 580 188 HOH HOH . 
G 5 HOH A 180 581 191 HOH HOH . 
G 5 HOH A 181 582 192 HOH HOH . 
G 5 HOH A 182 583 193 HOH HOH . 
G 5 HOH A 183 584 194 HOH HOH . 
G 5 HOH A 184 585 195 HOH HOH . 
G 5 HOH A 185 586 196 HOH HOH . 
G 5 HOH A 186 587 197 HOH HOH . 
G 5 HOH A 187 588 198 HOH HOH . 
G 5 HOH A 188 589 199 HOH HOH . 
G 5 HOH A 189 590 200 HOH HOH . 
G 5 HOH A 190 591 201 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               17.182 
_atom_site.Cartn_y               43.62 
_atom_site.Cartn_z               70.024 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        19.77 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           401 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#