data_2GP9 # _model_server_result.job_id N36Ps0BvKaH7-8hZMzNHAA _model_server_result.datetime_utc '2024-12-27 01:04:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2gp9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 2GP9 # _exptl.entry_id 2GP9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2GP9 _cell.length_a 57.892 _cell.length_b 57.892 _cell.length_c 119.937 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2GP9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 A CYS 1 1_555 B SG CYS 119 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 B SG CYS 28 B CYS 42 1_555 B SG CYS 44 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 B SG CYS 173 B CYS 168 1_555 B SG CYS 187 B CYS 182 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 173 B CYS 168 1_555 B SG CYS 187 B CYS 182 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 B SG CYS 201 B CYS 191 1_555 B SG CYS 231 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 83 n n N1 C6 EPE sing 84 n n N1 C9 EPE sing 85 n n C2 C3 EPE sing 86 n n C2 H21 EPE sing 87 n n C2 H22 EPE sing 88 n n C3 N4 EPE sing 89 n n C3 H31 EPE sing 90 n n C3 H32 EPE sing 91 n n N4 C5 EPE sing 92 n n N4 C7 EPE sing 93 n n C5 C6 EPE sing 94 n n C5 H51 EPE sing 95 n n C5 H52 EPE sing 96 n n C6 H61 EPE sing 97 n n C6 H62 EPE sing 98 n n C7 C8 EPE sing 99 n n C7 H71 EPE sing 100 n n C7 H72 EPE sing 101 n n C8 O8 EPE sing 102 n n C8 H81 EPE sing 103 n n C8 H82 EPE sing 104 n n O8 HO8 EPE sing 105 n n C9 C10 EPE sing 106 n n C9 H91 EPE sing 107 n n C9 H92 EPE sing 108 n n C10 S EPE sing 109 n n C10 H101 EPE sing 110 n n C10 H102 EPE sing 111 n n S O1S EPE doub 112 n n S O2S EPE doub 113 n n S O3S EPE sing 114 n n O3S HOS3 EPE sing 115 n n # _atom_sites.entry_id 2GP9 _atom_sites.fract_transf_matrix[1][1] 0.017274 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017274 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008338 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EPE B 1 301 301 EPE EPE . D 4 HOH A 1 1019 1019 HOH HOH . D 4 HOH A 2 1026 1026 HOH HOH . D 4 HOH A 3 1031 1031 HOH HOH . D 4 HOH A 4 1041 1041 HOH HOH . D 4 HOH A 5 1065 1065 HOH HOH . D 4 HOH A 6 1069 1069 HOH HOH . D 4 HOH A 7 1075 1075 HOH HOH . D 4 HOH A 8 1078 1078 HOH HOH . D 4 HOH A 9 1083 1083 HOH HOH . D 4 HOH A 10 1091 1091 HOH HOH . D 4 HOH A 11 1105 1105 HOH HOH . D 4 HOH A 12 1110 1110 HOH HOH . D 4 HOH A 13 1115 1115 HOH HOH . D 4 HOH A 14 1118 1118 HOH HOH . D 4 HOH A 15 1124 1124 HOH HOH . D 4 HOH A 16 1131 1131 HOH HOH . D 4 HOH A 17 1140 1140 HOH HOH . D 4 HOH A 18 1145 1145 HOH HOH . D 4 HOH A 19 1150 1150 HOH HOH . E 4 HOH B 1 1001 1001 HOH HOH . E 4 HOH B 2 1002 1002 HOH HOH . E 4 HOH B 3 1003 1003 HOH HOH . E 4 HOH B 4 1004 1004 HOH HOH . E 4 HOH B 5 1005 1005 HOH HOH . E 4 HOH B 6 1006 1006 HOH HOH . E 4 HOH B 7 1007 1007 HOH HOH . E 4 HOH B 8 1008 1008 HOH HOH . E 4 HOH B 9 1009 1009 HOH HOH . E 4 HOH B 10 1010 1010 HOH HOH . E 4 HOH B 11 1011 1011 HOH HOH . E 4 HOH B 12 1012 1012 HOH HOH . E 4 HOH B 13 1013 1013 HOH HOH . E 4 HOH B 14 1014 1014 HOH HOH . E 4 HOH B 15 1015 1015 HOH HOH . E 4 HOH B 16 1016 1016 HOH HOH . E 4 HOH B 17 1017 1017 HOH HOH . E 4 HOH B 18 1018 1018 HOH HOH . E 4 HOH B 19 1020 1020 HOH HOH . E 4 HOH B 20 1021 1021 HOH HOH . E 4 HOH B 21 1022 1022 HOH HOH . E 4 HOH B 22 1023 1023 HOH HOH . E 4 HOH B 23 1024 1024 HOH HOH . E 4 HOH B 24 1025 1025 HOH HOH . E 4 HOH B 25 1027 1027 HOH HOH . E 4 HOH B 26 1028 1028 HOH HOH . E 4 HOH B 27 1029 1029 HOH HOH . E 4 HOH B 28 1030 1030 HOH HOH . E 4 HOH B 29 1032 1032 HOH HOH . E 4 HOH B 30 1033 1033 HOH HOH . E 4 HOH B 31 1034 1034 HOH HOH . E 4 HOH B 32 1035 1035 HOH HOH . E 4 HOH B 33 1036 1036 HOH HOH . E 4 HOH B 34 1037 1037 HOH HOH . E 4 HOH B 35 1038 1038 HOH HOH . E 4 HOH B 36 1039 1039 HOH HOH . E 4 HOH B 37 1040 1040 HOH HOH . E 4 HOH B 38 1042 1042 HOH HOH . E 4 HOH B 39 1043 1043 HOH HOH . E 4 HOH B 40 1044 1044 HOH HOH . E 4 HOH B 41 1045 1045 HOH HOH . E 4 HOH B 42 1046 1046 HOH HOH . E 4 HOH B 43 1047 1047 HOH HOH . E 4 HOH B 44 1048 1048 HOH HOH . E 4 HOH B 45 1049 1049 HOH HOH . E 4 HOH B 46 1050 1050 HOH HOH . E 4 HOH B 47 1051 1051 HOH HOH . E 4 HOH B 48 1052 1052 HOH HOH . E 4 HOH B 49 1053 1053 HOH HOH . E 4 HOH B 50 1054 1054 HOH HOH . E 4 HOH B 51 1055 1055 HOH HOH . E 4 HOH B 52 1056 1056 HOH HOH . E 4 HOH B 53 1057 1057 HOH HOH . E 4 HOH B 54 1058 1058 HOH HOH . E 4 HOH B 55 1059 1059 HOH HOH . E 4 HOH B 56 1060 1060 HOH HOH . E 4 HOH B 57 1061 1061 HOH HOH . E 4 HOH B 58 1062 1062 HOH HOH . E 4 HOH B 59 1063 1063 HOH HOH . E 4 HOH B 60 1064 1064 HOH HOH . E 4 HOH B 61 1066 1066 HOH HOH . E 4 HOH B 62 1067 1067 HOH HOH . E 4 HOH B 63 1068 1068 HOH HOH . E 4 HOH B 64 1070 1070 HOH HOH . E 4 HOH B 65 1071 1071 HOH HOH . E 4 HOH B 66 1072 1072 HOH HOH . E 4 HOH B 67 1073 1073 HOH HOH . E 4 HOH B 68 1074 1074 HOH HOH . E 4 HOH B 69 1076 1076 HOH HOH . E 4 HOH B 70 1077 1077 HOH HOH . E 4 HOH B 71 1079 1079 HOH HOH . E 4 HOH B 72 1080 1080 HOH HOH . E 4 HOH B 73 1081 1081 HOH HOH . E 4 HOH B 74 1082 1082 HOH HOH . E 4 HOH B 75 1084 1084 HOH HOH . E 4 HOH B 76 1085 1085 HOH HOH . E 4 HOH B 77 1086 1086 HOH HOH . E 4 HOH B 78 1087 1087 HOH HOH . E 4 HOH B 79 1088 1088 HOH HOH . E 4 HOH B 80 1089 1089 HOH HOH . E 4 HOH B 81 1090 1090 HOH HOH . E 4 HOH B 82 1092 1092 HOH HOH . E 4 HOH B 83 1093 1093 HOH HOH . E 4 HOH B 84 1094 1094 HOH HOH . E 4 HOH B 85 1095 1095 HOH HOH . E 4 HOH B 86 1096 1096 HOH HOH . E 4 HOH B 87 1097 1097 HOH HOH . E 4 HOH B 88 1098 1098 HOH HOH . E 4 HOH B 89 1099 1099 HOH HOH . E 4 HOH B 90 1100 1100 HOH HOH . E 4 HOH B 91 1101 1101 HOH HOH . E 4 HOH B 92 1102 1102 HOH HOH . E 4 HOH B 93 1103 1103 HOH HOH . E 4 HOH B 94 1104 1104 HOH HOH . E 4 HOH B 95 1106 1106 HOH HOH . E 4 HOH B 96 1107 1107 HOH HOH . E 4 HOH B 97 1108 1108 HOH HOH . E 4 HOH B 98 1109 1109 HOH HOH . E 4 HOH B 99 1111 1111 HOH HOH . E 4 HOH B 100 1112 1112 HOH HOH . E 4 HOH B 101 1113 1113 HOH HOH . E 4 HOH B 102 1114 1114 HOH HOH . E 4 HOH B 103 1116 1116 HOH HOH . E 4 HOH B 104 1117 1117 HOH HOH . E 4 HOH B 105 1119 1119 HOH HOH . E 4 HOH B 106 1120 1120 HOH HOH . E 4 HOH B 107 1121 1121 HOH HOH . E 4 HOH B 108 1122 1122 HOH HOH . E 4 HOH B 109 1123 1123 HOH HOH . E 4 HOH B 110 1125 1125 HOH HOH . E 4 HOH B 111 1126 1126 HOH HOH . E 4 HOH B 112 1127 1127 HOH HOH . E 4 HOH B 113 1128 1128 HOH HOH . E 4 HOH B 114 1129 1129 HOH HOH . E 4 HOH B 115 1130 1130 HOH HOH . E 4 HOH B 116 1132 1132 HOH HOH . E 4 HOH B 117 1133 1133 HOH HOH . E 4 HOH B 118 1134 1134 HOH HOH . E 4 HOH B 119 1135 1135 HOH HOH . E 4 HOH B 120 1136 1136 HOH HOH . E 4 HOH B 121 1137 1137 HOH HOH . E 4 HOH B 122 1138 1138 HOH HOH . E 4 HOH B 123 1139 1139 HOH HOH . E 4 HOH B 124 1141 1141 HOH HOH . E 4 HOH B 125 1142 1142 HOH HOH . E 4 HOH B 126 1143 1143 HOH HOH . E 4 HOH B 127 1144 1144 HOH HOH . E 4 HOH B 128 1146 1146 HOH HOH . E 4 HOH B 129 1147 1147 HOH HOH . E 4 HOH B 130 1148 1148 HOH HOH . E 4 HOH B 131 1149 1149 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . C 3 53.003 6.068 99.868 1 81.8 ? N1 EPE 301 B 1 HETATM 2 C C2 EPE . . . C 3 52.6 5.054 98.751 1 79.03 ? C2 EPE 301 B 1 HETATM 3 C C3 EPE . . . C 3 53.196 3.685 99.227 1 79.39 ? C3 EPE 301 B 1 HETATM 4 N N4 EPE . . . C 3 54.756 3.824 99.295 1 78.63 ? N4 EPE 301 B 1 HETATM 5 C C5 EPE . . . C 3 55.233 4.887 100.22 1 79.84 ? C5 EPE 301 B 1 HETATM 6 C C6 EPE . . . C 3 54.552 6.268 99.954 1 81.58 ? C6 EPE 301 B 1 HETATM 7 C C7 EPE . . . C 3 55.517 2.595 99.759 1 77.12 ? C7 EPE 301 B 1 HETATM 8 C C8 EPE . . . C 3 55.046 1.849 100.964 1 76.97 ? C8 EPE 301 B 1 HETATM 9 O O8 EPE . . . C 3 54.734 2.682 102.096 1 70.57 ? O8 EPE 301 B 1 HETATM 10 C C9 EPE . . . C 3 52.536 7.412 99.649 1 85.16 ? C9 EPE 301 B 1 HETATM 11 C C10 EPE . . . C 3 51.109 7.493 100.164 1 89.61 ? C10 EPE 301 B 1 HETATM 12 S S EPE . . . C 3 50.15 8.992 100.111 1 94.37 ? S EPE 301 B 1 HETATM 13 O O1S EPE . . . C 3 48.835 8.686 100.671 1 93.07 ? O1S EPE 301 B 1 HETATM 14 O O2S EPE . . . C 3 50.072 9.387 98.706 1 92.37 ? O2S EPE 301 B 1 HETATM 15 O O3S EPE . . . C 3 50.919 9.91 100.934 1 93.19 ? O3S EPE 301 B 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 350 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 15 #