data_2GMV
#
_model_server_result.job_id            8au-LWl47AmRTb9z9g8sJg 
_model_server_result.datetime_utc      '2025-07-03 20:50:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2gmv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":701}' 
#
_entry.id    2GMV 
#
_exptl.entry_id    2GMV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          145.09 
_cell.angle_gamma         90 
_cell.entry_id            2GMV 
_cell.length_a            128.011 
_cell.length_b            66.134 
_cell.length_c            137.36 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2GMV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,H 1 1 
B,F,G,I 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NZ LYS 247 A LYS 244 1_555 C MN MN . A MN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? 
metalc ? metalc2 A NE2 HIS 267 A HIS 264 1_555 C MN MN . A MN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? 
metalc ? metalc3 A OD1 ASP 314 A ASP 311 1_555 C MN MN . A MN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc4 B NZ LYS 247 B LYS 244 1_555 F MN MN . B MN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? 
metalc ? metalc5 B NE2 HIS 267 B HIS 264 1_555 F MN MN . B MN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? 
metalc ? metalc6 B OD1 ASP 314 B ASP 311 1_555 F MN MN . B MN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2GMV 
_atom_sites.fract_transf_matrix[1][1]    0.007812 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.011194 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015121 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012721 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MN A 1 701 701 MN MN . 
D 3 PEP A 1 702 301 PEP PEP . 
E 4 UN8 A 1 703 601 UN8 UN8 . 
F 2 MN B 1 701 701 MN MN . 
G 3 PEP B 1 702 401 PEP PEP . 
H 5 HOH A 1 704 1 HOH HOH . 
H 5 HOH A 2 705 2 HOH HOH . 
H 5 HOH A 3 706 3 HOH HOH . 
H 5 HOH A 4 707 5 HOH HOH . 
H 5 HOH A 5 708 6 HOH HOH . 
H 5 HOH A 6 709 7 HOH HOH . 
H 5 HOH A 7 710 9 HOH HOH . 
H 5 HOH A 8 711 10 HOH HOH . 
H 5 HOH A 9 712 11 HOH HOH . 
H 5 HOH A 10 713 12 HOH HOH . 
H 5 HOH A 11 714 13 HOH HOH . 
H 5 HOH A 12 715 14 HOH HOH . 
H 5 HOH A 13 716 15 HOH HOH . 
H 5 HOH A 14 717 16 HOH HOH . 
H 5 HOH A 15 718 17 HOH HOH . 
H 5 HOH A 16 719 18 HOH HOH . 
H 5 HOH A 17 720 19 HOH HOH . 
H 5 HOH A 18 721 20 HOH HOH . 
H 5 HOH A 19 722 21 HOH HOH . 
H 5 HOH A 20 723 22 HOH HOH . 
H 5 HOH A 21 724 23 HOH HOH . 
H 5 HOH A 22 725 24 HOH HOH . 
H 5 HOH A 23 726 25 HOH HOH . 
H 5 HOH A 24 727 26 HOH HOH . 
H 5 HOH A 25 728 28 HOH HOH . 
H 5 HOH A 26 729 29 HOH HOH . 
H 5 HOH A 27 730 31 HOH HOH . 
H 5 HOH A 28 731 32 HOH HOH . 
H 5 HOH A 29 732 34 HOH HOH . 
H 5 HOH A 30 733 35 HOH HOH . 
H 5 HOH A 31 734 36 HOH HOH . 
H 5 HOH A 32 735 37 HOH HOH . 
H 5 HOH A 33 736 38 HOH HOH . 
H 5 HOH A 34 737 39 HOH HOH . 
H 5 HOH A 35 738 40 HOH HOH . 
H 5 HOH A 36 739 41 HOH HOH . 
H 5 HOH A 37 740 42 HOH HOH . 
H 5 HOH A 38 741 43 HOH HOH . 
H 5 HOH A 39 742 44 HOH HOH . 
H 5 HOH A 40 743 45 HOH HOH . 
H 5 HOH A 41 744 46 HOH HOH . 
H 5 HOH A 42 745 47 HOH HOH . 
H 5 HOH A 43 746 48 HOH HOH . 
H 5 HOH A 44 747 49 HOH HOH . 
H 5 HOH A 45 748 50 HOH HOH . 
H 5 HOH A 46 749 51 HOH HOH . 
H 5 HOH A 47 750 52 HOH HOH . 
H 5 HOH A 48 751 53 HOH HOH . 
H 5 HOH A 49 752 54 HOH HOH . 
H 5 HOH A 50 753 55 HOH HOH . 
H 5 HOH A 51 754 56 HOH HOH . 
H 5 HOH A 52 755 57 HOH HOH . 
H 5 HOH A 53 756 58 HOH HOH . 
H 5 HOH A 54 757 59 HOH HOH . 
H 5 HOH A 55 758 60 HOH HOH . 
H 5 HOH A 56 759 61 HOH HOH . 
H 5 HOH A 57 760 62 HOH HOH . 
H 5 HOH A 58 761 63 HOH HOH . 
H 5 HOH A 59 762 64 HOH HOH . 
H 5 HOH A 60 763 65 HOH HOH . 
H 5 HOH A 61 764 66 HOH HOH . 
H 5 HOH A 62 765 67 HOH HOH . 
H 5 HOH A 63 766 68 HOH HOH . 
H 5 HOH A 64 767 69 HOH HOH . 
H 5 HOH A 65 768 70 HOH HOH . 
H 5 HOH A 66 769 71 HOH HOH . 
H 5 HOH A 67 770 75 HOH HOH . 
H 5 HOH A 68 771 76 HOH HOH . 
H 5 HOH A 69 772 77 HOH HOH . 
H 5 HOH A 70 773 78 HOH HOH . 
H 5 HOH A 71 774 79 HOH HOH . 
H 5 HOH A 72 775 80 HOH HOH . 
H 5 HOH A 73 776 83 HOH HOH . 
H 5 HOH A 74 777 84 HOH HOH . 
H 5 HOH A 75 778 85 HOH HOH . 
H 5 HOH A 76 779 86 HOH HOH . 
H 5 HOH A 77 780 89 HOH HOH . 
H 5 HOH A 78 781 90 HOH HOH . 
H 5 HOH A 79 782 94 HOH HOH . 
H 5 HOH A 80 783 95 HOH HOH . 
H 5 HOH A 81 784 96 HOH HOH . 
H 5 HOH A 82 785 97 HOH HOH . 
H 5 HOH A 83 786 98 HOH HOH . 
H 5 HOH A 84 787 99 HOH HOH . 
H 5 HOH A 85 788 100 HOH HOH . 
H 5 HOH A 86 789 101 HOH HOH . 
H 5 HOH A 87 790 102 HOH HOH . 
H 5 HOH A 88 791 103 HOH HOH . 
H 5 HOH A 89 792 104 HOH HOH . 
H 5 HOH A 90 793 105 HOH HOH . 
H 5 HOH A 91 794 106 HOH HOH . 
H 5 HOH A 92 795 109 HOH HOH . 
H 5 HOH A 93 796 116 HOH HOH . 
H 5 HOH A 94 797 118 HOH HOH . 
H 5 HOH A 95 798 119 HOH HOH . 
H 5 HOH A 96 799 120 HOH HOH . 
H 5 HOH A 97 800 121 HOH HOH . 
H 5 HOH A 98 801 122 HOH HOH . 
H 5 HOH A 99 802 123 HOH HOH . 
H 5 HOH A 100 803 124 HOH HOH . 
H 5 HOH A 101 804 125 HOH HOH . 
H 5 HOH A 102 805 126 HOH HOH . 
H 5 HOH A 103 806 127 HOH HOH . 
H 5 HOH A 104 807 129 HOH HOH . 
H 5 HOH A 105 808 130 HOH HOH . 
H 5 HOH A 106 809 131 HOH HOH . 
H 5 HOH A 107 810 132 HOH HOH . 
I 5 HOH B 1 703 4 HOH HOH . 
I 5 HOH B 2 704 8 HOH HOH . 
I 5 HOH B 3 705 27 HOH HOH . 
I 5 HOH B 4 706 30 HOH HOH . 
I 5 HOH B 5 707 33 HOH HOH . 
I 5 HOH B 6 708 72 HOH HOH . 
I 5 HOH B 7 709 73 HOH HOH . 
I 5 HOH B 8 710 74 HOH HOH . 
I 5 HOH B 9 711 81 HOH HOH . 
I 5 HOH B 10 712 82 HOH HOH . 
I 5 HOH B 11 713 87 HOH HOH . 
I 5 HOH B 12 714 88 HOH HOH . 
I 5 HOH B 13 715 91 HOH HOH . 
I 5 HOH B 14 716 92 HOH HOH . 
I 5 HOH B 15 717 93 HOH HOH . 
I 5 HOH B 16 718 107 HOH HOH . 
I 5 HOH B 17 719 108 HOH HOH . 
I 5 HOH B 18 720 110 HOH HOH . 
I 5 HOH B 19 721 111 HOH HOH . 
I 5 HOH B 20 722 112 HOH HOH . 
I 5 HOH B 21 723 113 HOH HOH . 
I 5 HOH B 22 724 114 HOH HOH . 
I 5 HOH B 23 725 115 HOH HOH . 
I 5 HOH B 24 726 117 HOH HOH . 
I 5 HOH B 25 727 128 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         F 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               51.931 
_atom_site.Cartn_y               -9.764 
_atom_site.Cartn_z               -18.191 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        60.24 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           701 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#