data_2GMV # _model_server_result.job_id oxQM92PjS8CPOxeNgZs7ow _model_server_result.datetime_utc '2025-07-01 15:45:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2gmv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":703}' # _entry.id 2GMV # _exptl.entry_id 2GMV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 565.619 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(4-{[3-BUTYL-1-(2-FLUOROBENZYL)-2,6-DIOXO-2,3,6,7-TETRAHYDRO-1H-PURIN-8-YL]METHYL}PHENYL)-1-METHYL-1H-IMIDAZOLE-4-SULFONAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 145.09 _cell.angle_gamma 90 _cell.entry_id 2GMV _cell.length_a 128.011 _cell.length_b 66.134 _cell.length_c 137.36 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2GMV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1 B,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NZ LYS 247 A LYS 244 1_555 C MN MN . A MN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc2 A NE2 HIS 267 A HIS 264 1_555 C MN MN . A MN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc3 A OD1 ASP 314 A ASP 311 1_555 C MN MN . A MN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc4 B NZ LYS 247 B LYS 244 1_555 F MN MN . B MN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc5 B NE2 HIS 267 B HIS 264 1_555 F MN MN . B MN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc6 B OD1 ASP 314 B ASP 311 1_555 F MN MN . B MN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? # _chem_comp.formula 'C27 H28 F N7 O4 S' _chem_comp.formula_weight 565.619 _chem_comp.id UN8 _chem_comp.mon_nstd_flag . _chem_comp.name N-(4-{[3-BUTYL-1-(2-FLUOROBENZYL)-2,6-DIOXO-2,3,6,7-TETRAHYDRO-1H-PURIN-8-YL]METHYL}PHENYL)-1-METHYL-1H-IMIDAZOLE-4-SULFONAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 S1 UN8 doub 372 n n S1 O1 UN8 doub 373 n n S1 C1 UN8 sing 374 n n S1 N4 UN8 sing 375 n n C1 C2 UN8 doub 376 n y C1 N7 UN8 sing 377 n y C2 N5 UN8 sing 378 n y C2 H2 UN8 sing 379 n n N5 C4 UN8 sing 380 n n N5 C3 UN8 sing 381 n y C4 H41 UN8 sing 382 n n C4 H42 UN8 sing 383 n n C4 H43 UN8 sing 384 n n C3 N7 UN8 doub 385 n y C3 H3 UN8 sing 386 n n N4 C8 UN8 sing 387 n n N4 HN4 UN8 sing 388 n n C8 C9 UN8 doub 389 n y C8 C7 UN8 sing 390 n y C9 C30 UN8 sing 391 n y C9 H9 UN8 sing 392 n n C30 C5 UN8 doub 393 n y C30 H30 UN8 sing 394 n n C7 C6 UN8 doub 395 n y C7 H7 UN8 sing 396 n n C6 C5 UN8 sing 397 n y C6 H6 UN8 sing 398 n n C5 C16 UN8 sing 399 n n C16 C14 UN8 sing 400 n n C16 H161 UN8 sing 401 n n C16 H162 UN8 sing 402 n n C14 N15 UN8 sing 403 n y C14 N13 UN8 doub 404 n y N15 C55 UN8 sing 405 n y N15 HN15 UN8 sing 406 n n C55 C56 UN8 sing 407 n y C55 C54 UN8 doub 408 n y C56 O57 UN8 doub 409 n n C56 N51 UN8 sing 410 n y C54 N13 UN8 sing 411 n y C54 N53 UN8 sing 412 n y N53 C59 UN8 sing 413 n n N53 C52 UN8 sing 414 n y C59 C10 UN8 sing 415 n n C59 H591 UN8 sing 416 n n C59 H592 UN8 sing 417 n n C10 C11 UN8 sing 418 n n C10 H101 UN8 sing 419 n n C10 H102 UN8 sing 420 n n C11 C12 UN8 sing 421 n n C11 H111 UN8 sing 422 n n C11 H112 UN8 sing 423 n n C12 H121 UN8 sing 424 n n C12 H122 UN8 sing 425 n n C12 H123 UN8 sing 426 n n C52 O58 UN8 doub 427 n n C52 N51 UN8 sing 428 n y N51 C17 UN8 sing 429 n n C17 C18 UN8 sing 430 n n C17 H171 UN8 sing 431 n n C17 H172 UN8 sing 432 n n C18 C19 UN8 sing 433 n y C18 C23 UN8 doub 434 n y C19 F24 UN8 sing 435 n n C19 C20 UN8 doub 436 n y C20 C21 UN8 sing 437 n y C20 H20 UN8 sing 438 n n C21 C22 UN8 doub 439 n y C21 H21 UN8 sing 440 n n C22 C23 UN8 sing 441 n y C22 H22 UN8 sing 442 n n C23 H23 UN8 sing 443 n n # _atom_sites.entry_id 2GMV _atom_sites.fract_transf_matrix[1][1] 0.007812 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.011194 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015121 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012721 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 701 701 MN MN . D 3 PEP A 1 702 301 PEP PEP . E 4 UN8 A 1 703 601 UN8 UN8 . F 2 MN B 1 701 701 MN MN . G 3 PEP B 1 702 401 PEP PEP . H 5 HOH A 1 704 1 HOH HOH . H 5 HOH A 2 705 2 HOH HOH . H 5 HOH A 3 706 3 HOH HOH . H 5 HOH A 4 707 5 HOH HOH . H 5 HOH A 5 708 6 HOH HOH . H 5 HOH A 6 709 7 HOH HOH . H 5 HOH A 7 710 9 HOH HOH . H 5 HOH A 8 711 10 HOH HOH . H 5 HOH A 9 712 11 HOH HOH . H 5 HOH A 10 713 12 HOH HOH . H 5 HOH A 11 714 13 HOH HOH . H 5 HOH A 12 715 14 HOH HOH . H 5 HOH A 13 716 15 HOH HOH . H 5 HOH A 14 717 16 HOH HOH . H 5 HOH A 15 718 17 HOH HOH . H 5 HOH A 16 719 18 HOH HOH . H 5 HOH A 17 720 19 HOH HOH . H 5 HOH A 18 721 20 HOH HOH . H 5 HOH A 19 722 21 HOH HOH . H 5 HOH A 20 723 22 HOH HOH . H 5 HOH A 21 724 23 HOH HOH . H 5 HOH A 22 725 24 HOH HOH . H 5 HOH A 23 726 25 HOH HOH . H 5 HOH A 24 727 26 HOH HOH . H 5 HOH A 25 728 28 HOH HOH . H 5 HOH A 26 729 29 HOH HOH . H 5 HOH A 27 730 31 HOH HOH . H 5 HOH A 28 731 32 HOH HOH . H 5 HOH A 29 732 34 HOH HOH . H 5 HOH A 30 733 35 HOH HOH . H 5 HOH A 31 734 36 HOH HOH . H 5 HOH A 32 735 37 HOH HOH . H 5 HOH A 33 736 38 HOH HOH . H 5 HOH A 34 737 39 HOH HOH . H 5 HOH A 35 738 40 HOH HOH . H 5 HOH A 36 739 41 HOH HOH . H 5 HOH A 37 740 42 HOH HOH . H 5 HOH A 38 741 43 HOH HOH . H 5 HOH A 39 742 44 HOH HOH . H 5 HOH A 40 743 45 HOH HOH . H 5 HOH A 41 744 46 HOH HOH . H 5 HOH A 42 745 47 HOH HOH . H 5 HOH A 43 746 48 HOH HOH . H 5 HOH A 44 747 49 HOH HOH . H 5 HOH A 45 748 50 HOH HOH . H 5 HOH A 46 749 51 HOH HOH . H 5 HOH A 47 750 52 HOH HOH . H 5 HOH A 48 751 53 HOH HOH . H 5 HOH A 49 752 54 HOH HOH . H 5 HOH A 50 753 55 HOH HOH . H 5 HOH A 51 754 56 HOH HOH . H 5 HOH A 52 755 57 HOH HOH . H 5 HOH A 53 756 58 HOH HOH . H 5 HOH A 54 757 59 HOH HOH . H 5 HOH A 55 758 60 HOH HOH . H 5 HOH A 56 759 61 HOH HOH . H 5 HOH A 57 760 62 HOH HOH . H 5 HOH A 58 761 63 HOH HOH . H 5 HOH A 59 762 64 HOH HOH . H 5 HOH A 60 763 65 HOH HOH . H 5 HOH A 61 764 66 HOH HOH . H 5 HOH A 62 765 67 HOH HOH . H 5 HOH A 63 766 68 HOH HOH . H 5 HOH A 64 767 69 HOH HOH . H 5 HOH A 65 768 70 HOH HOH . H 5 HOH A 66 769 71 HOH HOH . H 5 HOH A 67 770 75 HOH HOH . H 5 HOH A 68 771 76 HOH HOH . H 5 HOH A 69 772 77 HOH HOH . H 5 HOH A 70 773 78 HOH HOH . H 5 HOH A 71 774 79 HOH HOH . H 5 HOH A 72 775 80 HOH HOH . H 5 HOH A 73 776 83 HOH HOH . H 5 HOH A 74 777 84 HOH HOH . H 5 HOH A 75 778 85 HOH HOH . H 5 HOH A 76 779 86 HOH HOH . H 5 HOH A 77 780 89 HOH HOH . H 5 HOH A 78 781 90 HOH HOH . H 5 HOH A 79 782 94 HOH HOH . H 5 HOH A 80 783 95 HOH HOH . H 5 HOH A 81 784 96 HOH HOH . H 5 HOH A 82 785 97 HOH HOH . H 5 HOH A 83 786 98 HOH HOH . H 5 HOH A 84 787 99 HOH HOH . H 5 HOH A 85 788 100 HOH HOH . H 5 HOH A 86 789 101 HOH HOH . H 5 HOH A 87 790 102 HOH HOH . H 5 HOH A 88 791 103 HOH HOH . H 5 HOH A 89 792 104 HOH HOH . H 5 HOH A 90 793 105 HOH HOH . H 5 HOH A 91 794 106 HOH HOH . H 5 HOH A 92 795 109 HOH HOH . H 5 HOH A 93 796 116 HOH HOH . H 5 HOH A 94 797 118 HOH HOH . H 5 HOH A 95 798 119 HOH HOH . H 5 HOH A 96 799 120 HOH HOH . H 5 HOH A 97 800 121 HOH HOH . H 5 HOH A 98 801 122 HOH HOH . H 5 HOH A 99 802 123 HOH HOH . H 5 HOH A 100 803 124 HOH HOH . H 5 HOH A 101 804 125 HOH HOH . H 5 HOH A 102 805 126 HOH HOH . H 5 HOH A 103 806 127 HOH HOH . H 5 HOH A 104 807 129 HOH HOH . H 5 HOH A 105 808 130 HOH HOH . H 5 HOH A 106 809 131 HOH HOH . H 5 HOH A 107 810 132 HOH HOH . I 5 HOH B 1 703 4 HOH HOH . I 5 HOH B 2 704 8 HOH HOH . I 5 HOH B 3 705 27 HOH HOH . I 5 HOH B 4 706 30 HOH HOH . I 5 HOH B 5 707 33 HOH HOH . I 5 HOH B 6 708 72 HOH HOH . I 5 HOH B 7 709 73 HOH HOH . I 5 HOH B 8 710 74 HOH HOH . I 5 HOH B 9 711 81 HOH HOH . I 5 HOH B 10 712 82 HOH HOH . I 5 HOH B 11 713 87 HOH HOH . I 5 HOH B 12 714 88 HOH HOH . I 5 HOH B 13 715 91 HOH HOH . I 5 HOH B 14 716 92 HOH HOH . I 5 HOH B 15 717 93 HOH HOH . I 5 HOH B 16 718 107 HOH HOH . I 5 HOH B 17 719 108 HOH HOH . I 5 HOH B 18 720 110 HOH HOH . I 5 HOH B 19 721 111 HOH HOH . I 5 HOH B 20 722 112 HOH HOH . I 5 HOH B 21 723 113 HOH HOH . I 5 HOH B 22 724 114 HOH HOH . I 5 HOH B 23 725 115 HOH HOH . I 5 HOH B 24 726 117 HOH HOH . I 5 HOH B 25 727 128 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 UN8 . . . E 4 21.884 -3.389 46.281 1 62.29 ? O2 UN8 703 A 1 HETATM 2 S S1 UN8 . . . E 4 23.12 -4.054 46.272 1 67.49 ? S1 UN8 703 A 1 HETATM 3 O O1 UN8 . . . E 4 23.936 -4.324 47.372 1 62.23 ? O1 UN8 703 A 1 HETATM 4 C C1 UN8 . . . E 4 24.207 -3.265 45.103 1 45.52 ? C1 UN8 703 A 1 HETATM 5 C C2 UN8 . . . E 4 24.162 -2.016 44.404 1 44.49 ? C2 UN8 703 A 1 HETATM 6 N N5 UN8 . . . E 4 25.401 -1.76 43.802 1 46.77 ? N5 UN8 703 A 1 HETATM 7 C C4 UN8 . . . E 4 25.778 -0.654 42.961 1 38.54 ? C4 UN8 703 A 1 HETATM 8 C C3 UN8 . . . E 4 26.243 -2.812 44.227 1 42.92 ? C3 UN8 703 A 1 HETATM 9 N N7 UN8 . . . E 4 25.572 -3.653 45.036 1 47.65 ? N7 UN8 703 A 1 HETATM 10 N N4 UN8 . . . E 4 22.818 -5.647 45.766 1 52.29 ? N4 UN8 703 A 1 HETATM 11 C C8 UN8 . . . E 4 22.327 -6.105 44.515 1 38.5 ? C8 UN8 703 A 1 HETATM 12 C C9 UN8 . . . E 4 22.611 -7.396 43.987 1 38.7 ? C9 UN8 703 A 1 HETATM 13 C C30 UN8 . . . E 4 22.18 -7.808 42.722 1 33.52 ? C30 UN8 703 A 1 HETATM 14 C C7 UN8 . . . E 4 21.577 -5.284 43.649 1 31.17 ? C7 UN8 703 A 1 HETATM 15 C C6 UN8 . . . E 4 21.133 -5.706 42.399 1 29.65 ? C6 UN8 703 A 1 HETATM 16 C C5 UN8 . . . E 4 21.407 -6.988 41.889 1 32.54 ? C5 UN8 703 A 1 HETATM 17 C C16 UN8 . . . E 4 20.995 -7.378 40.498 1 26.47 ? C16 UN8 703 A 1 HETATM 18 C C14 UN8 . . . E 4 21.907 -6.699 39.494 1 26.43 ? C14 UN8 703 A 1 HETATM 19 N N15 UN8 . . . E 4 23.13 -7.225 39.051 1 22.73 ? N15 UN8 703 A 1 HETATM 20 C C55 UN8 . . . E 4 23.689 -6.285 38.185 1 24.42 ? C55 UN8 703 A 1 HETATM 21 C C56 UN8 . . . E 4 24.918 -6.355 37.399 1 23.3 ? C56 UN8 703 A 1 HETATM 22 O O57 UN8 . . . E 4 25.72 -7.294 37.439 1 24.64 ? O57 UN8 703 A 1 HETATM 23 C C54 UN8 . . . E 4 22.78 -5.181 38.146 1 23.78 ? C54 UN8 703 A 1 HETATM 24 N N13 UN8 . . . E 4 21.681 -5.456 38.973 1 25.99 ? N13 UN8 703 A 1 HETATM 25 N N53 UN8 . . . E 4 23.077 -4.062 37.374 1 27.29 ? N53 UN8 703 A 1 HETATM 26 C C59 UN8 . . . E 4 22.116 -2.986 37.132 1 28.42 ? C59 UN8 703 A 1 HETATM 27 C C10 UN8 . . . E 4 21.434 -3.138 35.769 1 27.61 ? C10 UN8 703 A 1 HETATM 28 C C11 UN8 . . . E 4 20.568 -1.97 35.348 1 29.16 ? C11 UN8 703 A 1 HETATM 29 C C12 UN8 . . . E 4 20.028 -2.246 33.964 1 33.52 ? C12 UN8 703 A 1 HETATM 30 C C52 UN8 . . . E 4 24.267 -4.127 36.583 1 26.42 ? C52 UN8 703 A 1 HETATM 31 O O58 UN8 . . . E 4 24.561 -3.149 35.858 1 23.92 ? O58 UN8 703 A 1 HETATM 32 N N51 UN8 . . . E 4 25.219 -5.195 36.685 1 23.31 ? N51 UN8 703 A 1 HETATM 33 C C17 UN8 . . . E 4 26.205 -5.146 35.618 1 22.28 ? C17 UN8 703 A 1 HETATM 34 C C18 UN8 . . . E 4 27.548 -4.687 36.091 1 26.8 ? C18 UN8 703 A 1 HETATM 35 C C19 UN8 . . . E 4 28.709 -5.425 35.822 1 23.8 ? C19 UN8 703 A 1 HETATM 36 F F24 UN8 . . . E 4 28.614 -6.574 35.118 1 23.19 ? F24 UN8 703 A 1 HETATM 37 C C20 UN8 . . . E 4 29.97 -4.972 36.251 1 27.26 ? C20 UN8 703 A 1 HETATM 38 C C21 UN8 . . . E 4 30.077 -3.789 36.974 1 26.64 ? C21 UN8 703 A 1 HETATM 39 C C22 UN8 . . . E 4 28.929 -3.047 37.256 1 28.67 ? C22 UN8 703 A 1 HETATM 40 C C23 UN8 . . . E 4 27.684 -3.49 36.812 1 27.2 ? C23 UN8 703 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 40 #