data_2GP5 # _model_server_result.job_id RwsoDCdYfHXIumy4_MIRfA _model_server_result.datetime_utc '2024-11-24 21:50:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2gp5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 2GP5 # _exptl.entry_id 2GP5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 55.845 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2GP5 _cell.length_a 101.107 _cell.length_b 149.524 _cell.length_c 57.028 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2GP5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 187 A HIS 188 1_555 D FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc2 A OE1 GLU 189 A GLU 190 1_555 D FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc3 A SG CYS 233 A CYS 234 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc4 A NE2 HIS 239 A HIS 240 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc5 A NE2 HIS 275 A HIS 276 1_555 D FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc6 A SG CYS 305 A CYS 306 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc7 A SG CYS 307 A CYS 308 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc8 D FE FE2 . A FE2 402 1_555 E O2 AKG . A AKG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc9 D FE FE2 . A FE2 402 1_555 E O5 AKG . A AKG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc10 B NE2 HIS 187 B HIS 188 1_555 G FE FE2 . B FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc11 B OE1 GLU 189 B GLU 190 1_555 G FE FE2 . B FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc12 B SG CYS 233 B CYS 234 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc13 B NE2 HIS 239 B HIS 240 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc14 B NE2 HIS 275 B HIS 276 1_555 G FE FE2 . B FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc15 B SG CYS 305 B CYS 306 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc16 B SG CYS 307 B CYS 308 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? metalc ? metalc17 G FE FE2 . B FE2 402 1_555 H O2 AKG . B AKG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc18 G FE FE2 . B FE2 402 1_555 H O5 AKG . B AKG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? # _chem_comp.formula 'Fe 2' _chem_comp.formula_weight 55.845 _chem_comp.id FE2 _chem_comp.mon_nstd_flag . _chem_comp.name 'FE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2GP5 _atom_sites.fract_transf_matrix[1][1] 0.009891 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006688 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017535 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 401 1 ZN ZN . D 3 FE2 A 1 402 1 FE2 FE . E 4 AKG A 1 403 1 AKG AKG . F 2 ZN B 1 401 1 ZN ZN . G 3 FE2 B 1 402 1 FE2 FE . H 4 AKG B 1 403 1 AKG AKG . I 5 HOH A 1 501 1 HOH HOH . I 5 HOH A 2 502 2 HOH HOH . I 5 HOH A 3 503 5 HOH HOH . I 5 HOH A 4 504 6 HOH HOH . I 5 HOH A 5 505 8 HOH HOH . I 5 HOH A 6 506 10 HOH HOH . I 5 HOH A 7 507 12 HOH HOH . I 5 HOH A 8 508 13 HOH HOH . I 5 HOH A 9 509 15 HOH HOH . I 5 HOH A 10 510 17 HOH HOH . I 5 HOH A 11 511 19 HOH HOH . I 5 HOH A 12 512 20 HOH HOH . I 5 HOH A 13 513 21 HOH HOH . I 5 HOH A 14 514 23 HOH HOH . I 5 HOH A 15 515 25 HOH HOH . I 5 HOH A 16 516 27 HOH HOH . I 5 HOH A 17 517 28 HOH HOH . I 5 HOH A 18 518 29 HOH HOH . I 5 HOH A 19 519 30 HOH HOH . I 5 HOH A 20 520 34 HOH HOH . I 5 HOH A 21 521 35 HOH HOH . I 5 HOH A 22 522 38 HOH HOH . I 5 HOH A 23 523 39 HOH HOH . I 5 HOH A 24 524 40 HOH HOH . I 5 HOH A 25 525 44 HOH HOH . I 5 HOH A 26 526 47 HOH HOH . I 5 HOH A 27 527 49 HOH HOH . I 5 HOH A 28 528 51 HOH HOH . I 5 HOH A 29 529 52 HOH HOH . I 5 HOH A 30 530 58 HOH HOH . I 5 HOH A 31 531 60 HOH HOH . I 5 HOH A 32 532 61 HOH HOH . I 5 HOH A 33 533 63 HOH HOH . I 5 HOH A 34 534 66 HOH HOH . I 5 HOH A 35 535 69 HOH HOH . I 5 HOH A 36 536 74 HOH HOH . I 5 HOH A 37 537 75 HOH HOH . I 5 HOH A 38 538 76 HOH HOH . I 5 HOH A 39 539 77 HOH HOH . I 5 HOH A 40 540 81 HOH HOH . I 5 HOH A 41 541 86 HOH HOH . I 5 HOH A 42 542 87 HOH HOH . I 5 HOH A 43 543 92 HOH HOH . I 5 HOH A 44 544 93 HOH HOH . I 5 HOH A 45 545 94 HOH HOH . I 5 HOH A 46 546 95 HOH HOH . I 5 HOH A 47 547 96 HOH HOH . I 5 HOH A 48 548 97 HOH HOH . I 5 HOH A 49 549 98 HOH HOH . I 5 HOH A 50 550 99 HOH HOH . I 5 HOH A 51 551 102 HOH HOH . I 5 HOH A 52 552 106 HOH HOH . I 5 HOH A 53 553 109 HOH HOH . I 5 HOH A 54 554 110 HOH HOH . I 5 HOH A 55 555 113 HOH HOH . I 5 HOH A 56 556 114 HOH HOH . I 5 HOH A 57 557 116 HOH HOH . I 5 HOH A 58 558 117 HOH HOH . I 5 HOH A 59 559 118 HOH HOH . I 5 HOH A 60 560 119 HOH HOH . I 5 HOH A 61 561 120 HOH HOH . I 5 HOH A 62 562 121 HOH HOH . I 5 HOH A 63 563 122 HOH HOH . I 5 HOH A 64 564 125 HOH HOH . J 5 HOH B 1 501 3 HOH HOH . J 5 HOH B 2 502 4 HOH HOH . J 5 HOH B 3 503 7 HOH HOH . J 5 HOH B 4 504 9 HOH HOH . J 5 HOH B 5 505 11 HOH HOH . J 5 HOH B 6 506 14 HOH HOH . J 5 HOH B 7 507 16 HOH HOH . J 5 HOH B 8 508 18 HOH HOH . J 5 HOH B 9 509 22 HOH HOH . J 5 HOH B 10 510 24 HOH HOH . J 5 HOH B 11 511 26 HOH HOH . J 5 HOH B 12 512 31 HOH HOH . J 5 HOH B 13 513 32 HOH HOH . J 5 HOH B 14 514 33 HOH HOH . J 5 HOH B 15 515 36 HOH HOH . J 5 HOH B 16 516 37 HOH HOH . J 5 HOH B 17 517 41 HOH HOH . J 5 HOH B 18 518 42 HOH HOH . J 5 HOH B 19 519 43 HOH HOH . J 5 HOH B 20 520 45 HOH HOH . J 5 HOH B 21 521 46 HOH HOH . J 5 HOH B 22 522 48 HOH HOH . J 5 HOH B 23 523 50 HOH HOH . J 5 HOH B 24 524 53 HOH HOH . J 5 HOH B 25 525 54 HOH HOH . J 5 HOH B 26 526 55 HOH HOH . J 5 HOH B 27 527 56 HOH HOH . J 5 HOH B 28 528 57 HOH HOH . J 5 HOH B 29 529 59 HOH HOH . J 5 HOH B 30 530 62 HOH HOH . J 5 HOH B 31 531 64 HOH HOH . J 5 HOH B 32 532 65 HOH HOH . J 5 HOH B 33 533 67 HOH HOH . J 5 HOH B 34 534 68 HOH HOH . J 5 HOH B 35 535 70 HOH HOH . J 5 HOH B 36 536 71 HOH HOH . J 5 HOH B 37 537 72 HOH HOH . J 5 HOH B 38 538 73 HOH HOH . J 5 HOH B 39 539 78 HOH HOH . J 5 HOH B 40 540 79 HOH HOH . J 5 HOH B 41 541 80 HOH HOH . J 5 HOH B 42 542 82 HOH HOH . J 5 HOH B 43 543 83 HOH HOH . J 5 HOH B 44 544 84 HOH HOH . J 5 HOH B 45 545 85 HOH HOH . J 5 HOH B 46 546 88 HOH HOH . J 5 HOH B 47 547 89 HOH HOH . J 5 HOH B 48 548 90 HOH HOH . J 5 HOH B 49 549 91 HOH HOH . J 5 HOH B 50 550 100 HOH HOH . J 5 HOH B 51 551 101 HOH HOH . J 5 HOH B 52 552 103 HOH HOH . J 5 HOH B 53 553 104 HOH HOH . J 5 HOH B 54 554 105 HOH HOH . J 5 HOH B 55 555 107 HOH HOH . J 5 HOH B 56 556 108 HOH HOH . J 5 HOH B 57 557 111 HOH HOH . J 5 HOH B 58 558 112 HOH HOH . J 5 HOH B 59 559 115 HOH HOH . J 5 HOH B 60 560 123 HOH HOH . J 5 HOH B 61 561 124 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol FE _atom_site.label_atom_id FE _atom_site.label_comp_id FE2 _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -29.888 _atom_site.Cartn_y -21.632 _atom_site.Cartn_z -20.74 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 33.72 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id FE _atom_site.auth_comp_id FE2 _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #