data_2GMM # _model_server_result.job_id Ge364MmQ0Y-m30o5_kSp1A _model_server_result.datetime_utc '2024-12-26 10:50:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2gmm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":305}' # _entry.id 2GMM # _exptl.entry_id 2GMM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2GMM _cell.length_a 58.706 _cell.length_b 62.587 _cell.length_c 129.959 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2GMM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 MAN _pdbx_entity_branch_link.comp_id_2 MAN _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C MAN 1 C 1 MAN S 2 MAN 2 n C MAN 2 C 2 MAN S 1 MAN 2 n D MAN 1 D 1 MAN S 102 MAN 2 n D MAN 2 D 2 MAN S 101 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PCA 1 A PCA 1 1_555 A N ASP 2 A ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 B C PCA 1 B PCA 1 1_555 B N ASP 2 B ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 C O2 MAN . C MAN 1 1_555 C C1 MAN . C MAN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.404 ? covale ? covale4 D O2 MAN . D MAN 1 1_555 D C1 MAN . D MAN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.404 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 317 n n S O2 SO4 doub 318 n n S O3 SO4 sing 319 n n S O4 SO4 sing 320 n n # _atom_sites.entry_id 2GMM _atom_sites.fract_transf_matrix[1][1] 0.017034 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015978 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007695 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 SO4 A 1 305 5 SO4 SO4 . F 3 SO4 B 1 306 6 SO4 SO4 . G 4 HOH A 1 306 1 HOH HOH . G 4 HOH A 2 307 2 HOH HOH . G 4 HOH A 3 308 4 HOH HOH . G 4 HOH A 4 309 5 HOH HOH . G 4 HOH A 5 310 6 HOH HOH . G 4 HOH A 6 311 7 HOH HOH . G 4 HOH A 7 312 8 HOH HOH . G 4 HOH A 8 313 9 HOH HOH . G 4 HOH A 9 314 10 HOH HOH . G 4 HOH A 10 315 11 HOH HOH . G 4 HOH A 11 316 12 HOH HOH . G 4 HOH A 12 317 13 HOH HOH . G 4 HOH A 13 318 16 HOH HOH . G 4 HOH A 14 319 17 HOH HOH . G 4 HOH A 15 320 18 HOH HOH . G 4 HOH A 16 321 19 HOH HOH . G 4 HOH A 17 322 20 HOH HOH . G 4 HOH A 18 323 21 HOH HOH . G 4 HOH A 19 324 23 HOH HOH . G 4 HOH A 20 325 25 HOH HOH . G 4 HOH A 21 326 26 HOH HOH . G 4 HOH A 22 327 27 HOH HOH . G 4 HOH A 23 328 28 HOH HOH . G 4 HOH A 24 329 29 HOH HOH . G 4 HOH A 25 330 30 HOH HOH . G 4 HOH A 26 331 31 HOH HOH . G 4 HOH A 27 332 32 HOH HOH . G 4 HOH A 28 333 33 HOH HOH . G 4 HOH A 29 334 34 HOH HOH . G 4 HOH A 30 335 35 HOH HOH . G 4 HOH A 31 336 36 HOH HOH . G 4 HOH A 32 337 37 HOH HOH . G 4 HOH A 33 338 38 HOH HOH . G 4 HOH A 34 339 39 HOH HOH . G 4 HOH A 35 340 40 HOH HOH . G 4 HOH A 36 341 41 HOH HOH . G 4 HOH A 37 342 42 HOH HOH . G 4 HOH A 38 343 43 HOH HOH . G 4 HOH A 39 344 44 HOH HOH . G 4 HOH A 40 345 45 HOH HOH . G 4 HOH A 41 346 46 HOH HOH . G 4 HOH A 42 347 47 HOH HOH . G 4 HOH A 43 348 48 HOH HOH . G 4 HOH A 44 349 49 HOH HOH . G 4 HOH A 45 350 50 HOH HOH . G 4 HOH A 46 351 52 HOH HOH . G 4 HOH A 47 352 53 HOH HOH . G 4 HOH A 48 353 54 HOH HOH . G 4 HOH A 49 354 55 HOH HOH . G 4 HOH A 50 355 59 HOH HOH . G 4 HOH A 51 356 60 HOH HOH . G 4 HOH A 52 357 61 HOH HOH . G 4 HOH A 53 358 62 HOH HOH . G 4 HOH A 54 359 63 HOH HOH . G 4 HOH A 55 360 64 HOH HOH . G 4 HOH A 56 361 65 HOH HOH . G 4 HOH A 57 362 66 HOH HOH . G 4 HOH A 58 363 67 HOH HOH . G 4 HOH A 59 364 68 HOH HOH . G 4 HOH A 60 365 69 HOH HOH . G 4 HOH A 61 366 70 HOH HOH . G 4 HOH A 62 367 71 HOH HOH . G 4 HOH A 63 368 72 HOH HOH . G 4 HOH A 64 369 73 HOH HOH . G 4 HOH A 65 370 74 HOH HOH . G 4 HOH A 66 371 75 HOH HOH . G 4 HOH A 67 372 76 HOH HOH . G 4 HOH A 68 373 77 HOH HOH . G 4 HOH A 69 374 78 HOH HOH . G 4 HOH A 70 375 79 HOH HOH . G 4 HOH A 71 376 80 HOH HOH . G 4 HOH A 72 377 81 HOH HOH . G 4 HOH A 73 378 82 HOH HOH . G 4 HOH A 74 379 84 HOH HOH . G 4 HOH A 75 380 85 HOH HOH . G 4 HOH A 76 381 86 HOH HOH . G 4 HOH A 77 382 87 HOH HOH . G 4 HOH A 78 383 88 HOH HOH . G 4 HOH A 79 384 89 HOH HOH . G 4 HOH A 80 385 90 HOH HOH . G 4 HOH A 81 386 91 HOH HOH . G 4 HOH A 82 387 92 HOH HOH . G 4 HOH A 83 388 93 HOH HOH . G 4 HOH A 84 389 94 HOH HOH . G 4 HOH A 85 390 95 HOH HOH . G 4 HOH A 86 391 97 HOH HOH . G 4 HOH A 87 392 98 HOH HOH . G 4 HOH A 88 393 99 HOH HOH . G 4 HOH A 89 394 100 HOH HOH . G 4 HOH A 90 395 101 HOH HOH . G 4 HOH A 91 396 102 HOH HOH . G 4 HOH A 92 397 103 HOH HOH . G 4 HOH A 93 398 104 HOH HOH . G 4 HOH A 94 399 105 HOH HOH . G 4 HOH A 95 400 106 HOH HOH . G 4 HOH A 96 401 107 HOH HOH . G 4 HOH A 97 402 109 HOH HOH . G 4 HOH A 98 403 124 HOH HOH . G 4 HOH A 99 404 178 HOH HOH . G 4 HOH A 100 405 179 HOH HOH . G 4 HOH A 101 406 181 HOH HOH . G 4 HOH A 102 407 182 HOH HOH . G 4 HOH A 103 408 183 HOH HOH . G 4 HOH A 104 409 184 HOH HOH . G 4 HOH A 105 410 185 HOH HOH . G 4 HOH A 106 411 186 HOH HOH . G 4 HOH A 107 412 187 HOH HOH . G 4 HOH A 108 413 188 HOH HOH . G 4 HOH A 109 414 189 HOH HOH . G 4 HOH A 110 415 190 HOH HOH . G 4 HOH A 111 416 192 HOH HOH . G 4 HOH A 112 417 194 HOH HOH . G 4 HOH A 113 418 195 HOH HOH . G 4 HOH A 114 419 196 HOH HOH . G 4 HOH A 115 420 197 HOH HOH . G 4 HOH A 116 421 198 HOH HOH . G 4 HOH A 117 422 199 HOH HOH . G 4 HOH A 118 423 200 HOH HOH . G 4 HOH A 119 424 201 HOH HOH . G 4 HOH A 120 425 202 HOH HOH . G 4 HOH A 121 426 203 HOH HOH . G 4 HOH A 122 427 204 HOH HOH . G 4 HOH A 123 428 205 HOH HOH . G 4 HOH A 124 429 206 HOH HOH . G 4 HOH A 125 430 207 HOH HOH . G 4 HOH A 126 431 208 HOH HOH . G 4 HOH A 127 432 209 HOH HOH . G 4 HOH A 128 433 210 HOH HOH . H 4 HOH B 1 307 3 HOH HOH . H 4 HOH B 2 308 14 HOH HOH . H 4 HOH B 3 309 15 HOH HOH . H 4 HOH B 4 310 22 HOH HOH . H 4 HOH B 5 311 24 HOH HOH . H 4 HOH B 6 312 51 HOH HOH . H 4 HOH B 7 313 56 HOH HOH . H 4 HOH B 8 314 57 HOH HOH . H 4 HOH B 9 315 58 HOH HOH . H 4 HOH B 10 316 83 HOH HOH . H 4 HOH B 11 317 96 HOH HOH . H 4 HOH B 12 318 108 HOH HOH . H 4 HOH B 13 319 110 HOH HOH . H 4 HOH B 14 320 111 HOH HOH . H 4 HOH B 15 321 112 HOH HOH . H 4 HOH B 16 322 113 HOH HOH . H 4 HOH B 17 323 114 HOH HOH . H 4 HOH B 18 324 115 HOH HOH . H 4 HOH B 19 325 116 HOH HOH . H 4 HOH B 20 326 117 HOH HOH . H 4 HOH B 21 327 118 HOH HOH . H 4 HOH B 22 328 119 HOH HOH . H 4 HOH B 23 329 120 HOH HOH . H 4 HOH B 24 330 121 HOH HOH . H 4 HOH B 25 331 122 HOH HOH . H 4 HOH B 26 332 123 HOH HOH . H 4 HOH B 27 333 125 HOH HOH . H 4 HOH B 28 334 126 HOH HOH . H 4 HOH B 29 335 127 HOH HOH . H 4 HOH B 30 336 128 HOH HOH . H 4 HOH B 31 337 129 HOH HOH . H 4 HOH B 32 338 130 HOH HOH . H 4 HOH B 33 339 131 HOH HOH . H 4 HOH B 34 340 132 HOH HOH . H 4 HOH B 35 341 133 HOH HOH . H 4 HOH B 36 342 134 HOH HOH . H 4 HOH B 37 343 135 HOH HOH . H 4 HOH B 38 344 136 HOH HOH . H 4 HOH B 39 345 137 HOH HOH . H 4 HOH B 40 346 138 HOH HOH . H 4 HOH B 41 347 139 HOH HOH . H 4 HOH B 42 348 140 HOH HOH . H 4 HOH B 43 349 141 HOH HOH . H 4 HOH B 44 350 142 HOH HOH . H 4 HOH B 45 351 143 HOH HOH . H 4 HOH B 46 352 144 HOH HOH . H 4 HOH B 47 353 145 HOH HOH . H 4 HOH B 48 354 146 HOH HOH . H 4 HOH B 49 355 147 HOH HOH . H 4 HOH B 50 356 148 HOH HOH . H 4 HOH B 51 357 149 HOH HOH . H 4 HOH B 52 358 150 HOH HOH . H 4 HOH B 53 359 151 HOH HOH . H 4 HOH B 54 360 152 HOH HOH . H 4 HOH B 55 361 153 HOH HOH . H 4 HOH B 56 362 154 HOH HOH . H 4 HOH B 57 363 155 HOH HOH . H 4 HOH B 58 364 156 HOH HOH . H 4 HOH B 59 365 157 HOH HOH . H 4 HOH B 60 366 158 HOH HOH . H 4 HOH B 61 367 159 HOH HOH . H 4 HOH B 62 368 160 HOH HOH . H 4 HOH B 63 369 161 HOH HOH . H 4 HOH B 64 370 162 HOH HOH . H 4 HOH B 65 371 163 HOH HOH . H 4 HOH B 66 372 164 HOH HOH . H 4 HOH B 67 373 165 HOH HOH . H 4 HOH B 68 374 166 HOH HOH . H 4 HOH B 69 375 167 HOH HOH . H 4 HOH B 70 376 168 HOH HOH . H 4 HOH B 71 377 169 HOH HOH . H 4 HOH B 72 378 170 HOH HOH . H 4 HOH B 73 379 171 HOH HOH . H 4 HOH B 74 380 172 HOH HOH . H 4 HOH B 75 381 173 HOH HOH . H 4 HOH B 76 382 174 HOH HOH . H 4 HOH B 77 383 175 HOH HOH . H 4 HOH B 78 384 176 HOH HOH . H 4 HOH B 79 385 177 HOH HOH . H 4 HOH B 80 386 180 HOH HOH . H 4 HOH B 81 387 191 HOH HOH . H 4 HOH B 82 388 193 HOH HOH . H 4 HOH B 83 389 211 HOH HOH . H 4 HOH B 84 390 212 HOH HOH . H 4 HOH B 85 391 213 HOH HOH . H 4 HOH B 86 392 214 HOH HOH . H 4 HOH B 87 393 215 HOH HOH . H 4 HOH B 88 394 216 HOH HOH . H 4 HOH B 89 395 217 HOH HOH . H 4 HOH B 90 396 218 HOH HOH . H 4 HOH B 91 397 219 HOH HOH . H 4 HOH B 92 398 220 HOH HOH . H 4 HOH B 93 399 221 HOH HOH . H 4 HOH B 94 400 222 HOH HOH . H 4 HOH B 95 401 223 HOH HOH . H 4 HOH B 96 402 224 HOH HOH . H 4 HOH B 97 403 225 HOH HOH . H 4 HOH B 98 404 226 HOH HOH . H 4 HOH B 99 405 227 HOH HOH . H 4 HOH B 100 406 228 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . E 3 16.301 -11.585 -8.519 0.5 60.62 ? S SO4 305 A 1 HETATM 2 O O1 SO4 . . . E 3 16.842 -11.561 -7.149 0.5 58.21 ? O1 SO4 305 A 1 HETATM 3 O O2 SO4 . . . E 3 15.911 -10.219 -8.916 0.5 56.96 ? O2 SO4 305 A 1 HETATM 4 O O3 SO4 . . . E 3 15.12 -12.467 -8.566 0.5 58.62 ? O3 SO4 305 A 1 HETATM 5 O O4 SO4 . . . E 3 17.329 -12.093 -9.445 0.5 58.43 ? O4 SO4 305 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #