data_2GMP # _model_server_result.job_id 7PTnlfOliq2uqs_i0sMwLw _model_server_result.datetime_utc '2024-10-13 02:28:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2gmp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":255}' # _entry.id 2GMP # _exptl.entry_id 2GMP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2GMP _cell.length_a 58.112 _cell.length_b 61 _cell.length_c 128.519 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2GMP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 MAN _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C MAN 1 C 1 MAN S 2 MAN 2 n C NAG 2 C 2 NAG S 1 NAG 2 n D MAN 1 D 1 MAN S 102 MAN 2 n D NAG 2 D 2 NAG S 101 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PCA 1 A PCA 1 1_555 A N ASP 2 A ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 B C PCA 1 B PCA 1 1_555 B N ASP 2 B ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale3 C O2 MAN . C MAN 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.815 ? covale ? covale4 D O2 MAN . D MAN 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.717 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2GMP _atom_sites.fract_transf_matrix[1][1] 0.017208 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016393 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007781 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 SO4 A 1 255 5 SO4 SO4 . F 4 HOH A 1 256 1 HOH HOH . F 4 HOH A 2 257 2 HOH HOH . F 4 HOH A 3 258 3 HOH HOH . F 4 HOH A 4 259 4 HOH HOH . F 4 HOH A 5 260 5 HOH HOH . F 4 HOH A 6 261 6 HOH HOH . F 4 HOH A 7 262 7 HOH HOH . F 4 HOH A 8 263 8 HOH HOH . F 4 HOH A 9 264 9 HOH HOH . F 4 HOH A 10 265 10 HOH HOH . F 4 HOH A 11 266 11 HOH HOH . F 4 HOH A 12 267 14 HOH HOH . F 4 HOH A 13 268 16 HOH HOH . F 4 HOH A 14 269 19 HOH HOH . F 4 HOH A 15 270 20 HOH HOH . F 4 HOH A 16 271 21 HOH HOH . F 4 HOH A 17 272 22 HOH HOH . F 4 HOH A 18 273 23 HOH HOH . F 4 HOH A 19 274 24 HOH HOH . F 4 HOH A 20 275 25 HOH HOH . F 4 HOH A 21 276 26 HOH HOH . F 4 HOH A 22 277 27 HOH HOH . F 4 HOH A 23 278 30 HOH HOH . F 4 HOH A 24 279 31 HOH HOH . F 4 HOH A 25 280 32 HOH HOH . F 4 HOH A 26 281 33 HOH HOH . F 4 HOH A 27 282 34 HOH HOH . F 4 HOH A 28 283 35 HOH HOH . F 4 HOH A 29 284 36 HOH HOH . F 4 HOH A 30 285 37 HOH HOH . F 4 HOH A 31 286 38 HOH HOH . F 4 HOH A 32 287 39 HOH HOH . F 4 HOH A 33 288 40 HOH HOH . F 4 HOH A 34 289 41 HOH HOH . F 4 HOH A 35 290 42 HOH HOH . F 4 HOH A 36 291 43 HOH HOH . F 4 HOH A 37 292 44 HOH HOH . F 4 HOH A 38 293 45 HOH HOH . F 4 HOH A 39 294 46 HOH HOH . F 4 HOH A 40 295 47 HOH HOH . F 4 HOH A 41 296 48 HOH HOH . F 4 HOH A 42 297 49 HOH HOH . F 4 HOH A 43 298 50 HOH HOH . F 4 HOH A 44 299 54 HOH HOH . F 4 HOH A 45 300 56 HOH HOH . F 4 HOH A 46 301 58 HOH HOH . F 4 HOH A 47 302 59 HOH HOH . F 4 HOH A 48 303 60 HOH HOH . F 4 HOH A 49 304 61 HOH HOH . F 4 HOH A 50 305 62 HOH HOH . F 4 HOH A 51 306 63 HOH HOH . F 4 HOH A 52 307 64 HOH HOH . F 4 HOH A 53 308 66 HOH HOH . F 4 HOH A 54 309 67 HOH HOH . F 4 HOH A 55 310 69 HOH HOH . F 4 HOH A 56 311 70 HOH HOH . F 4 HOH A 57 312 71 HOH HOH . F 4 HOH A 58 313 72 HOH HOH . F 4 HOH A 59 314 73 HOH HOH . F 4 HOH A 60 315 74 HOH HOH . F 4 HOH A 61 316 75 HOH HOH . F 4 HOH A 62 317 76 HOH HOH . F 4 HOH A 63 318 77 HOH HOH . F 4 HOH A 64 319 78 HOH HOH . F 4 HOH A 65 320 79 HOH HOH . F 4 HOH A 66 321 80 HOH HOH . F 4 HOH A 67 322 81 HOH HOH . F 4 HOH A 68 323 82 HOH HOH . F 4 HOH A 69 324 83 HOH HOH . F 4 HOH A 70 325 84 HOH HOH . F 4 HOH A 71 326 85 HOH HOH . F 4 HOH A 72 327 86 HOH HOH . F 4 HOH A 73 328 87 HOH HOH . F 4 HOH A 74 329 88 HOH HOH . F 4 HOH A 75 330 89 HOH HOH . F 4 HOH A 76 331 90 HOH HOH . F 4 HOH A 77 332 92 HOH HOH . F 4 HOH A 78 333 93 HOH HOH . F 4 HOH A 79 334 94 HOH HOH . F 4 HOH A 80 335 96 HOH HOH . F 4 HOH A 81 336 97 HOH HOH . F 4 HOH A 82 337 98 HOH HOH . F 4 HOH A 83 338 99 HOH HOH . F 4 HOH A 84 339 100 HOH HOH . F 4 HOH A 85 340 102 HOH HOH . F 4 HOH A 86 341 103 HOH HOH . F 4 HOH A 87 342 127 HOH HOH . F 4 HOH A 88 343 165 HOH HOH . F 4 HOH A 89 344 166 HOH HOH . F 4 HOH A 90 345 167 HOH HOH . G 4 HOH B 1 255 12 HOH HOH . G 4 HOH B 2 256 13 HOH HOH . G 4 HOH B 3 257 15 HOH HOH . G 4 HOH B 4 258 17 HOH HOH . G 4 HOH B 5 259 18 HOH HOH . G 4 HOH B 6 260 28 HOH HOH . G 4 HOH B 7 261 29 HOH HOH . G 4 HOH B 8 262 51 HOH HOH . G 4 HOH B 9 263 52 HOH HOH . G 4 HOH B 10 264 53 HOH HOH . G 4 HOH B 11 265 55 HOH HOH . G 4 HOH B 12 266 57 HOH HOH . G 4 HOH B 13 267 65 HOH HOH . G 4 HOH B 14 268 68 HOH HOH . G 4 HOH B 15 269 91 HOH HOH . G 4 HOH B 16 270 95 HOH HOH . G 4 HOH B 17 271 101 HOH HOH . G 4 HOH B 18 272 104 HOH HOH . G 4 HOH B 19 273 105 HOH HOH . G 4 HOH B 20 274 106 HOH HOH . G 4 HOH B 21 275 107 HOH HOH . G 4 HOH B 22 276 108 HOH HOH . G 4 HOH B 23 277 109 HOH HOH . G 4 HOH B 24 278 110 HOH HOH . G 4 HOH B 25 279 111 HOH HOH . G 4 HOH B 26 280 112 HOH HOH . G 4 HOH B 27 281 113 HOH HOH . G 4 HOH B 28 282 114 HOH HOH . G 4 HOH B 29 283 115 HOH HOH . G 4 HOH B 30 284 116 HOH HOH . G 4 HOH B 31 285 117 HOH HOH . G 4 HOH B 32 286 118 HOH HOH . G 4 HOH B 33 287 119 HOH HOH . G 4 HOH B 34 288 120 HOH HOH . G 4 HOH B 35 289 121 HOH HOH . G 4 HOH B 36 290 122 HOH HOH . G 4 HOH B 37 291 123 HOH HOH . G 4 HOH B 38 292 124 HOH HOH . G 4 HOH B 39 293 125 HOH HOH . G 4 HOH B 40 294 126 HOH HOH . G 4 HOH B 41 295 128 HOH HOH . G 4 HOH B 42 296 129 HOH HOH . G 4 HOH B 43 297 130 HOH HOH . G 4 HOH B 44 298 131 HOH HOH . G 4 HOH B 45 299 132 HOH HOH . G 4 HOH B 46 300 133 HOH HOH . G 4 HOH B 47 301 134 HOH HOH . G 4 HOH B 48 302 135 HOH HOH . G 4 HOH B 49 303 136 HOH HOH . G 4 HOH B 50 304 137 HOH HOH . G 4 HOH B 51 305 138 HOH HOH . G 4 HOH B 52 306 139 HOH HOH . G 4 HOH B 53 307 140 HOH HOH . G 4 HOH B 54 308 141 HOH HOH . G 4 HOH B 55 309 142 HOH HOH . G 4 HOH B 56 310 143 HOH HOH . G 4 HOH B 57 311 144 HOH HOH . G 4 HOH B 58 312 145 HOH HOH . G 4 HOH B 59 313 146 HOH HOH . G 4 HOH B 60 314 147 HOH HOH . G 4 HOH B 61 315 148 HOH HOH . G 4 HOH B 62 316 149 HOH HOH . G 4 HOH B 63 317 150 HOH HOH . G 4 HOH B 64 318 151 HOH HOH . G 4 HOH B 65 319 152 HOH HOH . G 4 HOH B 66 320 153 HOH HOH . G 4 HOH B 67 321 154 HOH HOH . G 4 HOH B 68 322 155 HOH HOH . G 4 HOH B 69 323 156 HOH HOH . G 4 HOH B 70 324 157 HOH HOH . G 4 HOH B 71 325 158 HOH HOH . G 4 HOH B 72 326 159 HOH HOH . G 4 HOH B 73 327 160 HOH HOH . G 4 HOH B 74 328 161 HOH HOH . G 4 HOH B 75 329 162 HOH HOH . G 4 HOH B 76 330 163 HOH HOH . G 4 HOH B 77 331 164 HOH HOH . G 4 HOH B 78 332 168 HOH HOH . G 4 HOH B 79 333 169 HOH HOH . G 4 HOH B 80 334 170 HOH HOH . G 4 HOH B 81 335 171 HOH HOH . G 4 HOH B 82 336 172 HOH HOH . G 4 HOH B 83 337 173 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . E 3 16.571 -11.634 -8.494 1 99.05 ? S SO4 255 A 1 HETATM 2 O O1 SO4 . . . E 3 16.353 -12.553 -9.633 1 98.22 ? O1 SO4 255 A 1 HETATM 3 O O2 SO4 . . . E 3 16.221 -10.255 -8.895 1 97.42 ? O2 SO4 255 A 1 HETATM 4 O O3 SO4 . . . E 3 15.722 -12.051 -7.354 1 98.5 ? O3 SO4 255 A 1 HETATM 5 O O4 SO4 . . . E 3 17.995 -11.682 -8.091 1 98.49 ? O4 SO4 255 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 5 #