data_2GNF # _model_server_result.job_id -lswerQ_LUM9vRmzThZPkw _model_server_result.datetime_utc '2024-10-13 02:23:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2gnf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 2GNF # _exptl.entry_id 2GNF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.336 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(R)-TRANS-4-(1-AMINOETHYL)-N-(4-PYRIDYL) CYCLOHEXANECARBOXAMIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2GNF _cell.length_a 72.222 _cell.length_b 76.287 _cell.length_c 80.71 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2GNF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TRP 196 A TRP 196 1_555 A N TPO 197 A TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale2 A C TPO 197 A TPO 197 1_555 A N LEU 198 A LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? covale ? covale3 A C VAL 337 A VAL 337 1_555 A N SEP 338 A SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C SEP 338 A SEP 338 1_555 A N ILE 339 A ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? # _chem_comp.formula 'C14 H21 N3 O' _chem_comp.formula_weight 247.336 _chem_comp.id Y27 _chem_comp.mon_nstd_flag . _chem_comp.name '(R)-TRANS-4-(1-AMINOETHYL)-N-(4-PYRIDYL) CYCLOHEXANECARBOXAMIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O23 C22 Y27 doub 415 n n C22 C31 Y27 sing 416 n n C22 N21 Y27 sing 417 n n C31 C36 Y27 sing 418 n n C31 C32 Y27 sing 419 n n C31 H31 Y27 sing 420 n n C36 C35 Y27 sing 421 n n C36 H361 Y27 sing 422 n n C36 H362 Y27 sing 423 n n C35 C34 Y27 sing 424 n n C35 H351 Y27 sing 425 n n C35 H352 Y27 sing 426 n n C34 C33 Y27 sing 427 n n C34 C41 Y27 sing 428 n n C34 H34 Y27 sing 429 n n C33 C32 Y27 sing 430 n n C33 H331 Y27 sing 431 n n C33 H332 Y27 sing 432 n n C32 H321 Y27 sing 433 n n C32 H322 Y27 sing 434 n n C41 C42 Y27 sing 435 n n C41 N43 Y27 sing 436 n n C41 H41 Y27 sing 437 n n C42 H421 Y27 sing 438 n n C42 H422 Y27 sing 439 n n C42 H423 Y27 sing 440 n n N43 H431 Y27 sing 441 n n N43 H432 Y27 sing 442 n n N21 C14 Y27 sing 443 n n N21 H21 Y27 sing 444 n n C14 C15 Y27 doub 445 n y C14 C13 Y27 sing 446 n y C15 C16 Y27 sing 447 n y C15 H15 Y27 sing 448 n n C16 N11 Y27 doub 449 n y C16 H16 Y27 sing 450 n n N11 C12 Y27 sing 451 n y C12 C13 Y27 doub 452 n y C12 H12 Y27 sing 453 n n C13 H13 Y27 sing 454 n n # _atom_sites.entry_id 2GNF _atom_sites.fract_transf_matrix[1][1] 0.013846 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013108 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01239 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 Y27 A 1 501 1 Y27 Y27 . D 4 HOH A 1 502 1 HOH HOH . D 4 HOH A 2 503 2 HOH HOH . D 4 HOH A 3 504 3 HOH HOH . D 4 HOH A 4 505 4 HOH HOH . D 4 HOH A 5 506 5 HOH HOH . D 4 HOH A 6 507 6 HOH HOH . D 4 HOH A 7 508 9 HOH HOH . D 4 HOH A 8 509 10 HOH HOH . D 4 HOH A 9 510 11 HOH HOH . D 4 HOH A 10 511 12 HOH HOH . D 4 HOH A 11 512 13 HOH HOH . D 4 HOH A 12 513 14 HOH HOH . D 4 HOH A 13 514 15 HOH HOH . D 4 HOH A 14 515 16 HOH HOH . D 4 HOH A 15 516 17 HOH HOH . D 4 HOH A 16 517 18 HOH HOH . D 4 HOH A 17 518 19 HOH HOH . D 4 HOH A 18 519 20 HOH HOH . D 4 HOH A 19 520 21 HOH HOH . D 4 HOH A 20 521 22 HOH HOH . D 4 HOH A 21 522 24 HOH HOH . D 4 HOH A 22 523 25 HOH HOH . D 4 HOH A 23 524 26 HOH HOH . D 4 HOH A 24 525 27 HOH HOH . D 4 HOH A 25 526 28 HOH HOH . D 4 HOH A 26 527 29 HOH HOH . D 4 HOH A 27 528 30 HOH HOH . D 4 HOH A 28 529 31 HOH HOH . D 4 HOH A 29 530 32 HOH HOH . D 4 HOH A 30 531 33 HOH HOH . D 4 HOH A 31 532 35 HOH HOH . D 4 HOH A 32 533 36 HOH HOH . D 4 HOH A 33 534 37 HOH HOH . D 4 HOH A 34 535 38 HOH HOH . D 4 HOH A 35 536 39 HOH HOH . D 4 HOH A 36 537 40 HOH HOH . D 4 HOH A 37 538 41 HOH HOH . D 4 HOH A 38 539 44 HOH HOH . D 4 HOH A 39 540 45 HOH HOH . D 4 HOH A 40 541 46 HOH HOH . D 4 HOH A 41 542 47 HOH HOH . D 4 HOH A 42 543 49 HOH HOH . D 4 HOH A 43 544 50 HOH HOH . D 4 HOH A 44 545 51 HOH HOH . D 4 HOH A 45 546 53 HOH HOH . D 4 HOH A 46 547 54 HOH HOH . D 4 HOH A 47 548 55 HOH HOH . D 4 HOH A 48 549 56 HOH HOH . D 4 HOH A 49 550 57 HOH HOH . D 4 HOH A 50 551 58 HOH HOH . D 4 HOH A 51 552 60 HOH HOH . D 4 HOH A 52 553 61 HOH HOH . D 4 HOH A 53 554 62 HOH HOH . D 4 HOH A 54 555 64 HOH HOH . D 4 HOH A 55 556 65 HOH HOH . D 4 HOH A 56 557 66 HOH HOH . D 4 HOH A 57 558 67 HOH HOH . D 4 HOH A 58 559 68 HOH HOH . D 4 HOH A 59 560 69 HOH HOH . D 4 HOH A 60 561 70 HOH HOH . D 4 HOH A 61 562 71 HOH HOH . D 4 HOH A 62 563 72 HOH HOH . D 4 HOH A 63 564 73 HOH HOH . D 4 HOH A 64 565 74 HOH HOH . D 4 HOH A 65 566 76 HOH HOH . D 4 HOH A 66 567 77 HOH HOH . D 4 HOH A 67 568 78 HOH HOH . D 4 HOH A 68 569 79 HOH HOH . D 4 HOH A 69 570 80 HOH HOH . D 4 HOH A 70 571 81 HOH HOH . D 4 HOH A 71 572 83 HOH HOH . D 4 HOH A 72 573 84 HOH HOH . D 4 HOH A 73 574 85 HOH HOH . D 4 HOH A 74 575 86 HOH HOH . D 4 HOH A 75 576 87 HOH HOH . D 4 HOH A 76 577 88 HOH HOH . D 4 HOH A 77 578 89 HOH HOH . D 4 HOH A 78 579 90 HOH HOH . D 4 HOH A 79 580 92 HOH HOH . D 4 HOH A 80 581 93 HOH HOH . D 4 HOH A 81 582 94 HOH HOH . D 4 HOH A 82 583 95 HOH HOH . D 4 HOH A 83 584 96 HOH HOH . D 4 HOH A 84 585 98 HOH HOH . D 4 HOH A 85 586 99 HOH HOH . D 4 HOH A 86 587 100 HOH HOH . D 4 HOH A 87 588 101 HOH HOH . D 4 HOH A 88 589 102 HOH HOH . D 4 HOH A 89 590 103 HOH HOH . D 4 HOH A 90 591 104 HOH HOH . D 4 HOH A 91 592 105 HOH HOH . D 4 HOH A 92 593 106 HOH HOH . D 4 HOH A 93 594 107 HOH HOH . D 4 HOH A 94 595 108 HOH HOH . D 4 HOH A 95 596 109 HOH HOH . D 4 HOH A 96 597 111 HOH HOH . D 4 HOH A 97 598 112 HOH HOH . D 4 HOH A 98 599 113 HOH HOH . D 4 HOH A 99 600 114 HOH HOH . D 4 HOH A 100 601 115 HOH HOH . D 4 HOH A 101 602 116 HOH HOH . D 4 HOH A 102 603 117 HOH HOH . D 4 HOH A 103 604 118 HOH HOH . D 4 HOH A 104 605 119 HOH HOH . D 4 HOH A 105 606 121 HOH HOH . D 4 HOH A 106 607 122 HOH HOH . D 4 HOH A 107 608 123 HOH HOH . D 4 HOH A 108 609 124 HOH HOH . D 4 HOH A 109 610 125 HOH HOH . D 4 HOH A 110 611 127 HOH HOH . D 4 HOH A 111 612 128 HOH HOH . D 4 HOH A 112 613 129 HOH HOH . D 4 HOH A 113 614 131 HOH HOH . D 4 HOH A 114 615 132 HOH HOH . D 4 HOH A 115 616 133 HOH HOH . D 4 HOH A 116 617 134 HOH HOH . D 4 HOH A 117 618 135 HOH HOH . D 4 HOH A 118 619 136 HOH HOH . D 4 HOH A 119 620 137 HOH HOH . D 4 HOH A 120 621 138 HOH HOH . D 4 HOH A 121 622 139 HOH HOH . D 4 HOH A 122 623 140 HOH HOH . D 4 HOH A 123 624 141 HOH HOH . D 4 HOH A 124 625 142 HOH HOH . D 4 HOH A 125 626 145 HOH HOH . D 4 HOH A 126 627 146 HOH HOH . D 4 HOH A 127 628 147 HOH HOH . D 4 HOH A 128 629 148 HOH HOH . D 4 HOH A 129 630 149 HOH HOH . D 4 HOH A 130 631 150 HOH HOH . D 4 HOH A 131 632 151 HOH HOH . D 4 HOH A 132 633 152 HOH HOH . D 4 HOH A 133 634 153 HOH HOH . D 4 HOH A 134 635 155 HOH HOH . D 4 HOH A 135 636 157 HOH HOH . D 4 HOH A 136 637 158 HOH HOH . D 4 HOH A 137 638 159 HOH HOH . D 4 HOH A 138 639 160 HOH HOH . D 4 HOH A 139 640 161 HOH HOH . D 4 HOH A 140 641 162 HOH HOH . D 4 HOH A 141 642 163 HOH HOH . E 4 HOH I 1 25 7 HOH HOH . E 4 HOH I 2 26 8 HOH HOH . E 4 HOH I 3 27 23 HOH HOH . E 4 HOH I 4 28 34 HOH HOH . E 4 HOH I 5 29 42 HOH HOH . E 4 HOH I 6 30 48 HOH HOH . E 4 HOH I 7 31 52 HOH HOH . E 4 HOH I 8 32 59 HOH HOH . E 4 HOH I 9 33 63 HOH HOH . E 4 HOH I 10 34 75 HOH HOH . E 4 HOH I 11 35 97 HOH HOH . E 4 HOH I 12 36 110 HOH HOH . E 4 HOH I 13 37 120 HOH HOH . E 4 HOH I 14 38 126 HOH HOH . E 4 HOH I 15 39 130 HOH HOH . E 4 HOH I 16 40 143 HOH HOH . E 4 HOH I 17 41 144 HOH HOH . E 4 HOH I 18 42 154 HOH HOH . E 4 HOH I 19 43 156 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O23 Y27 . . . C 3 7.517 10.06 41.926 1 42.92 ? O23 Y27 501 A 1 HETATM 2 C C22 Y27 . . . C 3 7.988 9.781 43.066 1 40.84 ? C22 Y27 501 A 1 HETATM 3 C C31 Y27 . . . C 3 9.402 9.323 43.305 1 40.88 ? C31 Y27 501 A 1 HETATM 4 C C36 Y27 . . . C 3 9.604 7.999 42.554 1 41.09 ? C36 Y27 501 A 1 HETATM 5 C C35 Y27 . . . C 3 11.061 7.485 42.613 1 39.8 ? C35 Y27 501 A 1 HETATM 6 C C34 Y27 . . . C 3 12.044 8.572 42.127 1 37.81 ? C34 Y27 501 A 1 HETATM 7 C C33 Y27 . . . C 3 11.902 9.772 43.077 1 40.12 ? C33 Y27 501 A 1 HETATM 8 C C32 Y27 . . . C 3 10.462 10.37 42.907 1 43.57 ? C32 Y27 501 A 1 HETATM 9 C C41 Y27 . . . C 3 13.523 8.065 42.041 1 38.26 ? C41 Y27 501 A 1 HETATM 10 C C42 Y27 . . . C 3 13.964 7.406 43.356 1 38.29 ? C42 Y27 501 A 1 HETATM 11 N N43 Y27 . . . C 3 13.75 7.117 40.903 1 36.09 ? N43 Y27 501 A 1 HETATM 12 N N21 Y27 . . . C 3 7.219 9.813 44.252 1 36.64 ? N21 Y27 501 A 1 HETATM 13 C C14 Y27 . . . C 3 5.777 9.974 44.275 1 37.94 ? C14 Y27 501 A 1 HETATM 14 C C15 Y27 . . . C 3 5.198 9.989 45.584 1 36.53 ? C15 Y27 501 A 1 HETATM 15 C C16 Y27 . . . C 3 3.82 10.131 45.667 1 35.93 ? C16 Y27 501 A 1 HETATM 16 N N11 Y27 . . . C 3 3.063 10.264 44.544 1 37.82 ? N11 Y27 501 A 1 HETATM 17 C C12 Y27 . . . C 3 3.564 10.262 43.294 1 37.17 ? C12 Y27 501 A 1 HETATM 18 C C13 Y27 . . . C 3 4.934 10.135 43.107 1 37.18 ? C13 Y27 501 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 18 #