data_2GNU
#
_model_server_result.job_id            cwpWiO9cZ5wRqddKimX6mg 
_model_server_result.datetime_utc      '2024-11-13 04:15:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2gnu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1310}' 
#
_entry.id    2GNU 
#
_exptl.entry_id    2GNU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              229.402 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'LAURYL DIMETHYLAMINE-N-OXIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2GNU 
_cell.length_a            100.422 
_cell.length_b            100.422 
_cell.length_c            235.412 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2GNU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        94 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 42 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B NE2 HIS 153 L HIS 153 1_555 F MG BCL . L BCL 1283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? 
metalc ? metalc2 B NE2 HIS 173 L HIS 173 1_555 E MG BCL . L BCL 1282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc3 B NE2 HIS 190 L HIS 190 1_555 H FE FE2 . M FE2 1307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? 
metalc ? metalc4 B NE2 HIS 230 L HIS 230 1_555 H FE FE2 . M FE2 1307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc5 C NE2 HIS 181 M HIS 182 1_555 K MG BCL . M BCL 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? 
metalc ? metalc6 C NE2 HIS 201 M HIS 202 1_555 L MG BCL . M BCL 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc7 C NE2 HIS 218 M HIS 219 1_555 H FE FE2 . M FE2 1307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
metalc ? metalc8 C OE1 GLU 233 M GLU 234 1_555 H FE FE2 . M FE2 1307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? 
metalc ? metalc9 C OE2 GLU 233 M GLU 234 1_555 H FE FE2 . M FE2 1307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc10 C NE2 HIS 265 M HIS 266 1_555 H FE FE2 . M FE2 1307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
#
_chem_comp.formula           'C14 H31 N O' 
_chem_comp.formula_weight    229.402 
_chem_comp.id                LDA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'LAURYL DIMETHYLAMINE-N-OXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 O1 LDA sing 722 n n 
N1 CM1 LDA sing 723 n n 
N1 CM2 LDA sing 724 n n 
N1 C1 LDA sing 725 n n 
CM1 HM11 LDA sing 726 n n 
CM1 HM12 LDA sing 727 n n 
CM1 HM13 LDA sing 728 n n 
CM2 HM21 LDA sing 729 n n 
CM2 HM22 LDA sing 730 n n 
CM2 HM23 LDA sing 731 n n 
C1 C2 LDA sing 732 n n 
C1 H11 LDA sing 733 n n 
C1 H12 LDA sing 734 n n 
C2 C3 LDA sing 735 n n 
C2 H21 LDA sing 736 n n 
C2 H22 LDA sing 737 n n 
C3 C4 LDA sing 738 n n 
C3 H31 LDA sing 739 n n 
C3 H32 LDA sing 740 n n 
C4 C5 LDA sing 741 n n 
C4 H41 LDA sing 742 n n 
C4 H42 LDA sing 743 n n 
C5 C6 LDA sing 744 n n 
C5 H51 LDA sing 745 n n 
C5 H52 LDA sing 746 n n 
C6 C7 LDA sing 747 n n 
C6 H61 LDA sing 748 n n 
C6 H62 LDA sing 749 n n 
C7 C8 LDA sing 750 n n 
C7 H71 LDA sing 751 n n 
C7 H72 LDA sing 752 n n 
C8 C9 LDA sing 753 n n 
C8 H81 LDA sing 754 n n 
C8 H82 LDA sing 755 n n 
C9 C10 LDA sing 756 n n 
C9 H91 LDA sing 757 n n 
C9 H92 LDA sing 758 n n 
C10 C11 LDA sing 759 n n 
C10 H101 LDA sing 760 n n 
C10 H102 LDA sing 761 n n 
C11 C12 LDA sing 762 n n 
C11 H111 LDA sing 763 n n 
C11 H112 LDA sing 764 n n 
C12 H121 LDA sing 765 n n 
C12 H122 LDA sing 766 n n 
C12 H123 LDA sing 767 n n 
#
_atom_sites.entry_id                     2GNU 
_atom_sites.fract_transf_matrix[1][1]    0.00996 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00996 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00425 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 LDA H 1 1310 1310 LDA LDA . 
E 5 BCL L 1 1282 1282 BCL BCL . 
F 5 BCL L 1 1283 1283 BCL BCL . 
G 6 U10 L 1 1306 1306 U10 U10 . 
H 7 FE2 M 1 1307 1307 FE2 FE2 . 
I 8 CL M 1 1308 1308 CL CL . 
J 9 BPH M 1 1284 1284 BPH BPH . 
K 5 BCL M 1 1302 1302 BCL BCL . 
L 5 BCL M 1 1303 1303 BCL BCL . 
M 9 BPH M 1 1304 1304 BPH BPH . 
N 6 U10 M 1 1305 1305 U10 U10 . 
O 10 CDL M 1 1309 1309 CDL CDL . 
P 11 HOH H 1 1311 7 HOH HOH . 
P 11 HOH H 2 1312 9 HOH HOH . 
P 11 HOH H 3 1313 11 HOH HOH . 
P 11 HOH H 4 1314 17 HOH HOH . 
P 11 HOH H 5 1315 23 HOH HOH . 
P 11 HOH H 6 1316 26 HOH HOH . 
P 11 HOH H 7 1317 28 HOH HOH . 
P 11 HOH H 8 1318 32 HOH HOH . 
P 11 HOH H 9 1319 37 HOH HOH . 
P 11 HOH H 10 1320 38 HOH HOH . 
P 11 HOH H 11 1321 39 HOH HOH . 
P 11 HOH H 12 1322 43 HOH HOH . 
P 11 HOH H 13 1323 51 HOH HOH . 
P 11 HOH H 14 1324 56 HOH HOH . 
P 11 HOH H 15 1325 57 HOH HOH . 
P 11 HOH H 16 1326 62 HOH HOH . 
P 11 HOH H 17 1327 64 HOH HOH . 
P 11 HOH H 18 1328 67 HOH HOH . 
P 11 HOH H 19 1329 68 HOH HOH . 
P 11 HOH H 20 1330 70 HOH HOH . 
P 11 HOH H 21 1331 72 HOH HOH . 
P 11 HOH H 22 1332 78 HOH HOH . 
P 11 HOH H 23 1333 80 HOH HOH . 
P 11 HOH H 24 1334 82 HOH HOH . 
P 11 HOH H 25 1335 83 HOH HOH . 
P 11 HOH H 26 1336 89 HOH HOH . 
P 11 HOH H 27 1337 93 HOH HOH . 
P 11 HOH H 28 1338 97 HOH HOH . 
P 11 HOH H 29 1339 341 HOH HOH . 
P 11 HOH H 30 1340 98 HOH HOH . 
P 11 HOH H 31 1341 99 HOH HOH . 
P 11 HOH H 32 1342 102 HOH HOH . 
P 11 HOH H 33 1343 107 HOH HOH . 
P 11 HOH H 34 1344 117 HOH HOH . 
P 11 HOH H 35 1345 124 HOH HOH . 
P 11 HOH H 36 1346 127 HOH HOH . 
P 11 HOH H 37 1347 143 HOH HOH . 
P 11 HOH H 38 1348 154 HOH HOH . 
P 11 HOH H 39 1349 155 HOH HOH . 
P 11 HOH H 40 1350 156 HOH HOH . 
P 11 HOH H 41 1351 162 HOH HOH . 
P 11 HOH H 42 1352 171 HOH HOH . 
P 11 HOH H 43 1353 173 HOH HOH . 
P 11 HOH H 44 1354 174 HOH HOH . 
P 11 HOH H 45 1355 194 HOH HOH . 
P 11 HOH H 46 1356 196 HOH HOH . 
P 11 HOH H 47 1357 199 HOH HOH . 
P 11 HOH H 48 1358 213 HOH HOH . 
P 11 HOH H 49 1359 233 HOH HOH . 
P 11 HOH H 50 1360 239 HOH HOH . 
P 11 HOH H 51 1361 249 HOH HOH . 
P 11 HOH H 52 1362 266 HOH HOH . 
P 11 HOH H 53 1363 279 HOH HOH . 
P 11 HOH H 54 1364 322 HOH HOH . 
P 11 HOH H 55 1365 323 HOH HOH . 
P 11 HOH H 56 1366 324 HOH HOH . 
P 11 HOH H 57 1367 326 HOH HOH . 
P 11 HOH H 58 1368 327 HOH HOH . 
P 11 HOH H 59 1369 332 HOH HOH . 
P 11 HOH H 60 1370 333 HOH HOH . 
P 11 HOH H 61 1371 336 HOH HOH . 
P 11 HOH H 62 1372 337 HOH HOH . 
P 11 HOH H 63 1373 338 HOH HOH . 
P 11 HOH H 64 1374 339 HOH HOH . 
Q 11 HOH L 1 1307 13 HOH HOH . 
Q 11 HOH L 2 1308 18 HOH HOH . 
Q 11 HOH L 3 1309 25 HOH HOH . 
Q 11 HOH L 4 1310 29 HOH HOH . 
Q 11 HOH L 5 1311 40 HOH HOH . 
Q 11 HOH L 6 1312 41 HOH HOH . 
Q 11 HOH L 7 1313 42 HOH HOH . 
Q 11 HOH L 8 1314 47 HOH HOH . 
Q 11 HOH L 9 1315 48 HOH HOH . 
Q 11 HOH L 10 1316 49 HOH HOH . 
Q 11 HOH L 11 1317 53 HOH HOH . 
Q 11 HOH L 12 1318 58 HOH HOH . 
Q 11 HOH L 13 1319 73 HOH HOH . 
Q 11 HOH L 14 1320 74 HOH HOH . 
Q 11 HOH L 15 1321 77 HOH HOH . 
Q 11 HOH L 16 1322 84 HOH HOH . 
Q 11 HOH L 17 1323 87 HOH HOH . 
Q 11 HOH L 18 1324 88 HOH HOH . 
Q 11 HOH L 19 1325 96 HOH HOH . 
Q 11 HOH L 20 1326 103 HOH HOH . 
Q 11 HOH L 21 1327 111 HOH HOH . 
Q 11 HOH L 22 1328 116 HOH HOH . 
Q 11 HOH L 23 1329 118 HOH HOH . 
Q 11 HOH L 24 1330 119 HOH HOH . 
Q 11 HOH L 25 1331 123 HOH HOH . 
Q 11 HOH L 26 1332 125 HOH HOH . 
Q 11 HOH L 27 1333 126 HOH HOH . 
Q 11 HOH L 28 1334 135 HOH HOH . 
Q 11 HOH L 29 1335 152 HOH HOH . 
Q 11 HOH L 30 1336 210 HOH HOH . 
Q 11 HOH L 31 1337 212 HOH HOH . 
Q 11 HOH L 32 1338 224 HOH HOH . 
Q 11 HOH L 33 1339 228 HOH HOH . 
Q 11 HOH L 34 1340 232 HOH HOH . 
Q 11 HOH L 35 1341 316 HOH HOH . 
Q 11 HOH L 36 1342 317 HOH HOH . 
Q 11 HOH L 37 1343 319 HOH HOH . 
Q 11 HOH L 38 1344 320 HOH HOH . 
Q 11 HOH L 39 1345 321 HOH HOH . 
Q 11 HOH L 40 1346 325 HOH HOH . 
Q 11 HOH L 41 1347 328 HOH HOH . 
Q 11 HOH L 42 1348 329 HOH HOH . 
Q 11 HOH L 43 1349 334 HOH HOH . 
R 11 HOH M 1 1310 4 HOH HOH . 
R 11 HOH M 2 1311 8 HOH HOH . 
R 11 HOH M 3 1312 10 HOH HOH . 
R 11 HOH M 4 1313 12 HOH HOH . 
R 11 HOH M 5 1314 14 HOH HOH . 
R 11 HOH M 6 1315 15 HOH HOH . 
R 11 HOH M 7 1316 19 HOH HOH . 
R 11 HOH M 8 1317 20 HOH HOH . 
R 11 HOH M 9 1318 21 HOH HOH . 
R 11 HOH M 10 1319 27 HOH HOH . 
R 11 HOH M 11 1320 36 HOH HOH . 
R 11 HOH M 12 1321 45 HOH HOH . 
R 11 HOH M 13 1322 50 HOH HOH . 
R 11 HOH M 14 1323 52 HOH HOH . 
R 11 HOH M 15 1324 59 HOH HOH . 
R 11 HOH M 16 1325 60 HOH HOH . 
R 11 HOH M 17 1326 63 HOH HOH . 
R 11 HOH M 18 1327 65 HOH HOH . 
R 11 HOH M 19 1328 66 HOH HOH . 
R 11 HOH M 20 1329 71 HOH HOH . 
R 11 HOH M 21 1330 81 HOH HOH . 
R 11 HOH M 22 1331 90 HOH HOH . 
R 11 HOH M 23 1332 92 HOH HOH . 
R 11 HOH M 24 1333 94 HOH HOH . 
R 11 HOH M 25 1334 104 HOH HOH . 
R 11 HOH M 26 1335 113 HOH HOH . 
R 11 HOH M 27 1336 114 HOH HOH . 
R 11 HOH M 28 1337 120 HOH HOH . 
R 11 HOH M 29 1338 122 HOH HOH . 
R 11 HOH M 30 1339 165 HOH HOH . 
R 11 HOH M 31 1340 166 HOH HOH . 
R 11 HOH M 32 1341 167 HOH HOH . 
R 11 HOH M 33 1342 169 HOH HOH . 
R 11 HOH M 34 1343 186 HOH HOH . 
R 11 HOH M 35 1344 192 HOH HOH . 
R 11 HOH M 36 1345 205 HOH HOH . 
R 11 HOH M 37 1346 222 HOH HOH . 
R 11 HOH M 38 1347 227 HOH HOH . 
R 11 HOH M 39 1348 273 HOH HOH . 
R 11 HOH M 40 1349 277 HOH HOH . 
R 11 HOH M 41 1350 293 HOH HOH . 
R 11 HOH M 42 1351 311 HOH HOH . 
R 11 HOH M 43 1352 315 HOH HOH . 
R 11 HOH M 44 1353 318 HOH HOH . 
R 11 HOH M 45 1354 330 HOH HOH . 
R 11 HOH M 46 1355 331 HOH HOH . 
R 11 HOH M 47 1356 335 HOH HOH . 
R 11 HOH M 48 1357 340 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 LDA . . . D 4 27.518 -44.629 -37.967 1 42.64 ? N1 LDA 1310 H 1 
HETATM 2 O O1 LDA . . . D 4 28.168 -43.585 -37.675 1 45.38 ? O1 LDA 1310 H 1 
HETATM 3 C CM1 LDA . . . D 4 27.158 -44.445 -39.362 1 39.88 ? CM1 LDA 1310 H 1 
HETATM 4 C CM2 LDA . . . D 4 28.365 -45.835 -37.962 1 41.91 ? CM2 LDA 1310 H 1 
HETATM 5 C C1 LDA . . . D 4 26.347 -44.817 -37.088 1 39.99 ? C1 LDA 1310 H 1 
HETATM 6 C C2 LDA . . . D 4 26.576 -44.215 -35.697 1 33.19 ? C2 LDA 1310 H 1 
HETATM 7 C C3 LDA . . . D 4 25.27 -44.181 -34.911 1 32.75 ? C3 LDA 1310 H 1 
HETATM 8 C C4 LDA . . . D 4 25.232 -43.211 -33.731 1 30.09 ? C4 LDA 1310 H 1 
HETATM 9 C C5 LDA . . . D 4 23.851 -43.168 -33.053 1 32.23 ? C5 LDA 1310 H 1 
HETATM 10 C C6 LDA . . . D 4 23.823 -42.651 -31.608 1 34.22 ? C6 LDA 1310 H 1 
HETATM 11 C C7 LDA . . . D 4 22.405 -42.199 -31.229 1 38.06 ? C7 LDA 1310 H 1 
HETATM 12 C C8 LDA . . . D 4 22.331 -41.511 -29.859 1 37.84 ? C8 LDA 1310 H 1 
HETATM 13 C C9 LDA . . . D 4 21.731 -40.107 -29.968 1 40.73 ? C9 LDA 1310 H 1 
HETATM 14 C C10 LDA . . . D 4 21.12 -39.58 -28.647 1 42.55 ? C10 LDA 1310 H 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#