data_2GMR # _model_server_result.job_id 61pAN9IMN493MBGpFcpfVw _model_server_result.datetime_utc '2024-11-07 00:39:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2gmr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":307}' # _entry.id 2GMR # _exptl.entry_id 2GMR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 229.402 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LAURYL DIMETHYLAMINE-N-OXIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2GMR _cell.length_a 76.85 _cell.length_b 134.72 _cell.length_c 141.64 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2GMR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 I N N ? 7 O N N ? 7 P N N ? 7 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 153 L HIS 153 1_555 F MG BCL . L BCL 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc2 A NE2 HIS 173 L HIS 173 1_555 E MG BCL . L BCL 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc3 A NE2 HIS 190 L HIS 190 1_555 J FE FE2 . M FE2 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc4 A NE2 HIS 230 L HIS 230 1_555 J FE FE2 . M FE2 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc5 D MG BCL . L BCL 301 1_555 B NE2 HIS 182 M HIS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc6 B NE2 HIS 202 M HIS 202 1_555 K MG BCL . M BCL 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc7 B NE2 HIS 219 M HIS 219 1_555 J FE FE2 . M FE2 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc8 B OE1 GLU 234 M GLU 234 1_555 J FE FE2 . M FE2 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc9 B OE2 GLU 234 M GLU 234 1_555 J FE FE2 . M FE2 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc10 B NE2 HIS 266 M HIS 266 1_555 J FE FE2 . M FE2 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? # _chem_comp.formula 'C14 H31 N O' _chem_comp.formula_weight 229.402 _chem_comp.id LDA _chem_comp.mon_nstd_flag . _chem_comp.name 'LAURYL DIMETHYLAMINE-N-OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 O1 LDA sing 467 n n N1 CM1 LDA sing 468 n n N1 CM2 LDA sing 469 n n N1 C1 LDA sing 470 n n CM1 HM11 LDA sing 471 n n CM1 HM12 LDA sing 472 n n CM1 HM13 LDA sing 473 n n CM2 HM21 LDA sing 474 n n CM2 HM22 LDA sing 475 n n CM2 HM23 LDA sing 476 n n C1 C2 LDA sing 477 n n C1 H11 LDA sing 478 n n C1 H12 LDA sing 479 n n C2 C3 LDA sing 480 n n C2 H21 LDA sing 481 n n C2 H22 LDA sing 482 n n C3 C4 LDA sing 483 n n C3 H31 LDA sing 484 n n C3 H32 LDA sing 485 n n C4 C5 LDA sing 486 n n C4 H41 LDA sing 487 n n C4 H42 LDA sing 488 n n C5 C6 LDA sing 489 n n C5 H51 LDA sing 490 n n C5 H52 LDA sing 491 n n C6 C7 LDA sing 492 n n C6 H61 LDA sing 493 n n C6 H62 LDA sing 494 n n C7 C8 LDA sing 495 n n C7 H71 LDA sing 496 n n C7 H72 LDA sing 497 n n C8 C9 LDA sing 498 n n C8 H81 LDA sing 499 n n C8 H82 LDA sing 500 n n C9 C10 LDA sing 501 n n C9 H91 LDA sing 502 n n C9 H92 LDA sing 503 n n C10 C11 LDA sing 504 n n C10 H101 LDA sing 505 n n C10 H102 LDA sing 506 n n C11 C12 LDA sing 507 n n C11 H111 LDA sing 508 n n C11 H112 LDA sing 509 n n C12 H121 LDA sing 510 n n C12 H122 LDA sing 511 n n C12 H123 LDA sing 512 n n # _atom_sites.entry_id 2GMR _atom_sites.fract_transf_matrix[1][1] 0.013012 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007423 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00706 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 BCL L 1 301 301 BCL BCL . E 4 BCL L 1 302 302 BCL BCL . F 4 BCL L 1 304 304 BCL BCL . G 5 BPH L 1 305 206 BPH BPH . H 6 U10 L 1 306 209 U10 U10 . I 7 LDA L 1 307 213 LDA LDA . J 8 FE2 M 1 308 207 FE2 FE2 . K 4 BCL M 1 309 303 BCL BCL . L 5 BPH M 1 310 205 BPH BPH . M 6 U10 M 1 311 208 U10 U10 . N 9 SPN M 1 312 210 SPN SPN . O 7 LDA M 1 313 211 LDA LDA . P 7 LDA M 1 314 212 LDA LDA . Q 7 LDA H 1 261 214 LDA LDA . R 10 HOH L 1 308 1 HOH HOH . R 10 HOH L 2 309 2 HOH HOH . R 10 HOH L 3 310 7 HOH HOH . R 10 HOH L 4 311 8 HOH HOH . R 10 HOH L 5 312 9 HOH HOH . R 10 HOH L 6 313 21 HOH HOH . R 10 HOH L 7 314 23 HOH HOH . R 10 HOH L 8 315 24 HOH HOH . R 10 HOH L 9 316 33 HOH HOH . R 10 HOH L 10 317 52 HOH HOH . R 10 HOH L 11 318 53 HOH HOH . R 10 HOH L 12 319 66 HOH HOH . R 10 HOH L 13 320 69 HOH HOH . R 10 HOH L 14 321 70 HOH HOH . R 10 HOH L 15 322 71 HOH HOH . R 10 HOH L 16 323 77 HOH HOH . R 10 HOH L 17 324 83 HOH HOH . R 10 HOH L 18 325 84 HOH HOH . R 10 HOH L 19 326 92 HOH HOH . R 10 HOH L 20 327 93 HOH HOH . R 10 HOH L 21 328 96 HOH HOH . R 10 HOH L 22 329 98 HOH HOH . R 10 HOH L 23 330 99 HOH HOH . R 10 HOH L 24 331 102 HOH HOH . R 10 HOH L 25 332 104 HOH HOH . R 10 HOH L 26 333 106 HOH HOH . R 10 HOH L 27 334 107 HOH HOH . R 10 HOH L 28 335 108 HOH HOH . R 10 HOH L 29 336 118 HOH HOH . R 10 HOH L 30 337 119 HOH HOH . R 10 HOH L 31 338 120 HOH HOH . R 10 HOH L 32 339 122 HOH HOH . R 10 HOH L 33 340 127 HOH HOH . R 10 HOH L 34 341 131 HOH HOH . R 10 HOH L 35 342 137 HOH HOH . R 10 HOH L 36 343 153 HOH HOH . R 10 HOH L 37 344 154 HOH HOH . R 10 HOH L 38 345 161 HOH HOH . R 10 HOH L 39 346 163 HOH HOH . R 10 HOH L 40 347 168 HOH HOH . R 10 HOH L 41 348 174 HOH HOH . R 10 HOH L 42 349 175 HOH HOH . R 10 HOH L 43 350 177 HOH HOH . R 10 HOH L 44 351 179 HOH HOH . R 10 HOH L 45 352 180 HOH HOH . S 10 HOH M 1 315 3 HOH HOH . S 10 HOH M 2 316 4 HOH HOH . S 10 HOH M 3 317 5 HOH HOH . S 10 HOH M 4 318 6 HOH HOH . S 10 HOH M 5 319 10 HOH HOH . S 10 HOH M 6 320 11 HOH HOH . S 10 HOH M 7 321 12 HOH HOH . S 10 HOH M 8 322 13 HOH HOH . S 10 HOH M 9 323 14 HOH HOH . S 10 HOH M 10 324 15 HOH HOH . S 10 HOH M 11 325 16 HOH HOH . S 10 HOH M 12 326 17 HOH HOH . S 10 HOH M 13 327 20 HOH HOH . S 10 HOH M 14 328 22 HOH HOH . S 10 HOH M 15 329 26 HOH HOH . S 10 HOH M 16 330 27 HOH HOH . S 10 HOH M 17 331 28 HOH HOH . S 10 HOH M 18 332 30 HOH HOH . S 10 HOH M 19 333 31 HOH HOH . S 10 HOH M 20 334 32 HOH HOH . S 10 HOH M 21 335 36 HOH HOH . S 10 HOH M 22 336 48 HOH HOH . S 10 HOH M 23 337 50 HOH HOH . S 10 HOH M 24 338 51 HOH HOH . S 10 HOH M 25 339 54 HOH HOH . S 10 HOH M 26 340 65 HOH HOH . S 10 HOH M 27 341 67 HOH HOH . S 10 HOH M 28 342 68 HOH HOH . S 10 HOH M 29 343 72 HOH HOH . S 10 HOH M 30 344 73 HOH HOH . S 10 HOH M 31 345 78 HOH HOH . S 10 HOH M 32 346 79 HOH HOH . S 10 HOH M 33 347 80 HOH HOH . S 10 HOH M 34 348 81 HOH HOH . S 10 HOH M 35 349 82 HOH HOH . S 10 HOH M 36 350 85 HOH HOH . S 10 HOH M 37 351 86 HOH HOH . S 10 HOH M 38 352 87 HOH HOH . S 10 HOH M 39 353 88 HOH HOH . S 10 HOH M 40 354 90 HOH HOH . S 10 HOH M 41 355 91 HOH HOH . S 10 HOH M 42 356 100 HOH HOH . S 10 HOH M 43 357 101 HOH HOH . S 10 HOH M 44 358 109 HOH HOH . S 10 HOH M 45 359 110 HOH HOH . S 10 HOH M 46 360 112 HOH HOH . S 10 HOH M 47 361 114 HOH HOH . S 10 HOH M 48 362 129 HOH HOH . S 10 HOH M 49 363 130 HOH HOH . S 10 HOH M 50 364 132 HOH HOH . S 10 HOH M 51 365 134 HOH HOH . S 10 HOH M 52 366 138 HOH HOH . S 10 HOH M 53 367 142 HOH HOH . S 10 HOH M 54 368 144 HOH HOH . S 10 HOH M 55 369 145 HOH HOH . S 10 HOH M 56 370 146 HOH HOH . S 10 HOH M 57 371 150 HOH HOH . S 10 HOH M 58 372 157 HOH HOH . S 10 HOH M 59 373 158 HOH HOH . S 10 HOH M 60 374 159 HOH HOH . S 10 HOH M 61 375 160 HOH HOH . S 10 HOH M 62 376 164 HOH HOH . S 10 HOH M 63 377 165 HOH HOH . S 10 HOH M 64 378 167 HOH HOH . S 10 HOH M 65 379 178 HOH HOH . T 10 HOH H 1 262 18 HOH HOH . T 10 HOH H 2 263 19 HOH HOH . T 10 HOH H 3 264 25 HOH HOH . T 10 HOH H 4 265 29 HOH HOH . T 10 HOH H 5 266 34 HOH HOH . T 10 HOH H 6 267 35 HOH HOH . T 10 HOH H 7 268 37 HOH HOH . T 10 HOH H 8 269 38 HOH HOH . T 10 HOH H 9 270 39 HOH HOH . T 10 HOH H 10 271 40 HOH HOH . T 10 HOH H 11 272 41 HOH HOH . T 10 HOH H 12 273 42 HOH HOH . T 10 HOH H 13 274 43 HOH HOH . T 10 HOH H 14 275 44 HOH HOH . T 10 HOH H 15 276 45 HOH HOH . T 10 HOH H 16 277 46 HOH HOH . T 10 HOH H 17 278 47 HOH HOH . T 10 HOH H 18 279 49 HOH HOH . T 10 HOH H 19 280 55 HOH HOH . T 10 HOH H 20 281 56 HOH HOH . T 10 HOH H 21 282 57 HOH HOH . T 10 HOH H 22 283 58 HOH HOH . T 10 HOH H 23 284 59 HOH HOH . T 10 HOH H 24 285 60 HOH HOH . T 10 HOH H 25 286 61 HOH HOH . T 10 HOH H 26 287 62 HOH HOH . T 10 HOH H 27 288 63 HOH HOH . T 10 HOH H 28 289 64 HOH HOH . T 10 HOH H 29 290 74 HOH HOH . T 10 HOH H 30 291 75 HOH HOH . T 10 HOH H 31 292 76 HOH HOH . T 10 HOH H 32 293 89 HOH HOH . T 10 HOH H 33 294 94 HOH HOH . T 10 HOH H 34 295 95 HOH HOH . T 10 HOH H 35 296 97 HOH HOH . T 10 HOH H 36 297 103 HOH HOH . T 10 HOH H 37 298 105 HOH HOH . T 10 HOH H 38 299 111 HOH HOH . T 10 HOH H 39 300 113 HOH HOH . T 10 HOH H 40 301 115 HOH HOH . T 10 HOH H 41 302 116 HOH HOH . T 10 HOH H 42 303 117 HOH HOH . T 10 HOH H 43 304 121 HOH HOH . T 10 HOH H 44 305 123 HOH HOH . T 10 HOH H 45 306 124 HOH HOH . T 10 HOH H 46 307 125 HOH HOH . T 10 HOH H 47 308 126 HOH HOH . T 10 HOH H 48 309 128 HOH HOH . T 10 HOH H 49 310 133 HOH HOH . T 10 HOH H 50 311 135 HOH HOH . T 10 HOH H 51 312 136 HOH HOH . T 10 HOH H 52 313 139 HOH HOH . T 10 HOH H 53 314 140 HOH HOH . T 10 HOH H 54 315 141 HOH HOH . T 10 HOH H 55 316 143 HOH HOH . T 10 HOH H 56 317 147 HOH HOH . T 10 HOH H 57 318 148 HOH HOH . T 10 HOH H 58 319 149 HOH HOH . T 10 HOH H 59 320 151 HOH HOH . T 10 HOH H 60 321 152 HOH HOH . T 10 HOH H 61 322 155 HOH HOH . T 10 HOH H 62 323 156 HOH HOH . T 10 HOH H 63 324 162 HOH HOH . T 10 HOH H 64 325 166 HOH HOH . T 10 HOH H 65 326 169 HOH HOH . T 10 HOH H 66 327 170 HOH HOH . T 10 HOH H 67 328 171 HOH HOH . T 10 HOH H 68 329 172 HOH HOH . T 10 HOH H 69 330 173 HOH HOH . T 10 HOH H 70 331 176 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LDA . . . I 7 8.703 16.125 49.582 1 75.63 ? N1 LDA 307 L 1 HETATM 2 O O1 LDA . . . I 7 9.58 15.38 49.996 1 77.85 ? O1 LDA 307 L 1 HETATM 3 C CM1 LDA . . . I 7 9.037 17.513 49.881 1 75.55 ? CM1 LDA 307 L 1 HETATM 4 C CM2 LDA . . . I 7 7.428 15.814 50.22 1 75.09 ? CM2 LDA 307 L 1 HETATM 5 C C1 LDA . . . I 7 8.552 15.97 48.139 1 73.22 ? C1 LDA 307 L 1 HETATM 6 C C2 LDA . . . I 7 9.61 16.38 47.123 1 69.67 ? C2 LDA 307 L 1 HETATM 7 C C3 LDA . . . I 7 9.152 16.059 45.714 1 67.17 ? C3 LDA 307 L 1 HETATM 8 C C4 LDA . . . I 7 9.203 14.568 45.458 1 63.25 ? C4 LDA 307 L 1 HETATM 9 C C5 LDA . . . I 7 10.604 14.143 45.077 1 60.84 ? C5 LDA 307 L 1 HETATM 10 C C6 LDA . . . I 7 10.919 14.471 43.625 1 59.75 ? C6 LDA 307 L 1 HETATM 11 C C7 LDA . . . I 7 10.15 13.55 42.692 1 59.41 ? C7 LDA 307 L 1 HETATM 12 C C8 LDA . . . I 7 10.762 13.507 41.303 1 59.52 ? C8 LDA 307 L 1 HETATM 13 C C9 LDA . . . I 7 10.128 12.405 40.472 1 60.35 ? C9 LDA 307 L 1 HETATM 14 C C10 LDA . . . I 7 10.836 12.232 39.139 1 63.01 ? C10 LDA 307 L 1 HETATM 15 C C11 LDA . . . I 7 10.181 11.148 38.292 1 63.68 ? C11 LDA 307 L 1 HETATM 16 C C12 LDA . . . I 7 10.879 10.934 36.963 1 63.5 ? C12 LDA 307 L 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #