data_2GKN # _model_server_result.job_id 23PR2XCziTw9kQIa-kIXnw _model_server_result.datetime_utc '2024-11-23 21:59:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2gkn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":137}' # _entry.id 2GKN # _exptl.entry_id 2GKN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2GKN _cell.length_a 45.034 _cell.length_b 62.388 _cell.length_c 90.974 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2GKN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 81 A HIS 81 1_555 D FE HEM . A HEM 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc2 D FE HEM . A HEM 144 1_555 C C CYN . A CYN 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc3 B NE2 HIS 81 B HIS 81 1_555 G FE HEM . B HEM 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc4 B O GLY 83 B GLY 83 1_555 E NA NA . B NA 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? metalc ? metalc5 G FE HEM . B HEM 144 1_555 F C CYN . B CYN 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc6 G FE HEM . B HEM 144 1_555 F N CYN . B CYN 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.023 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2GKN _atom_sites.fract_transf_matrix[1][1] 0.022205 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016029 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010992 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CYN A 1 145 145 CYN CN . D 3 HEM A 1 144 144 HEM HEM . E 4 NA B 1 137 1 NA NA . F 2 CYN B 1 145 145 CYN CN . G 3 HEM B 1 144 144 HEM HEM . H 5 HOH A 1 146 2 HOH HOH . H 5 HOH A 2 147 3 HOH HOH . H 5 HOH A 3 148 4 HOH HOH . H 5 HOH A 4 149 5 HOH HOH . H 5 HOH A 5 150 9 HOH HOH . H 5 HOH A 6 151 11 HOH HOH . H 5 HOH A 7 152 12 HOH HOH . H 5 HOH A 8 153 13 HOH HOH . H 5 HOH A 9 154 14 HOH HOH . H 5 HOH A 10 155 15 HOH HOH . H 5 HOH A 11 156 16 HOH HOH . H 5 HOH A 12 157 17 HOH HOH . H 5 HOH A 13 158 18 HOH HOH . H 5 HOH A 14 159 19 HOH HOH . H 5 HOH A 15 160 20 HOH HOH . H 5 HOH A 16 161 23 HOH HOH . H 5 HOH A 17 162 24 HOH HOH . H 5 HOH A 18 163 26 HOH HOH . H 5 HOH A 19 164 31 HOH HOH . H 5 HOH A 20 165 32 HOH HOH . H 5 HOH A 21 166 35 HOH HOH . H 5 HOH A 22 167 36 HOH HOH . H 5 HOH A 23 168 40 HOH HOH . H 5 HOH A 24 169 43 HOH HOH . H 5 HOH A 25 170 46 HOH HOH . H 5 HOH A 26 171 47 HOH HOH . H 5 HOH A 27 172 48 HOH HOH . H 5 HOH A 28 173 49 HOH HOH . I 5 HOH B 1 146 6 HOH HOH . I 5 HOH B 2 147 7 HOH HOH . I 5 HOH B 3 148 8 HOH HOH . I 5 HOH B 4 149 10 HOH HOH . I 5 HOH B 5 150 21 HOH HOH . I 5 HOH B 6 151 22 HOH HOH . I 5 HOH B 7 152 25 HOH HOH . I 5 HOH B 8 153 27 HOH HOH . I 5 HOH B 9 154 28 HOH HOH . I 5 HOH B 10 155 29 HOH HOH . I 5 HOH B 11 156 30 HOH HOH . I 5 HOH B 12 157 33 HOH HOH . I 5 HOH B 13 158 34 HOH HOH . I 5 HOH B 14 159 37 HOH HOH . I 5 HOH B 15 160 38 HOH HOH . I 5 HOH B 16 161 39 HOH HOH . I 5 HOH B 17 162 41 HOH HOH . I 5 HOH B 18 163 42 HOH HOH . I 5 HOH B 19 164 44 HOH HOH . I 5 HOH B 20 165 45 HOH HOH . I 5 HOH B 21 166 50 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x -21.048 _atom_site.Cartn_y -6.647 _atom_site.Cartn_z -24.369 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 12.46 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 137 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 224 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #