data_2GNL
#
_model_server_result.job_id            Tdae1iyL_rkN0WsjZ-TkuQ 
_model_server_result.datetime_utc      '2024-10-13 02:29:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2gnl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    2GNL 
#
_exptl.entry_id    2GNL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              319.422 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (S)-2-METHYL-1-[(4-METHYL-5-ISOQUINOLINE)SULFONYL]-HOMOPIPERAZINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2GNL 
_cell.length_a            73.02 
_cell.length_b            74.746 
_cell.length_c            80.184 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2GNL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C TRP 196 A TRP 196 1_555 A N TPO 197 A TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale2 A C TPO 197 A TPO 197 1_555 A N LEU 198 A LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 A C VAL 337 A VAL 337 1_555 A N SEP 338 A SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale4 A C SEP 338 A SEP 338 1_555 A N ILE 339 A ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
#
_chem_comp.formula           'C16 H21 N3 O2 S' 
_chem_comp.formula_weight    319.422 
_chem_comp.id                H52 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (S)-2-METHYL-1-[(4-METHYL-5-ISOQUINOLINE)SULFONYL]-HOMOPIPERAZINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 S5 H52 doub 129 n n 
S5 O2 H52 doub 130 n n 
S5 N21 H52 sing 131 n n 
S5 C5 H52 sing 132 n n 
N21 C22 H52 sing 133 n n 
N21 C27 H52 sing 134 n n 
C22 C2M H52 sing 135 n n 
C22 C23 H52 sing 136 n n 
C22 H22 H52 sing 137 n n 
C2M H2M1 H52 sing 138 n n 
C2M H2M2 H52 sing 139 n n 
C2M H2M3 H52 sing 140 n n 
C23 N24 H52 sing 141 n n 
C23 H231 H52 sing 142 n n 
C23 H232 H52 sing 143 n n 
N24 C25 H52 sing 144 n n 
N24 H24 H52 sing 145 n n 
C25 C26 H52 sing 146 n n 
C25 H251 H52 sing 147 n n 
C25 H252 H52 sing 148 n n 
C26 C27 H52 sing 149 n n 
C26 H261 H52 sing 150 n n 
C26 H262 H52 sing 151 n n 
C27 H271 H52 sing 152 n n 
C27 H272 H52 sing 153 n n 
C5 C10 H52 doub 154 n y 
C5 C6 H52 sing 155 n y 
C10 C4 H52 sing 156 n y 
C10 C9 H52 sing 157 n y 
C4 CM H52 sing 158 n n 
C4 C3 H52 doub 159 n y 
CM HM1 H52 sing 160 n n 
CM HM2 H52 sing 161 n n 
CM HM3 H52 sing 162 n n 
C9 C8 H52 doub 163 n y 
C9 C1 H52 sing 164 n y 
C8 C7 H52 sing 165 n y 
C8 H8 H52 sing 166 n n 
C7 C6 H52 doub 167 n y 
C7 H7 H52 sing 168 n n 
C6 H6 H52 sing 169 n n 
C1 N2 H52 doub 170 n y 
C1 H1 H52 sing 171 n n 
N2 C3 H52 sing 172 n y 
C3 H3 H52 sing 173 n n 
#
_atom_sites.entry_id                     2GNL 
_atom_sites.fract_transf_matrix[1][1]    0.013695 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013379 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012471 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 H52 A 1 501 501 H52 H52 . 
D 4 HOH A 1 502 2 HOH HOH . 
D 4 HOH A 2 503 4 HOH HOH . 
D 4 HOH A 3 504 9 HOH HOH . 
D 4 HOH A 4 505 12 HOH HOH . 
D 4 HOH A 5 506 13 HOH HOH . 
D 4 HOH A 6 507 15 HOH HOH . 
D 4 HOH A 7 508 16 HOH HOH . 
D 4 HOH A 8 509 34 HOH HOH . 
D 4 HOH A 9 510 36 HOH HOH . 
D 4 HOH A 10 511 38 HOH HOH . 
D 4 HOH A 11 512 39 HOH HOH . 
D 4 HOH A 12 513 40 HOH HOH . 
D 4 HOH A 13 514 47 HOH HOH . 
D 4 HOH A 14 515 54 HOH HOH . 
D 4 HOH A 15 516 59 HOH HOH . 
D 4 HOH A 16 517 115 HOH HOH . 
D 4 HOH A 17 518 119 HOH HOH . 
D 4 HOH A 18 519 124 HOH HOH . 
D 4 HOH A 19 520 127 HOH HOH . 
D 4 HOH A 20 521 136 HOH HOH . 
D 4 HOH A 21 522 225 HOH HOH . 
D 4 HOH A 22 523 232 HOH HOH . 
D 4 HOH A 23 524 239 HOH HOH . 
D 4 HOH A 24 525 241 HOH HOH . 
D 4 HOH A 25 526 259 HOH HOH . 
D 4 HOH A 26 527 266 HOH HOH . 
D 4 HOH A 27 528 294 HOH HOH . 
D 4 HOH A 28 529 216 HOH HOH . 
D 4 HOH A 29 530 219 HOH HOH . 
D 4 HOH A 30 531 441 HOH HOH . 
D 4 HOH A 31 532 449 HOH HOH . 
D 4 HOH A 32 533 517 HOH HOH . 
D 4 HOH A 33 534 522 HOH HOH . 
D 4 HOH A 34 535 531 HOH HOH . 
D 4 HOH A 35 536 566 HOH HOH . 
D 4 HOH A 36 537 573 HOH HOH . 
D 4 HOH A 37 538 594 HOH HOH . 
D 4 HOH A 38 539 592 HOH HOH . 
D 4 HOH A 39 540 578 HOH HOH . 
D 4 HOH A 40 541 579 HOH HOH . 
D 4 HOH A 41 542 631 HOH HOH . 
D 4 HOH A 42 543 632 HOH HOH . 
D 4 HOH A 43 544 636 HOH HOH . 
D 4 HOH A 44 545 708 HOH HOH . 
D 4 HOH A 45 546 710 HOH HOH . 
D 4 HOH A 46 547 712 HOH HOH . 
D 4 HOH A 47 548 811 HOH HOH . 
D 4 HOH A 48 549 812 HOH HOH . 
D 4 HOH A 49 550 821 HOH HOH . 
D 4 HOH A 50 551 827 HOH HOH . 
D 4 HOH A 51 552 866 HOH HOH . 
D 4 HOH A 52 553 872 HOH HOH . 
D 4 HOH A 53 554 877 HOH HOH . 
D 4 HOH A 54 555 880 HOH HOH . 
D 4 HOH A 55 556 885 HOH HOH . 
D 4 HOH A 56 557 898 HOH HOH . 
D 4 HOH A 57 558 900 HOH HOH . 
D 4 HOH A 58 559 928 HOH HOH . 
D 4 HOH A 59 560 954 HOH HOH . 
D 4 HOH A 60 561 955 HOH HOH . 
D 4 HOH A 61 562 956 HOH HOH . 
D 4 HOH A 62 563 958 HOH HOH . 
D 4 HOH A 63 564 959 HOH HOH . 
D 4 HOH A 64 565 962 HOH HOH . 
D 4 HOH A 65 566 964 HOH HOH . 
D 4 HOH A 66 567 965 HOH HOH . 
D 4 HOH A 67 568 967 HOH HOH . 
D 4 HOH A 68 569 968 HOH HOH . 
D 4 HOH A 69 570 969 HOH HOH . 
D 4 HOH A 70 571 970 HOH HOH . 
D 4 HOH A 71 572 972 HOH HOH . 
D 4 HOH A 72 573 973 HOH HOH . 
D 4 HOH A 73 574 974 HOH HOH . 
D 4 HOH A 74 575 975 HOH HOH . 
D 4 HOH A 75 576 977 HOH HOH . 
D 4 HOH A 76 577 979 HOH HOH . 
D 4 HOH A 77 578 980 HOH HOH . 
D 4 HOH A 78 579 983 HOH HOH . 
D 4 HOH A 79 580 984 HOH HOH . 
D 4 HOH A 80 581 985 HOH HOH . 
D 4 HOH A 81 582 988 HOH HOH . 
D 4 HOH A 82 583 998 HOH HOH . 
D 4 HOH A 83 584 1005 HOH HOH . 
D 4 HOH A 84 585 1010 HOH HOH . 
D 4 HOH A 85 586 1011 HOH HOH . 
E 4 HOH I 1 25 1 HOH HOH . 
E 4 HOH I 2 26 5 HOH HOH . 
E 4 HOH I 3 27 19 HOH HOH . 
E 4 HOH I 4 28 101 HOH HOH . 
E 4 HOH I 5 29 507 HOH HOH . 
E 4 HOH I 6 30 617 HOH HOH . 
E 4 HOH I 7 31 857 HOH HOH . 
E 4 HOH I 8 32 957 HOH HOH . 
E 4 HOH I 9 33 960 HOH HOH . 
E 4 HOH I 10 34 961 HOH HOH . 
E 4 HOH I 11 35 963 HOH HOH . 
E 4 HOH I 12 36 1000 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 H52 . . . C 3 9.298 11.013 4.625 1 36.54 ? O1 H52 501 A 1 
HETATM 2 S S5 H52 . . . C 3 8.856 9.781 4.071 1 37.11 ? S5 H52 501 A 1 
HETATM 3 O O2 H52 . . . C 3 8.67 8.885 5.156 1 36.38 ? O2 H52 501 A 1 
HETATM 4 N N21 H52 . . . C 3 9.983 9.181 3.194 1 37.64 ? N21 H52 501 A 1 
HETATM 5 C C22 H52 . . . C 3 10.193 7.729 3.085 1 38.03 ? C22 H52 501 A 1 
HETATM 6 C C2M H52 . . . C 3 9.35 7.029 2.007 1 38.3 ? C2M H52 501 A 1 
HETATM 7 C C23 H52 . . . C 3 11.657 7.459 2.774 1 39.76 ? C23 H52 501 A 1 
HETATM 8 N N24 H52 . . . C 3 12.471 8.251 3.653 1 40.42 ? N24 H52 501 A 1 
HETATM 9 C C25 H52 . . . C 3 13.123 9.427 3.174 1 38.98 ? C25 H52 501 A 1 
HETATM 10 C C26 H52 . . . C 3 12.048 10.468 3.305 1 38.72 ? C26 H52 501 A 1 
HETATM 11 C C27 H52 . . . C 3 10.866 10.068 2.423 1 38.31 ? C27 H52 501 A 1 
HETATM 12 C C5 H52 . . . C 3 7.469 9.902 3.189 1 38.53 ? C5 H52 501 A 1 
HETATM 13 C C10 H52 . . . C 3 6.117 10.056 3.637 1 39.69 ? C10 H52 501 A 1 
HETATM 14 C C4 H52 . . . C 3 5.663 10.185 4.971 1 39.04 ? C4 H52 501 A 1 
HETATM 15 C CM H52 . . . C 3 6.53 10.186 6.195 1 38.51 ? CM H52 501 A 1 
HETATM 16 C C9 H52 . . . C 3 5.083 10.083 2.673 1 39.13 ? C9 H52 501 A 1 
HETATM 17 C C8 H52 . . . C 3 5.32 9.963 1.317 1 38.84 ? C8 H52 501 A 1 
HETATM 18 C C7 H52 . . . C 3 6.603 9.833 0.881 1 39.16 ? C7 H52 501 A 1 
HETATM 19 C C6 H52 . . . C 3 7.642 9.807 1.798 1 39.62 ? C6 H52 501 A 1 
HETATM 20 C C1 H52 . . . C 3 3.745 10.214 3.017 1 38.01 ? C1 H52 501 A 1 
HETATM 21 N N2 H52 . . . C 3 3.387 10.312 4.285 1 38.35 ? N2 H52 501 A 1 
HETATM 22 C C3 H52 . . . C 3 4.303 10.299 5.249 1 38.89 ? C3 H52 501 A 1 
#
_model_server_stats.io_time_ms              71 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           265 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           22 
#