data_2GN9 # _model_server_result.job_id -YXILbyKYXseq6qRHZZUIA _model_server_result.datetime_utc '2024-12-21 13:47:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2gn9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":336}' # _entry.id 2GN9 # _exptl.entry_id 2GN9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.237 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2GN9 _cell.length_a 112.376 _cell.length_b 112.376 _cell.length_c 107.349 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2GN9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS hexameric 6 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1,2,3 B,E,F,G,I 2 1 A,C,D,H 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 56.188 97.320471 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -56.188 97.320471 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H13 N O4 S' _chem_comp.formula_weight 195.237 _chem_comp.id MES _chem_comp.mon_nstd_flag . _chem_comp.name '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 MES sing 218 n n O1 C6 MES sing 219 n n C2 C3 MES sing 220 n n C2 H21 MES sing 221 n n C2 H22 MES sing 222 n n C3 N4 MES sing 223 n n C3 H31 MES sing 224 n n C3 H32 MES sing 225 n n N4 C5 MES sing 226 n n N4 C7 MES sing 227 n n N4 HN4 MES sing 228 n n C5 C6 MES sing 229 n n C5 H51 MES sing 230 n n C5 H52 MES sing 231 n n C6 H61 MES sing 232 n n C6 H62 MES sing 233 n n C7 C8 MES sing 234 n n C7 H71 MES sing 235 n n C7 H72 MES sing 236 n n C8 S MES sing 237 n n C8 H81 MES sing 238 n n C8 H82 MES sing 239 n n S O1S MES doub 240 n n S O2S MES doub 241 n n S O3S MES sing 242 n n # _atom_sites.entry_id 2GN9 _atom_sites.fract_transf_matrix[1][1] 0.008899 _atom_sites.fract_transf_matrix[1][2] 0.005138 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010275 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009315 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 334 334 NAP NAP . D 3 UPG A 1 335 335 UPG UPG . E 2 NAP B 1 334 334 NAP NAP . F 3 UPG B 1 335 335 UPG UPG . G 4 MES B 1 336 336 MES MES . H 5 HOH A 1 336 1 HOH HOH . H 5 HOH A 2 337 2 HOH HOH . H 5 HOH A 3 338 8 HOH HOH . H 5 HOH A 4 339 16 HOH HOH . H 5 HOH A 5 340 17 HOH HOH . H 5 HOH A 6 341 18 HOH HOH . H 5 HOH A 7 342 20 HOH HOH . H 5 HOH A 8 343 22 HOH HOH . H 5 HOH A 9 344 23 HOH HOH . H 5 HOH A 10 345 24 HOH HOH . H 5 HOH A 11 346 25 HOH HOH . H 5 HOH A 12 347 26 HOH HOH . H 5 HOH A 13 348 27 HOH HOH . H 5 HOH A 14 349 31 HOH HOH . H 5 HOH A 15 350 32 HOH HOH . H 5 HOH A 16 351 35 HOH HOH . H 5 HOH A 17 352 36 HOH HOH . H 5 HOH A 18 353 39 HOH HOH . H 5 HOH A 19 354 41 HOH HOH . H 5 HOH A 20 355 44 HOH HOH . H 5 HOH A 21 356 45 HOH HOH . H 5 HOH A 22 357 46 HOH HOH . H 5 HOH A 23 358 48 HOH HOH . H 5 HOH A 24 359 49 HOH HOH . H 5 HOH A 25 360 53 HOH HOH . H 5 HOH A 26 361 56 HOH HOH . H 5 HOH A 27 362 57 HOH HOH . H 5 HOH A 28 363 58 HOH HOH . H 5 HOH A 29 364 59 HOH HOH . H 5 HOH A 30 365 60 HOH HOH . H 5 HOH A 31 366 64 HOH HOH . H 5 HOH A 32 367 66 HOH HOH . H 5 HOH A 33 368 70 HOH HOH . H 5 HOH A 34 369 74 HOH HOH . I 5 HOH B 1 337 3 HOH HOH . I 5 HOH B 2 338 4 HOH HOH . I 5 HOH B 3 339 5 HOH HOH . I 5 HOH B 4 340 6 HOH HOH . I 5 HOH B 5 341 7 HOH HOH . I 5 HOH B 6 342 9 HOH HOH . I 5 HOH B 7 343 10 HOH HOH . I 5 HOH B 8 344 11 HOH HOH . I 5 HOH B 9 345 12 HOH HOH . I 5 HOH B 10 346 13 HOH HOH . I 5 HOH B 11 347 14 HOH HOH . I 5 HOH B 12 348 15 HOH HOH . I 5 HOH B 13 349 19 HOH HOH . I 5 HOH B 14 350 21 HOH HOH . I 5 HOH B 15 351 28 HOH HOH . I 5 HOH B 16 352 29 HOH HOH . I 5 HOH B 17 353 30 HOH HOH . I 5 HOH B 18 354 33 HOH HOH . I 5 HOH B 19 355 34 HOH HOH . I 5 HOH B 20 356 37 HOH HOH . I 5 HOH B 21 357 38 HOH HOH . I 5 HOH B 22 358 40 HOH HOH . I 5 HOH B 23 359 42 HOH HOH . I 5 HOH B 24 360 43 HOH HOH . I 5 HOH B 25 361 47 HOH HOH . I 5 HOH B 26 362 50 HOH HOH . I 5 HOH B 27 363 51 HOH HOH . I 5 HOH B 28 364 52 HOH HOH . I 5 HOH B 29 365 54 HOH HOH . I 5 HOH B 30 366 55 HOH HOH . I 5 HOH B 31 367 61 HOH HOH . I 5 HOH B 32 368 62 HOH HOH . I 5 HOH B 33 369 63 HOH HOH . I 5 HOH B 34 370 65 HOH HOH . I 5 HOH B 35 371 67 HOH HOH . I 5 HOH B 36 372 68 HOH HOH . I 5 HOH B 37 373 69 HOH HOH . I 5 HOH B 38 374 71 HOH HOH . I 5 HOH B 39 375 72 HOH HOH . I 5 HOH B 40 376 73 HOH HOH . I 5 HOH B 41 377 75 HOH HOH . I 5 HOH B 42 378 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MES . . . G 4 9.517 69.123 14.191 1 68.33 ? O1 MES 336 B 1 HETATM 2 C C2 MES . . . G 4 10.234 69.562 13.036 1 71.3 ? C2 MES 336 B 1 HETATM 3 C C3 MES . . . G 4 11.297 70.56 13.504 1 73.33 ? C3 MES 336 B 1 HETATM 4 N N4 MES . . . G 4 10.625 71.691 14.126 1 76.38 ? N4 MES 336 B 1 HETATM 5 C C5 MES . . . G 4 9.859 71.224 15.268 1 74.29 ? C5 MES 336 B 1 HETATM 6 C C6 MES . . . G 4 8.814 70.221 14.776 1 70.85 ? C6 MES 336 B 1 HETATM 7 C C7 MES . . . G 4 11.613 72.632 14.581 1 72.65 ? C7 MES 336 B 1 HETATM 8 C C8 MES . . . G 4 11.577 73.87 13.688 1 78.17 ? C8 MES 336 B 1 HETATM 9 S S MES . . . G 4 13.248 74.516 13.793 1 80 ? S MES 336 B 1 HETATM 10 O O1S MES . . . G 4 13.396 75.01 15.159 1 80 ? O1S MES 336 B 1 HETATM 11 O O2S MES . . . G 4 13.292 75.572 12.789 1 80 ? O2S MES 336 B 1 HETATM 12 O O3S MES . . . G 4 14.128 73.395 13.486 1 80 ? O3S MES 336 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #