data_2GOY # _model_server_result.job_id Y8ColsZN9QSOu9IfitOX6w _model_server_result.datetime_utc '2025-03-04 06:34:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2goy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":301}' # _entry.id 2GOY # _exptl.entry_id 2GOY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.64 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90.1 _cell.angle_beta 102.57 _cell.angle_gamma 89.95 _cell.entry_id 2GOY _cell.length_a 60.027 _cell.length_b 102.788 _cell.length_c 139.374 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2GOY _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,M,N,U,V,W,X 1 1 E,F,G,H,O,P,Q,R,S,T,Y,Z,AA,BA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 L N N ? 2 M N N ? 2 O N N ? 2 P N N ? 2 R N N ? 2 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 139 A CYS 139 1_555 I FE2 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc2 A SG CYS 140 A CYS 140 1_555 I FE3 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc3 A SG CYS 228 A CYS 228 1_555 I FE4 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc4 A SG CYS 231 A CYS 231 1_555 I FE1 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc5 B SG CYS 139 B CYS 139 1_555 J FE2 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc6 B SG CYS 140 B CYS 140 1_555 J FE1 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc7 B SG CYS 228 B CYS 228 1_555 J FE3 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc8 B SG CYS 231 B CYS 231 1_555 J FE4 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc9 C SG CYS 139 C CYS 139 1_555 L FE2 SF4 . C SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc10 C SG CYS 140 C CYS 140 1_555 L FE3 SF4 . C SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc11 C SG CYS 228 C CYS 228 1_555 L FE4 SF4 . C SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc12 C SG CYS 231 C CYS 231 1_555 L FE1 SF4 . C SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc13 D SG CYS 139 D CYS 139 1_555 M FE2 SF4 . D SF4 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc14 D SG CYS 140 D CYS 140 1_555 M FE1 SF4 . D SF4 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc15 D SG CYS 228 D CYS 228 1_555 M FE3 SF4 . D SF4 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc16 D SG CYS 231 D CYS 231 1_555 M FE4 SF4 . D SF4 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc17 E SG CYS 139 E CYS 139 1_555 O FE2 SF4 . E SF4 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc18 E SG CYS 140 E CYS 140 1_555 O FE3 SF4 . E SF4 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc19 E SG CYS 228 E CYS 228 1_555 O FE4 SF4 . E SF4 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc20 E SG CYS 231 E CYS 231 1_555 O FE1 SF4 . E SF4 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc21 F SG CYS 139 F CYS 139 1_555 P FE2 SF4 . F SF4 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc22 F SG CYS 140 F CYS 140 1_555 P FE1 SF4 . F SF4 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc23 F SG CYS 228 F CYS 228 1_555 P FE3 SF4 . F SF4 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc24 F SG CYS 231 F CYS 231 1_555 P FE4 SF4 . F SF4 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc25 G SG CYS 139 G CYS 139 1_555 R FE2 SF4 . G SF4 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc26 G SG CYS 140 G CYS 140 1_555 R FE3 SF4 . G SF4 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc27 G SG CYS 228 G CYS 228 1_555 R FE4 SF4 . G SF4 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc28 G SG CYS 231 G CYS 231 1_555 R FE1 SF4 . G SF4 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc29 H SG CYS 139 H CYS 139 1_555 S FE2 SF4 . H SF4 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc30 H SG CYS 140 H CYS 140 1_555 S FE1 SF4 . H SF4 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc31 H SG CYS 228 H CYS 228 1_555 S FE3 SF4 . H SF4 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc32 H SG CYS 231 H CYS 231 1_555 S FE4 SF4 . H SF4 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 333 n n FE1 S3 SF4 sing 334 n n FE1 S4 SF4 sing 335 n n FE2 S1 SF4 sing 336 n n FE2 S3 SF4 sing 337 n n FE2 S4 SF4 sing 338 n n FE3 S1 SF4 sing 339 n n FE3 S2 SF4 sing 340 n n FE3 S4 SF4 sing 341 n n FE4 S1 SF4 sing 342 n n FE4 S2 SF4 sing 343 n n FE4 S3 SF4 sing 344 n n # _atom_sites.entry_id 2GOY _atom_sites.fract_transf_matrix[1][1] 0.01666 _atom_sites.fract_transf_matrix[1][2] -0.00001 _atom_sites.fract_transf_matrix[1][3] 0.00371 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00973 _atom_sites.fract_transf_matrix[2][3] 0.00001 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00735 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 SF4 A 1 301 301 SF4 FS4 . J 2 SF4 B 1 302 302 SF4 FS4 . K 3 ADX B 1 310 310 ADX ADX . L 2 SF4 C 1 303 303 SF4 FS4 . M 2 SF4 D 1 304 304 SF4 FS4 . N 3 ADX D 1 312 312 ADX ADX . O 2 SF4 E 1 305 305 SF4 FS4 . P 2 SF4 F 1 306 306 SF4 FS4 . Q 3 ADX F 1 314 314 ADX ADX . R 2 SF4 G 1 307 307 SF4 FS4 . S 2 SF4 H 1 308 308 SF4 FS4 . T 3 ADX H 1 316 316 ADX ADX . U 4 HOH A 1 302 1 HOH HOH . U 4 HOH A 2 303 2 HOH HOH . U 4 HOH A 3 304 3 HOH HOH . U 4 HOH A 4 305 4 HOH HOH . U 4 HOH A 5 306 5 HOH HOH . U 4 HOH A 6 307 7 HOH HOH . U 4 HOH A 7 308 8 HOH HOH . U 4 HOH A 8 309 9 HOH HOH . U 4 HOH A 9 310 17 HOH HOH . U 4 HOH A 10 311 18 HOH HOH . U 4 HOH A 11 312 27 HOH HOH . U 4 HOH A 12 313 28 HOH HOH . U 4 HOH A 13 314 29 HOH HOH . U 4 HOH A 14 315 111 HOH HOH . U 4 HOH A 15 316 126 HOH HOH . U 4 HOH A 16 317 127 HOH HOH . U 4 HOH A 17 318 128 HOH HOH . U 4 HOH A 18 319 129 HOH HOH . U 4 HOH A 19 320 132 HOH HOH . U 4 HOH A 20 321 143 HOH HOH . V 4 HOH B 1 311 22 HOH HOH . V 4 HOH B 2 312 55 HOH HOH . V 4 HOH B 3 313 56 HOH HOH . V 4 HOH B 4 314 57 HOH HOH . V 4 HOH B 5 315 58 HOH HOH . V 4 HOH B 6 316 59 HOH HOH . V 4 HOH B 7 317 60 HOH HOH . V 4 HOH B 8 318 144 HOH HOH . W 4 HOH C 1 304 6 HOH HOH . W 4 HOH C 2 305 10 HOH HOH . W 4 HOH C 3 306 11 HOH HOH . W 4 HOH C 4 307 12 HOH HOH . W 4 HOH C 5 308 13 HOH HOH . W 4 HOH C 6 309 14 HOH HOH . W 4 HOH C 7 310 15 HOH HOH . W 4 HOH C 8 311 16 HOH HOH . W 4 HOH C 9 312 19 HOH HOH . W 4 HOH C 10 313 20 HOH HOH . W 4 HOH C 11 314 21 HOH HOH . W 4 HOH C 12 315 23 HOH HOH . W 4 HOH C 13 316 24 HOH HOH . W 4 HOH C 14 317 25 HOH HOH . W 4 HOH C 15 318 26 HOH HOH . W 4 HOH C 16 319 30 HOH HOH . W 4 HOH C 17 320 112 HOH HOH . W 4 HOH C 18 321 123 HOH HOH . W 4 HOH C 19 322 124 HOH HOH . W 4 HOH C 20 323 125 HOH HOH . W 4 HOH C 21 324 130 HOH HOH . W 4 HOH C 22 325 131 HOH HOH . W 4 HOH C 23 326 133 HOH HOH . W 4 HOH C 24 327 134 HOH HOH . X 4 HOH D 1 313 61 HOH HOH . X 4 HOH D 2 314 62 HOH HOH . X 4 HOH D 3 315 63 HOH HOH . X 4 HOH D 4 316 64 HOH HOH . X 4 HOH D 5 317 65 HOH HOH . X 4 HOH D 6 318 70 HOH HOH . X 4 HOH D 7 319 71 HOH HOH . X 4 HOH D 8 320 72 HOH HOH . X 4 HOH D 9 321 73 HOH HOH . X 4 HOH D 10 322 74 HOH HOH . X 4 HOH D 11 323 75 HOH HOH . X 4 HOH D 12 324 135 HOH HOH . X 4 HOH D 13 325 136 HOH HOH . X 4 HOH D 14 326 145 HOH HOH . X 4 HOH D 15 327 146 HOH HOH . Y 4 HOH E 1 306 31 HOH HOH . Y 4 HOH E 2 307 32 HOH HOH . Y 4 HOH E 3 308 35 HOH HOH . Y 4 HOH E 4 309 36 HOH HOH . Y 4 HOH E 5 310 37 HOH HOH . Y 4 HOH E 6 311 38 HOH HOH . Y 4 HOH E 7 312 40 HOH HOH . Y 4 HOH E 8 313 41 HOH HOH . Y 4 HOH E 9 314 42 HOH HOH . Y 4 HOH E 10 315 43 HOH HOH . Y 4 HOH E 11 316 44 HOH HOH . Y 4 HOH E 12 317 53 HOH HOH . Y 4 HOH E 13 318 68 HOH HOH . Y 4 HOH E 14 319 69 HOH HOH . Y 4 HOH E 15 320 95 HOH HOH . Y 4 HOH E 16 321 96 HOH HOH . Y 4 HOH E 17 322 97 HOH HOH . Y 4 HOH E 18 323 100 HOH HOH . Y 4 HOH E 19 324 101 HOH HOH . Y 4 HOH E 20 325 102 HOH HOH . Y 4 HOH E 21 326 103 HOH HOH . Y 4 HOH E 22 327 106 HOH HOH . Y 4 HOH E 23 328 117 HOH HOH . Y 4 HOH E 24 329 118 HOH HOH . Y 4 HOH E 25 330 119 HOH HOH . Y 4 HOH E 26 331 140 HOH HOH . Y 4 HOH E 27 332 141 HOH HOH . Y 4 HOH E 28 333 149 HOH HOH . Y 4 HOH E 29 334 150 HOH HOH . Y 4 HOH E 30 335 151 HOH HOH . Z 4 HOH F 1 315 76 HOH HOH . Z 4 HOH F 2 316 77 HOH HOH . Z 4 HOH F 3 317 78 HOH HOH . Z 4 HOH F 4 318 79 HOH HOH . Z 4 HOH F 5 319 80 HOH HOH . Z 4 HOH F 6 320 81 HOH HOH . Z 4 HOH F 7 321 84 HOH HOH . Z 4 HOH F 8 322 85 HOH HOH . Z 4 HOH F 9 323 86 HOH HOH . Z 4 HOH F 10 324 87 HOH HOH . Z 4 HOH F 11 325 105 HOH HOH . Z 4 HOH F 12 326 116 HOH HOH . Z 4 HOH F 13 327 137 HOH HOH . Z 4 HOH F 14 328 147 HOH HOH . AA 4 HOH G 1 308 33 HOH HOH . AA 4 HOH G 2 309 34 HOH HOH . AA 4 HOH G 3 310 39 HOH HOH . AA 4 HOH G 4 311 45 HOH HOH . AA 4 HOH G 5 312 46 HOH HOH . AA 4 HOH G 6 313 47 HOH HOH . AA 4 HOH G 7 314 48 HOH HOH . AA 4 HOH G 8 315 49 HOH HOH . AA 4 HOH G 9 316 50 HOH HOH . AA 4 HOH G 10 317 51 HOH HOH . AA 4 HOH G 11 318 52 HOH HOH . AA 4 HOH G 12 319 54 HOH HOH . AA 4 HOH G 13 320 66 HOH HOH . AA 4 HOH G 14 321 67 HOH HOH . AA 4 HOH G 15 322 92 HOH HOH . AA 4 HOH G 16 323 93 HOH HOH . AA 4 HOH G 17 324 94 HOH HOH . AA 4 HOH G 18 325 98 HOH HOH . AA 4 HOH G 19 326 99 HOH HOH . AA 4 HOH G 20 327 104 HOH HOH . AA 4 HOH G 21 328 107 HOH HOH . AA 4 HOH G 22 329 108 HOH HOH . AA 4 HOH G 23 330 110 HOH HOH . AA 4 HOH G 24 331 120 HOH HOH . AA 4 HOH G 25 332 121 HOH HOH . AA 4 HOH G 26 333 122 HOH HOH . AA 4 HOH G 27 334 138 HOH HOH . AA 4 HOH G 28 335 139 HOH HOH . BA 4 HOH H 1 317 82 HOH HOH . BA 4 HOH H 2 318 83 HOH HOH . BA 4 HOH H 3 319 88 HOH HOH . BA 4 HOH H 4 320 89 HOH HOH . BA 4 HOH H 5 321 90 HOH HOH . BA 4 HOH H 6 322 91 HOH HOH . BA 4 HOH H 7 323 109 HOH HOH . BA 4 HOH H 8 324 113 HOH HOH . BA 4 HOH H 9 325 114 HOH HOH . BA 4 HOH H 10 326 115 HOH HOH . BA 4 HOH H 11 327 142 HOH HOH . BA 4 HOH H 12 328 148 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . I 2 31.363 58.031 17.408 1 21.44 ? FE1 SF4 301 A 1 HETATM 2 FE FE2 SF4 . . . I 2 30.457 57.156 14.965 1 21.2 ? FE2 SF4 301 A 1 HETATM 3 FE FE3 SF4 . . . I 2 31.388 59.652 15.227 1 24.14 ? FE3 SF4 301 A 1 HETATM 4 FE FE4 SF4 . . . I 2 29.002 59.004 16.37 1 21.08 ? FE4 SF4 301 A 1 HETATM 5 S S1 SF4 . . . I 2 29.549 59.128 14.181 1 20.05 ? S1 SF4 301 A 1 HETATM 6 S S2 SF4 . . . I 2 30.737 60.245 17.226 1 21.21 ? S2 SF4 301 A 1 HETATM 7 S S3 SF4 . . . I 2 29.482 56.804 16.869 1 22.29 ? S3 SF4 301 A 1 HETATM 8 S S4 SF4 . . . I 2 32.593 57.85 15.529 1 21.51 ? S4 SF4 301 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 8 #