data_2GN2 # _model_server_result.job_id m4m0cZR3t1LS09VFlrowVg _model_server_result.datetime_utc '2025-02-05 17:00:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2gn2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 2GN2 # _exptl.entry_id 2GN2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2GN2 _cell.length_a 161.145 _cell.length_b 161.145 _cell.length_c 68.723 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2GN2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 177 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -80.5725 -139.555664 0 3 'crystal symmetry operation' 7_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 10_445 -y-1,-x-1,-z 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -80.5725 -139.555664 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 131 A CYS 118 1_555 A SG CYS 131 A CYS 118 11_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.864 ? covale ? covale1 A C PHE 70 A PHE 57 1_555 A N LLP 71 A LLP 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale2 A C LLP 71 A LLP 58 1_555 A N ILE 72 A ILE 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A O GLU 184 A GLU 171 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc2 A O GLU 184 A GLU 171 4_445 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2GN2 _atom_sites.fract_transf_matrix[1][1] 0.006206 _atom_sites.fract_transf_matrix[1][2] 0.003583 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007166 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014551 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 401 401 NA NA . C 3 C5P A 1 400 400 C5P C5P . D 4 HOH A 1 402 1 HOH HOH . D 4 HOH A 2 403 2 HOH HOH . D 4 HOH A 3 404 3 HOH HOH . D 4 HOH A 4 405 4 HOH HOH . D 4 HOH A 5 406 5 HOH HOH . D 4 HOH A 6 407 6 HOH HOH . D 4 HOH A 7 408 7 HOH HOH . D 4 HOH A 8 409 8 HOH HOH . D 4 HOH A 9 410 9 HOH HOH . D 4 HOH A 10 411 10 HOH HOH . D 4 HOH A 11 412 11 HOH HOH . D 4 HOH A 12 413 12 HOH HOH . D 4 HOH A 13 414 13 HOH HOH . D 4 HOH A 14 415 14 HOH HOH . D 4 HOH A 15 416 15 HOH HOH . D 4 HOH A 16 417 16 HOH HOH . D 4 HOH A 17 418 17 HOH HOH . D 4 HOH A 18 419 18 HOH HOH . D 4 HOH A 19 420 19 HOH HOH . D 4 HOH A 20 421 20 HOH HOH . D 4 HOH A 21 422 21 HOH HOH . D 4 HOH A 22 423 22 HOH HOH . D 4 HOH A 23 424 23 HOH HOH . D 4 HOH A 24 425 24 HOH HOH . D 4 HOH A 25 426 25 HOH HOH . D 4 HOH A 26 427 26 HOH HOH . D 4 HOH A 27 428 27 HOH HOH . D 4 HOH A 28 429 28 HOH HOH . D 4 HOH A 29 430 29 HOH HOH . D 4 HOH A 30 431 30 HOH HOH . D 4 HOH A 31 432 31 HOH HOH . D 4 HOH A 32 433 32 HOH HOH . D 4 HOH A 33 434 33 HOH HOH . D 4 HOH A 34 435 34 HOH HOH . D 4 HOH A 35 436 35 HOH HOH . D 4 HOH A 36 437 36 HOH HOH . D 4 HOH A 37 438 37 HOH HOH . D 4 HOH A 38 439 38 HOH HOH . D 4 HOH A 39 440 39 HOH HOH . D 4 HOH A 40 441 40 HOH HOH . D 4 HOH A 41 442 41 HOH HOH . D 4 HOH A 42 443 42 HOH HOH . D 4 HOH A 43 444 43 HOH HOH . D 4 HOH A 44 445 44 HOH HOH . D 4 HOH A 45 446 45 HOH HOH . D 4 HOH A 46 447 46 HOH HOH . D 4 HOH A 47 448 47 HOH HOH . D 4 HOH A 48 449 48 HOH HOH . D 4 HOH A 49 450 49 HOH HOH . D 4 HOH A 50 451 50 HOH HOH . D 4 HOH A 51 452 51 HOH HOH . D 4 HOH A 52 453 52 HOH HOH . D 4 HOH A 53 454 53 HOH HOH . D 4 HOH A 54 455 54 HOH HOH . D 4 HOH A 55 456 55 HOH HOH . D 4 HOH A 56 457 56 HOH HOH . D 4 HOH A 57 458 57 HOH HOH . D 4 HOH A 58 459 58 HOH HOH . D 4 HOH A 59 460 59 HOH HOH . D 4 HOH A 60 461 60 HOH HOH . D 4 HOH A 61 462 61 HOH HOH . D 4 HOH A 62 463 62 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -40.285 _atom_site.Cartn_y -69.844 _atom_site.Cartn_z -26.025 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 76.92 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #