data_2GO4
#
_model_server_result.job_id            PoYzJImHkpESR9cJYB6z9A 
_model_server_result.datetime_utc      '2024-11-15 19:48:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2go4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":902}' 
#
_entry.id    2GO4 
#
_exptl.entry_id    2GO4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              431.563 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,5-ANHYDRO-2-C-(CARBOXYMETHYL-N-HYDROXYAMIDE)-2-DEOXY-3-O-MYRISTOYL-D-GLUCITOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2GO4 
_cell.length_a            100.729 
_cell.length_b            100.729 
_cell.length_c            121.299 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2GO4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS monomeric 1 author_and_software_defined_assembly 1 
PQS monomeric 1 author_and_software_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,K 1 1 
B,H,I,J,L 2 1 
A,C,D,E,F,G,K 3 1 
B,H,I,J,L 3 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_564 -x+y,-x+1,z-1/3 -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -50.3645 87.233873 -40.433 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A N GLY 2 A GLY 2 1_555 E ZN ZN . A ZN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc2 A NE2 HIS 58 A HIS 58 1_555 D ZN ZN . A ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? 
metalc ? metalc3 A NE2 HIS 74 A HIS 79 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? 
metalc ? metalc4 A OE2 GLU 120 A GLU 126 1_555 E ZN ZN . A ZN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? 
metalc ? metalc5 A OE1 GLU 120 A GLU 126 1_555 E ZN ZN . A ZN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
metalc ? metalc6 A NE2 HIS 188 A HIS 200 1_555 D ZN ZN . A ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
metalc ? metalc7 A NE2 HIS 226 A HIS 238 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
metalc ? metalc8 A OD1 ASP 230 A ASP 242 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? 
metalc ? metalc9 F CL CL . A CL 401 1_555 D ZN ZN . A ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? 
metalc ? metalc10 C ZN ZN . A ZN 601 1_555 G OYH TUX . A TUX 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
metalc ? metalc11 C ZN ZN . A ZN 601 1_555 G NXH TUX . A TUX 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? 
metalc ? metalc12 C ZN ZN . A ZN 601 1_555 G OXH TUX . A TUX 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? 
metalc ? metalc13 D ZN ZN . A ZN 604 1_555 K O HOH . A HOH 925 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? 
metalc ? metalc14 E ZN ZN . A ZN 605 1_555 B NE2 HIS 29 B HIS 29 3_564 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? 
metalc ? metalc15 E ZN ZN . A ZN 605 1_555 B OE1 GLU 90 B GLU 95 3_564 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
metalc ? metalc16 B NE2 HIS 58 B HIS 58 1_555 I ZN ZN . B ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? 
metalc ? metalc17 B NE2 HIS 74 B HIS 79 1_555 H ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
metalc ? metalc18 B NE2 HIS 188 B HIS 200 1_555 I ZN ZN . B ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? 
metalc ? metalc19 B NE2 HIS 226 B HIS 238 1_555 H ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? 
metalc ? metalc20 B OD1 ASP 230 B ASP 242 1_555 H ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? 
metalc ? metalc21 B OD2 ASP 230 B ASP 242 1_555 H ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? 
metalc ? metalc22 H ZN ZN . B ZN 602 1_555 J OYH TUX . B TUX 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? 
metalc ? metalc23 H ZN ZN . B ZN 602 1_555 J NXH TUX . B TUX 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? 
metalc ? metalc24 H ZN ZN . B ZN 602 1_555 J OXH TUX . B TUX 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.891 ? 
#
_chem_comp.formula           'C22 H41 N O7' 
_chem_comp.formula_weight    431.563 
_chem_comp.id                TUX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,5-ANHYDRO-2-C-(CARBOXYMETHYL-N-HYDROXYAMIDE)-2-DEOXY-3-O-MYRISTOYL-D-GLUCITOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     TU-514 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C3G C4G TUX sing 334 n n 
C3G C2G TUX sing 335 n n 
C3G O3G TUX sing 336 n n 
C3G H3G TUX sing 337 n n 
C4G C5G TUX sing 338 n n 
C4G O4G TUX sing 339 n n 
C4G H4G TUX sing 340 n n 
C5G O5G TUX sing 341 n n 
C5G C6G TUX sing 342 n n 
C5G H5G TUX sing 343 n n 
C2G C1G TUX sing 344 n n 
C2G CZH TUX sing 345 n n 
C2G H2G TUX sing 346 n n 
C1G O5G TUX sing 347 n n 
C1G H1G1 TUX sing 348 n n 
C1G H1G2 TUX sing 349 n n 
O3G C1A TUX sing 350 n n 
O1A C1A TUX doub 351 n n 
C1A C2A TUX sing 352 n n 
C2A C3A TUX sing 353 n n 
C2A H2A2 TUX sing 354 n n 
C2A H2A3 TUX sing 355 n n 
C3A C4A TUX sing 356 n n 
C3A H3A3 TUX sing 357 n n 
C3A H3A2 TUX sing 358 n n 
C4A C5A TUX sing 359 n n 
C4A H4A2 TUX sing 360 n n 
C4A H4A3 TUX sing 361 n n 
C5A C6A TUX sing 362 n n 
C5A H5A3 TUX sing 363 n n 
C5A H5A2 TUX sing 364 n n 
C6A C7A TUX sing 365 n n 
C6A H6A2 TUX sing 366 n n 
C6A H6A3 TUX sing 367 n n 
C7A C8A TUX sing 368 n n 
C7A H7A3 TUX sing 369 n n 
C7A H7A2 TUX sing 370 n n 
C8A C9A TUX sing 371 n n 
C8A H8A2 TUX sing 372 n n 
C8A H8A3 TUX sing 373 n n 
C9A CAA TUX sing 374 n n 
C9A H9A3 TUX sing 375 n n 
C9A H9A2 TUX sing 376 n n 
CAA CBA TUX sing 377 n n 
CAA HAA2 TUX sing 378 n n 
CAA HAA3 TUX sing 379 n n 
CBA CCA TUX sing 380 n n 
CBA HBA3 TUX sing 381 n n 
CBA HBA2 TUX sing 382 n n 
CCA CDA TUX sing 383 n n 
CCA HCA2 TUX sing 384 n n 
CCA HCA3 TUX sing 385 n n 
CDA CEA TUX sing 386 n n 
CDA HDA3 TUX sing 387 n n 
CDA HDA2 TUX sing 388 n n 
CEA HEA1 TUX sing 389 n n 
CEA HEA2 TUX sing 390 n n 
CEA HEA3 TUX sing 391 n n 
CZH CYH TUX sing 392 n n 
CZH HZH2 TUX sing 393 n n 
CZH HZH3 TUX sing 394 n n 
CYH OYH TUX doub 395 n n 
CYH NXH TUX sing 396 n n 
NXH OXH TUX sing 397 n n 
NXH HNH1 TUX sing 398 n n 
OXH HOH1 TUX sing 399 n n 
O4G HOG4 TUX sing 400 n n 
C6G O6G TUX sing 401 n n 
C6G H6G2 TUX sing 402 n n 
C6G H6G3 TUX sing 403 n n 
O6G HOG6 TUX sing 404 n n 
#
_atom_sites.entry_id                     2GO4 
_atom_sites.fract_transf_matrix[1][1]    0.009928 
_atom_sites.fract_transf_matrix[1][2]    0.005732 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011463 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008244 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 601 601 ZN ZN2 . 
D 2 ZN A 1 604 604 ZN ZN2 . 
E 2 ZN A 1 605 605 ZN ZN2 . 
F 3 CL A 1 401 401 CL CL1 . 
G 4 TUX A 1 901 901 TUX TU5 . 
H 2 ZN B 1 602 602 ZN ZN2 . 
I 2 ZN B 1 603 603 ZN ZN2 . 
J 4 TUX B 1 902 902 TUX TU5 . 
K 5 HOH A 1 902 1 HOH WAT . 
K 5 HOH A 2 903 3 HOH WAT . 
K 5 HOH A 3 904 4 HOH WAT . 
K 5 HOH A 4 905 6 HOH WAT . 
K 5 HOH A 5 906 8 HOH WAT . 
K 5 HOH A 6 907 10 HOH WAT . 
K 5 HOH A 7 908 11 HOH WAT . 
K 5 HOH A 8 909 14 HOH WAT . 
K 5 HOH A 9 910 15 HOH WAT . 
K 5 HOH A 10 911 16 HOH WAT . 
K 5 HOH A 11 912 17 HOH WAT . 
K 5 HOH A 12 913 19 HOH WAT . 
K 5 HOH A 13 914 22 HOH WAT . 
K 5 HOH A 14 915 23 HOH WAT . 
K 5 HOH A 15 916 24 HOH WAT . 
K 5 HOH A 16 917 25 HOH WAT . 
K 5 HOH A 17 918 27 HOH WAT . 
K 5 HOH A 18 919 30 HOH WAT . 
K 5 HOH A 19 920 31 HOH WAT . 
K 5 HOH A 20 921 32 HOH WAT . 
K 5 HOH A 21 922 35 HOH WAT . 
K 5 HOH A 22 923 36 HOH WAT . 
K 5 HOH A 23 924 40 HOH WAT . 
K 5 HOH A 24 925 42 HOH WAT . 
K 5 HOH A 25 926 44 HOH WAT . 
K 5 HOH A 26 927 45 HOH WAT . 
K 5 HOH A 27 928 46 HOH WAT . 
K 5 HOH A 28 929 47 HOH WAT . 
K 5 HOH A 29 930 48 HOH WAT . 
K 5 HOH A 30 931 49 HOH WAT . 
K 5 HOH A 31 932 50 HOH WAT . 
K 5 HOH A 32 933 51 HOH WAT . 
K 5 HOH A 33 934 53 HOH WAT . 
K 5 HOH A 34 935 55 HOH WAT . 
K 5 HOH A 35 936 56 HOH WAT . 
K 5 HOH A 36 937 61 HOH WAT . 
K 5 HOH A 37 938 62 HOH WAT . 
K 5 HOH A 38 939 63 HOH WAT . 
L 5 HOH B 1 903 2 HOH WAT . 
L 5 HOH B 2 904 5 HOH WAT . 
L 5 HOH B 3 905 9 HOH WAT . 
L 5 HOH B 4 906 12 HOH WAT . 
L 5 HOH B 5 907 13 HOH WAT . 
L 5 HOH B 6 908 18 HOH WAT . 
L 5 HOH B 7 909 20 HOH WAT . 
L 5 HOH B 8 910 26 HOH WAT . 
L 5 HOH B 9 911 28 HOH WAT . 
L 5 HOH B 10 912 29 HOH WAT . 
L 5 HOH B 11 913 33 HOH WAT . 
L 5 HOH B 12 914 38 HOH WAT . 
L 5 HOH B 13 915 41 HOH WAT . 
L 5 HOH B 14 916 43 HOH WAT . 
L 5 HOH B 15 917 52 HOH WAT . 
L 5 HOH B 16 918 54 HOH WAT . 
L 5 HOH B 17 919 57 HOH WAT . 
L 5 HOH B 18 920 60 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C3G TUX . . . J 4 -42.058 66.797 29.284 1 65.44 ? C3G TUX 902 B 1 
HETATM 2 C C4G TUX . . . J 4 -43.001 67.999 29.377 1 67.68 ? C4G TUX 902 B 1 
HETATM 3 C C5G TUX . . . J 4 -43.843 67.941 30.654 1 70.26 ? C5G TUX 902 B 1 
HETATM 4 C C2G TUX . . . J 4 -42.807 65.484 29.533 1 66.54 ? C2G TUX 902 B 1 
HETATM 5 C C1G TUX . . . J 4 -43.641 65.576 30.814 1 67.38 ? C1G TUX 902 B 1 
HETATM 6 O O5G TUX . . . J 4 -44.547 66.688 30.719 1 70.59 ? O5G TUX 902 B 1 
HETATM 7 O O3G TUX . . . J 4 -41.478 66.776 27.971 1 62.57 ? O3G TUX 902 B 1 
HETATM 8 O O1A TUX . . . J 4 -39.634 67.554 29 1 61.68 ? O1A TUX 902 B 1 
HETATM 9 C C1A TUX . . . J 4 -40.192 67.22 27.956 1 61.15 ? C1A TUX 902 B 1 
HETATM 10 C C2A TUX . . . J 4 -39.457 67.271 26.615 1 60.58 ? C2A TUX 902 B 1 
HETATM 11 C C3A TUX . . . J 4 -37.938 67.33 26.788 1 61.37 ? C3A TUX 902 B 1 
HETATM 12 C C4A TUX . . . J 4 -37.226 67.244 25.436 1 62.37 ? C4A TUX 902 B 1 
HETATM 13 C C5A TUX . . . J 4 -37.443 68.48 24.562 1 63.18 ? C5A TUX 902 B 1 
HETATM 14 C C6A TUX . . . J 4 -36.95 68.186 23.144 1 67.59 ? C6A TUX 902 B 1 
HETATM 15 C C7A TUX . . . J 4 -37.035 69.409 22.23 1 69.28 ? C7A TUX 902 B 1 
HETATM 16 C C8A TUX . . . J 4 -36.724 69 20.789 1 72.67 ? C8A TUX 902 B 1 
HETATM 17 C C9A TUX . . . J 4 -36.559 70.216 19.874 1 75.25 ? C9A TUX 902 B 1 
HETATM 18 C CAA TUX . . . J 4 -36.464 69.802 18.403 1 78.01 ? CAA TUX 902 B 1 
HETATM 19 C CBA TUX . . . J 4 -35.269 68.889 18.114 1 80.91 ? CBA TUX 902 B 1 
HETATM 20 C CCA TUX . . . J 4 -35.313 68.383 16.67 1 82.06 ? CCA TUX 902 B 1 
HETATM 21 C CDA TUX . . . J 4 -34.151 67.441 16.352 1 80.94 ? CDA TUX 902 B 1 
HETATM 22 C CEA TUX . . . J 4 -34.269 66.889 14.93 1 79.53 ? CEA TUX 902 B 1 
HETATM 23 C CZH TUX . . . J 4 -41.827 64.307 29.585 1 62.98 ? CZH TUX 902 B 1 
HETATM 24 C CYH TUX . . . J 4 -42.542 62.955 29.63 1 60.16 ? CYH TUX 902 B 1 
HETATM 25 O OYH TUX . . . J 4 -42.847 62.359 28.597 1 56.84 ? OYH TUX 902 B 1 
HETATM 26 N NXH TUX . . . J 4 -42.793 62.493 30.852 1 57.1 ? NXH TUX 902 B 1 
HETATM 27 O OXH TUX . . . J 4 -43.5 61.342 31.002 1 55.96 ? OXH TUX 902 B 1 
HETATM 28 O O4G TUX . . . J 4 -42.232 69.206 29.377 1 64.83 ? O4G TUX 902 B 1 
HETATM 29 C C6G TUX . . . J 4 -44.865 69.079 30.624 1 71.84 ? C6G TUX 902 B 1 
HETATM 30 O O6G TUX . . . J 4 -45.707 68.923 29.478 1 73.02 ? O6G TUX 902 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           337 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           30 
#