data_2GO4 # _model_server_result.job_id KxDS5xdcQ1YKOm1NxfsQpQ _model_server_result.datetime_utc '2024-11-15 19:16:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2go4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":901}' # _entry.id 2GO4 # _exptl.entry_id 2GO4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 431.563 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,5-ANHYDRO-2-C-(CARBOXYMETHYL-N-HYDROXYAMIDE)-2-DEOXY-3-O-MYRISTOYL-D-GLUCITOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2GO4 _cell.length_a 100.729 _cell.length_b 100.729 _cell.length_c 121.299 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2GO4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS monomeric 1 author_and_software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,K 1 1 B,H,I,J,L 2 1 A,C,D,E,F,G,K 3 1 B,H,I,J,L 3 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_564 -x+y,-x+1,z-1/3 -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -50.3645 87.233873 -40.433 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A N GLY 2 A GLY 2 1_555 E ZN ZN . A ZN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc2 A NE2 HIS 58 A HIS 58 1_555 D ZN ZN . A ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc3 A NE2 HIS 74 A HIS 79 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc4 A OE2 GLU 120 A GLU 126 1_555 E ZN ZN . A ZN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc5 A OE1 GLU 120 A GLU 126 1_555 E ZN ZN . A ZN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc6 A NE2 HIS 188 A HIS 200 1_555 D ZN ZN . A ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc7 A NE2 HIS 226 A HIS 238 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc8 A OD1 ASP 230 A ASP 242 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc9 F CL CL . A CL 401 1_555 D ZN ZN . A ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc10 C ZN ZN . A ZN 601 1_555 G OYH TUX . A TUX 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc11 C ZN ZN . A ZN 601 1_555 G NXH TUX . A TUX 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? metalc ? metalc12 C ZN ZN . A ZN 601 1_555 G OXH TUX . A TUX 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc13 D ZN ZN . A ZN 604 1_555 K O HOH . A HOH 925 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc14 E ZN ZN . A ZN 605 1_555 B NE2 HIS 29 B HIS 29 3_564 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? metalc ? metalc15 E ZN ZN . A ZN 605 1_555 B OE1 GLU 90 B GLU 95 3_564 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc16 B NE2 HIS 58 B HIS 58 1_555 I ZN ZN . B ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc17 B NE2 HIS 74 B HIS 79 1_555 H ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc18 B NE2 HIS 188 B HIS 200 1_555 I ZN ZN . B ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc19 B NE2 HIS 226 B HIS 238 1_555 H ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc20 B OD1 ASP 230 B ASP 242 1_555 H ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc21 B OD2 ASP 230 B ASP 242 1_555 H ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc22 H ZN ZN . B ZN 602 1_555 J OYH TUX . B TUX 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc23 H ZN ZN . B ZN 602 1_555 J NXH TUX . B TUX 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? metalc ? metalc24 H ZN ZN . B ZN 602 1_555 J OXH TUX . B TUX 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.891 ? # _chem_comp.formula 'C22 H41 N O7' _chem_comp.formula_weight 431.563 _chem_comp.id TUX _chem_comp.mon_nstd_flag . _chem_comp.name 1,5-ANHYDRO-2-C-(CARBOXYMETHYL-N-HYDROXYAMIDE)-2-DEOXY-3-O-MYRISTOYL-D-GLUCITOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms TU-514 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3G C4G TUX sing 334 n n C3G C2G TUX sing 335 n n C3G O3G TUX sing 336 n n C3G H3G TUX sing 337 n n C4G C5G TUX sing 338 n n C4G O4G TUX sing 339 n n C4G H4G TUX sing 340 n n C5G O5G TUX sing 341 n n C5G C6G TUX sing 342 n n C5G H5G TUX sing 343 n n C2G C1G TUX sing 344 n n C2G CZH TUX sing 345 n n C2G H2G TUX sing 346 n n C1G O5G TUX sing 347 n n C1G H1G1 TUX sing 348 n n C1G H1G2 TUX sing 349 n n O3G C1A TUX sing 350 n n O1A C1A TUX doub 351 n n C1A C2A TUX sing 352 n n C2A C3A TUX sing 353 n n C2A H2A2 TUX sing 354 n n C2A H2A3 TUX sing 355 n n C3A C4A TUX sing 356 n n C3A H3A3 TUX sing 357 n n C3A H3A2 TUX sing 358 n n C4A C5A TUX sing 359 n n C4A H4A2 TUX sing 360 n n C4A H4A3 TUX sing 361 n n C5A C6A TUX sing 362 n n C5A H5A3 TUX sing 363 n n C5A H5A2 TUX sing 364 n n C6A C7A TUX sing 365 n n C6A H6A2 TUX sing 366 n n C6A H6A3 TUX sing 367 n n C7A C8A TUX sing 368 n n C7A H7A3 TUX sing 369 n n C7A H7A2 TUX sing 370 n n C8A C9A TUX sing 371 n n C8A H8A2 TUX sing 372 n n C8A H8A3 TUX sing 373 n n C9A CAA TUX sing 374 n n C9A H9A3 TUX sing 375 n n C9A H9A2 TUX sing 376 n n CAA CBA TUX sing 377 n n CAA HAA2 TUX sing 378 n n CAA HAA3 TUX sing 379 n n CBA CCA TUX sing 380 n n CBA HBA3 TUX sing 381 n n CBA HBA2 TUX sing 382 n n CCA CDA TUX sing 383 n n CCA HCA2 TUX sing 384 n n CCA HCA3 TUX sing 385 n n CDA CEA TUX sing 386 n n CDA HDA3 TUX sing 387 n n CDA HDA2 TUX sing 388 n n CEA HEA1 TUX sing 389 n n CEA HEA2 TUX sing 390 n n CEA HEA3 TUX sing 391 n n CZH CYH TUX sing 392 n n CZH HZH2 TUX sing 393 n n CZH HZH3 TUX sing 394 n n CYH OYH TUX doub 395 n n CYH NXH TUX sing 396 n n NXH OXH TUX sing 397 n n NXH HNH1 TUX sing 398 n n OXH HOH1 TUX sing 399 n n O4G HOG4 TUX sing 400 n n C6G O6G TUX sing 401 n n C6G H6G2 TUX sing 402 n n C6G H6G3 TUX sing 403 n n O6G HOG6 TUX sing 404 n n # _atom_sites.entry_id 2GO4 _atom_sites.fract_transf_matrix[1][1] 0.009928 _atom_sites.fract_transf_matrix[1][2] 0.005732 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011463 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008244 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 601 601 ZN ZN2 . D 2 ZN A 1 604 604 ZN ZN2 . E 2 ZN A 1 605 605 ZN ZN2 . F 3 CL A 1 401 401 CL CL1 . G 4 TUX A 1 901 901 TUX TU5 . H 2 ZN B 1 602 602 ZN ZN2 . I 2 ZN B 1 603 603 ZN ZN2 . J 4 TUX B 1 902 902 TUX TU5 . K 5 HOH A 1 902 1 HOH WAT . K 5 HOH A 2 903 3 HOH WAT . K 5 HOH A 3 904 4 HOH WAT . K 5 HOH A 4 905 6 HOH WAT . K 5 HOH A 5 906 8 HOH WAT . K 5 HOH A 6 907 10 HOH WAT . K 5 HOH A 7 908 11 HOH WAT . K 5 HOH A 8 909 14 HOH WAT . K 5 HOH A 9 910 15 HOH WAT . K 5 HOH A 10 911 16 HOH WAT . K 5 HOH A 11 912 17 HOH WAT . K 5 HOH A 12 913 19 HOH WAT . K 5 HOH A 13 914 22 HOH WAT . K 5 HOH A 14 915 23 HOH WAT . K 5 HOH A 15 916 24 HOH WAT . K 5 HOH A 16 917 25 HOH WAT . K 5 HOH A 17 918 27 HOH WAT . K 5 HOH A 18 919 30 HOH WAT . K 5 HOH A 19 920 31 HOH WAT . K 5 HOH A 20 921 32 HOH WAT . K 5 HOH A 21 922 35 HOH WAT . K 5 HOH A 22 923 36 HOH WAT . K 5 HOH A 23 924 40 HOH WAT . K 5 HOH A 24 925 42 HOH WAT . K 5 HOH A 25 926 44 HOH WAT . K 5 HOH A 26 927 45 HOH WAT . K 5 HOH A 27 928 46 HOH WAT . K 5 HOH A 28 929 47 HOH WAT . K 5 HOH A 29 930 48 HOH WAT . K 5 HOH A 30 931 49 HOH WAT . K 5 HOH A 31 932 50 HOH WAT . K 5 HOH A 32 933 51 HOH WAT . K 5 HOH A 33 934 53 HOH WAT . K 5 HOH A 34 935 55 HOH WAT . K 5 HOH A 35 936 56 HOH WAT . K 5 HOH A 36 937 61 HOH WAT . K 5 HOH A 37 938 62 HOH WAT . K 5 HOH A 38 939 63 HOH WAT . L 5 HOH B 1 903 2 HOH WAT . L 5 HOH B 2 904 5 HOH WAT . L 5 HOH B 3 905 9 HOH WAT . L 5 HOH B 4 906 12 HOH WAT . L 5 HOH B 5 907 13 HOH WAT . L 5 HOH B 6 908 18 HOH WAT . L 5 HOH B 7 909 20 HOH WAT . L 5 HOH B 8 910 26 HOH WAT . L 5 HOH B 9 911 28 HOH WAT . L 5 HOH B 10 912 29 HOH WAT . L 5 HOH B 11 913 33 HOH WAT . L 5 HOH B 12 914 38 HOH WAT . L 5 HOH B 13 915 41 HOH WAT . L 5 HOH B 14 916 43 HOH WAT . L 5 HOH B 15 917 52 HOH WAT . L 5 HOH B 16 918 54 HOH WAT . L 5 HOH B 17 919 57 HOH WAT . L 5 HOH B 18 920 60 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C3G TUX . . . G 4 -30.935 77.291 5.303 1 64.42 ? C3G TUX 901 A 1 HETATM 2 C C4G TUX . . . G 4 -32.071 78.31 5.2 1 66.87 ? C4G TUX 901 A 1 HETATM 3 C C5G TUX . . . G 4 -32.115 78.892 3.784 1 68.57 ? C5G TUX 901 A 1 HETATM 4 C C2G TUX . . . G 4 -29.616 77.954 4.897 1 63.55 ? C2G TUX 901 A 1 HETATM 5 C C1G TUX . . . G 4 -29.758 78.592 3.511 1 64.58 ? C1G TUX 901 A 1 HETATM 6 O O5G TUX . . . G 4 -30.855 79.523 3.495 1 67.08 ? O5G TUX 901 A 1 HETATM 7 O O3G TUX . . . G 4 -30.827 76.815 6.652 1 63.52 ? O3G TUX 901 A 1 HETATM 8 O O1A TUX . . . G 4 -31.235 74.768 5.79 1 62.92 ? O1A TUX 901 A 1 HETATM 9 C C1A TUX . . . G 4 -30.976 75.467 6.769 1 62.98 ? C1A TUX 901 A 1 HETATM 10 C C2A TUX . . . G 4 -30.858 74.855 8.167 1 62.42 ? C2A TUX 901 A 1 HETATM 11 C C3A TUX . . . G 4 -31.374 73.417 8.234 1 63.02 ? C3A TUX 901 A 1 HETATM 12 C C4A TUX . . . G 4 -31.92 73.142 9.637 1 65.24 ? C4A TUX 901 A 1 HETATM 13 C C5A TUX . . . G 4 -32.329 71.679 9.815 1 67.29 ? C5A TUX 901 A 1 HETATM 14 C C6A TUX . . . G 4 -33.333 71.489 10.956 1 71.01 ? C6A TUX 901 A 1 HETATM 15 C C7A TUX . . . G 4 -32.843 71.998 12.315 1 72.83 ? C7A TUX 901 A 1 HETATM 16 C C8A TUX . . . G 4 -33.844 71.597 13.401 1 76.54 ? C8A TUX 901 A 1 HETATM 17 C C9A TUX . . . G 4 -33.493 72.181 14.771 1 78.51 ? C9A TUX 901 A 1 HETATM 18 C CAA TUX . . . G 4 -34.397 71.577 15.849 1 80.56 ? CAA TUX 901 A 1 HETATM 19 C CBA TUX . . . G 4 -34.157 72.195 17.23 1 82.93 ? CBA TUX 901 A 1 HETATM 20 C CCA TUX . . . G 4 -34.865 73.54 17.43 1 83.32 ? CCA TUX 901 A 1 HETATM 21 C CDA TUX . . . G 4 -36.366 73.408 17.711 1 82.02 ? CDA TUX 901 A 1 HETATM 22 C CEA TUX . . . G 4 -37.164 72.91 16.503 1 80.94 ? CEA TUX 901 A 1 HETATM 23 C CZH TUX . . . G 4 -28.487 76.921 4.933 1 60.52 ? CZH TUX 901 A 1 HETATM 24 C CYH TUX . . . G 4 -27.101 77.564 4.851 1 56.93 ? CYH TUX 901 A 1 HETATM 25 O OYH TUX . . . G 4 -26.547 78 5.858 1 55.54 ? OYH TUX 901 A 1 HETATM 26 N NXH TUX . . . G 4 -26.568 77.597 3.634 1 54.05 ? NXH TUX 901 A 1 HETATM 27 O OXH TUX . . . G 4 -25.321 78.111 3.467 1 54.31 ? OXH TUX 901 A 1 HETATM 28 O O4G TUX . . . G 4 -33.313 77.666 5.496 1 66.49 ? O4G TUX 901 A 1 HETATM 29 C C6G TUX . . . G 4 -33.264 79.899 3.681 1 69.74 ? C6G TUX 901 A 1 HETATM 30 O O6G TUX . . . G 4 -33.417 80.335 2.328 1 70.43 ? O6G TUX 901 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 30 #