data_2GNA # _model_server_result.job_id 0ajUE2cUavWvrKxQHXNLWA _model_server_result.datetime_utc '2024-12-21 13:52:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2gna # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":336}' # _entry.id 2GNA # _exptl.entry_id 2GNA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.237 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2GNA _cell.length_a 112.218 _cell.length_b 112.218 _cell.length_c 107.348 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2GNA _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS hexameric 6 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1,2,3 B,E,F,G,I 2 1 A,C,D,H 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 56.109 97.183639 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -56.109 97.183639 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H13 N O4 S' _chem_comp.formula_weight 195.237 _chem_comp.id MES _chem_comp.mon_nstd_flag . _chem_comp.name '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 MES sing 280 n n O1 C6 MES sing 281 n n C2 C3 MES sing 282 n n C2 H21 MES sing 283 n n C2 H22 MES sing 284 n n C3 N4 MES sing 285 n n C3 H31 MES sing 286 n n C3 H32 MES sing 287 n n N4 C5 MES sing 288 n n N4 C7 MES sing 289 n n N4 HN4 MES sing 290 n n C5 C6 MES sing 291 n n C5 H51 MES sing 292 n n C5 H52 MES sing 293 n n C6 H61 MES sing 294 n n C6 H62 MES sing 295 n n C7 C8 MES sing 296 n n C7 H71 MES sing 297 n n C7 H72 MES sing 298 n n C8 S MES sing 299 n n C8 H81 MES sing 300 n n C8 H82 MES sing 301 n n S O1S MES doub 302 n n S O2S MES doub 303 n n S O3S MES sing 304 n n # _atom_sites.entry_id 2GNA _atom_sites.fract_transf_matrix[1][1] 0.008911 _atom_sites.fract_transf_matrix[1][2] 0.005145 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01029 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009315 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GDU A 1 335 335 GDU GDU . D 3 NAP A 1 334 334 NAP NAP . E 2 GDU B 1 335 335 GDU GDU . F 3 NAP B 1 334 334 NAP NAP . G 4 MES B 1 336 336 MES MES . H 5 HOH A 1 336 1 HOH HOH . H 5 HOH A 2 337 4 HOH HOH . H 5 HOH A 3 338 5 HOH HOH . H 5 HOH A 4 339 12 HOH HOH . H 5 HOH A 5 340 14 HOH HOH . H 5 HOH A 6 341 16 HOH HOH . H 5 HOH A 7 342 17 HOH HOH . H 5 HOH A 8 343 18 HOH HOH . H 5 HOH A 9 344 20 HOH HOH . H 5 HOH A 10 345 22 HOH HOH . H 5 HOH A 11 346 23 HOH HOH . H 5 HOH A 12 347 24 HOH HOH . H 5 HOH A 13 348 26 HOH HOH . H 5 HOH A 14 349 28 HOH HOH . H 5 HOH A 15 350 29 HOH HOH . H 5 HOH A 16 351 33 HOH HOH . H 5 HOH A 17 352 36 HOH HOH . H 5 HOH A 18 353 37 HOH HOH . H 5 HOH A 19 354 41 HOH HOH . H 5 HOH A 20 355 42 HOH HOH . H 5 HOH A 21 356 43 HOH HOH . H 5 HOH A 22 357 45 HOH HOH . H 5 HOH A 23 358 47 HOH HOH . H 5 HOH A 24 359 48 HOH HOH . H 5 HOH A 25 360 51 HOH HOH . H 5 HOH A 26 361 52 HOH HOH . H 5 HOH A 27 362 53 HOH HOH . H 5 HOH A 28 363 56 HOH HOH . H 5 HOH A 29 364 59 HOH HOH . H 5 HOH A 30 365 64 HOH HOH . H 5 HOH A 31 366 65 HOH HOH . H 5 HOH A 32 367 68 HOH HOH . H 5 HOH A 33 368 71 HOH HOH . H 5 HOH A 34 369 73 HOH HOH . H 5 HOH A 35 370 76 HOH HOH . H 5 HOH A 36 371 77 HOH HOH . H 5 HOH A 37 372 82 HOH HOH . H 5 HOH A 38 373 83 HOH HOH . H 5 HOH A 39 374 84 HOH HOH . H 5 HOH A 40 375 87 HOH HOH . H 5 HOH A 41 376 88 HOH HOH . H 5 HOH A 42 377 90 HOH HOH . H 5 HOH A 43 378 95 HOH HOH . H 5 HOH A 44 379 96 HOH HOH . H 5 HOH A 45 380 97 HOH HOH . H 5 HOH A 46 381 99 HOH HOH . H 5 HOH A 47 382 102 HOH HOH . H 5 HOH A 48 383 103 HOH HOH . H 5 HOH A 49 384 107 HOH HOH . H 5 HOH A 50 385 108 HOH HOH . H 5 HOH A 51 386 109 HOH HOH . H 5 HOH A 52 387 111 HOH HOH . H 5 HOH A 53 388 112 HOH HOH . H 5 HOH A 54 389 114 HOH HOH . H 5 HOH A 55 390 118 HOH HOH . H 5 HOH A 56 391 125 HOH HOH . H 5 HOH A 57 392 127 HOH HOH . H 5 HOH A 58 393 128 HOH HOH . H 5 HOH A 59 394 131 HOH HOH . H 5 HOH A 60 395 132 HOH HOH . H 5 HOH A 61 396 133 HOH HOH . H 5 HOH A 62 397 134 HOH HOH . H 5 HOH A 63 398 135 HOH HOH . H 5 HOH A 64 399 136 HOH HOH . H 5 HOH A 65 400 141 HOH HOH . H 5 HOH A 66 401 143 HOH HOH . H 5 HOH A 67 402 145 HOH HOH . H 5 HOH A 68 403 148 HOH HOH . H 5 HOH A 69 404 149 HOH HOH . H 5 HOH A 70 405 153 HOH HOH . H 5 HOH A 71 406 155 HOH HOH . H 5 HOH A 72 407 156 HOH HOH . H 5 HOH A 73 408 159 HOH HOH . H 5 HOH A 74 409 160 HOH HOH . H 5 HOH A 75 410 161 HOH HOH . H 5 HOH A 76 411 164 HOH HOH . H 5 HOH A 77 412 165 HOH HOH . H 5 HOH A 78 413 166 HOH HOH . H 5 HOH A 79 414 167 HOH HOH . H 5 HOH A 80 415 168 HOH HOH . H 5 HOH A 81 416 170 HOH HOH . H 5 HOH A 82 417 171 HOH HOH . I 5 HOH B 1 337 2 HOH HOH . I 5 HOH B 2 338 3 HOH HOH . I 5 HOH B 3 339 6 HOH HOH . I 5 HOH B 4 340 7 HOH HOH . I 5 HOH B 5 341 8 HOH HOH . I 5 HOH B 6 342 9 HOH HOH . I 5 HOH B 7 343 10 HOH HOH . I 5 HOH B 8 344 11 HOH HOH . I 5 HOH B 9 345 13 HOH HOH . I 5 HOH B 10 346 15 HOH HOH . I 5 HOH B 11 347 19 HOH HOH . I 5 HOH B 12 348 21 HOH HOH . I 5 HOH B 13 349 25 HOH HOH . I 5 HOH B 14 350 27 HOH HOH . I 5 HOH B 15 351 30 HOH HOH . I 5 HOH B 16 352 31 HOH HOH . I 5 HOH B 17 353 32 HOH HOH . I 5 HOH B 18 354 34 HOH HOH . I 5 HOH B 19 355 35 HOH HOH . I 5 HOH B 20 356 38 HOH HOH . I 5 HOH B 21 357 39 HOH HOH . I 5 HOH B 22 358 40 HOH HOH . I 5 HOH B 23 359 44 HOH HOH . I 5 HOH B 24 360 46 HOH HOH . I 5 HOH B 25 361 49 HOH HOH . I 5 HOH B 26 362 50 HOH HOH . I 5 HOH B 27 363 54 HOH HOH . I 5 HOH B 28 364 55 HOH HOH . I 5 HOH B 29 365 57 HOH HOH . I 5 HOH B 30 366 58 HOH HOH . I 5 HOH B 31 367 60 HOH HOH . I 5 HOH B 32 368 61 HOH HOH . I 5 HOH B 33 369 62 HOH HOH . I 5 HOH B 34 370 63 HOH HOH . I 5 HOH B 35 371 66 HOH HOH . I 5 HOH B 36 372 67 HOH HOH . I 5 HOH B 37 373 69 HOH HOH . I 5 HOH B 38 374 70 HOH HOH . I 5 HOH B 39 375 72 HOH HOH . I 5 HOH B 40 376 74 HOH HOH . I 5 HOH B 41 377 75 HOH HOH . I 5 HOH B 42 378 78 HOH HOH . I 5 HOH B 43 379 79 HOH HOH . I 5 HOH B 44 380 80 HOH HOH . I 5 HOH B 45 381 81 HOH HOH . I 5 HOH B 46 382 85 HOH HOH . I 5 HOH B 47 383 86 HOH HOH . I 5 HOH B 48 384 89 HOH HOH . I 5 HOH B 49 385 91 HOH HOH . I 5 HOH B 50 386 92 HOH HOH . I 5 HOH B 51 387 93 HOH HOH . I 5 HOH B 52 388 94 HOH HOH . I 5 HOH B 53 389 98 HOH HOH . I 5 HOH B 54 390 100 HOH HOH . I 5 HOH B 55 391 101 HOH HOH . I 5 HOH B 56 392 104 HOH HOH . I 5 HOH B 57 393 105 HOH HOH . I 5 HOH B 58 394 106 HOH HOH . I 5 HOH B 59 395 110 HOH HOH . I 5 HOH B 60 396 113 HOH HOH . I 5 HOH B 61 397 115 HOH HOH . I 5 HOH B 62 398 116 HOH HOH . I 5 HOH B 63 399 117 HOH HOH . I 5 HOH B 64 400 119 HOH HOH . I 5 HOH B 65 401 120 HOH HOH . I 5 HOH B 66 402 121 HOH HOH . I 5 HOH B 67 403 122 HOH HOH . I 5 HOH B 68 404 123 HOH HOH . I 5 HOH B 69 405 124 HOH HOH . I 5 HOH B 70 406 126 HOH HOH . I 5 HOH B 71 407 129 HOH HOH . I 5 HOH B 72 408 130 HOH HOH . I 5 HOH B 73 409 137 HOH HOH . I 5 HOH B 74 410 138 HOH HOH . I 5 HOH B 75 411 139 HOH HOH . I 5 HOH B 76 412 140 HOH HOH . I 5 HOH B 77 413 142 HOH HOH . I 5 HOH B 78 414 144 HOH HOH . I 5 HOH B 79 415 146 HOH HOH . I 5 HOH B 80 416 147 HOH HOH . I 5 HOH B 81 417 150 HOH HOH . I 5 HOH B 82 418 151 HOH HOH . I 5 HOH B 83 419 152 HOH HOH . I 5 HOH B 84 420 154 HOH HOH . I 5 HOH B 85 421 157 HOH HOH . I 5 HOH B 86 422 158 HOH HOH . I 5 HOH B 87 423 162 HOH HOH . I 5 HOH B 88 424 163 HOH HOH . I 5 HOH B 89 425 169 HOH HOH . I 5 HOH B 90 426 172 HOH HOH . I 5 HOH B 91 427 173 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MES . . . G 4 9.57 69.474 14.43 1 61.62 ? O1 MES 336 B 1 HETATM 2 C C2 MES . . . G 4 10.191 69.624 13.148 1 61.7 ? C2 MES 336 B 1 HETATM 3 C C3 MES . . . G 4 11.409 70.541 13.325 1 61.47 ? C3 MES 336 B 1 HETATM 4 N N4 MES . . . G 4 10.947 71.842 13.801 1 61.77 ? N4 MES 336 B 1 HETATM 5 C C5 MES . . . G 4 10.269 71.675 15.076 1 61.86 ? C5 MES 336 B 1 HETATM 6 C C6 MES . . . G 4 9.067 70.739 14.879 1 61.23 ? C6 MES 336 B 1 HETATM 7 C C7 MES . . . G 4 12.079 72.714 13.986 1 60.94 ? C7 MES 336 B 1 HETATM 8 C C8 MES . . . G 4 12.241 73.602 12.751 1 61.57 ? C8 MES 336 B 1 HETATM 9 S S MES . . . G 4 13.001 75.106 13.371 1 61.26 ? S MES 336 B 1 HETATM 10 O O1S MES . . . G 4 12.048 75.681 14.308 1 61.62 ? O1S MES 336 B 1 HETATM 11 O O2S MES . . . G 4 13.191 75.922 12.182 1 61.61 ? O2S MES 336 B 1 HETATM 12 O O3S MES . . . G 4 14.244 74.691 13.997 1 61.01 ? O3S MES 336 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #