data_2GPJ # _model_server_result.job_id '_NM51mlGkBVTOFlm5XOeKw' _model_server_result.datetime_utc '2024-10-14 07:28:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2gpj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":500}' # _entry.id 2GPJ # _exptl.entry_id 2GPJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2GPJ _cell.length_a 100.54 _cell.length_b 100.54 _cell.length_c 67.51 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2GPJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 22 A HIS 21 1_555 A N MSE 23 A MSE 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale2 A C MSE 23 A MSE 22 1_555 A N LEU 24 A LEU 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C LEU 57 A LEU 56 1_555 A N MSE 58 A MSE 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale4 A C MSE 58 A MSE 57 1_555 A N ARG 59 A ARG 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale5 A C ASP 120 A ASP 119 1_555 A N MSE 121 A MSE 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale6 A C MSE 121 A MSE 120 1_555 A N THR 122 A THR 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale7 A C SER 202 A SER 201 1_555 A N MSE 203 A MSE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 A C MSE 203 A MSE 202 1_555 A N ARG 204 A ARG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? metalc ? metalc1 A NE2 HIS 209 A HIS 208 1_555 C CA CA . A CA 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc2 C CA CA . A CA 253 1_555 S O ACY . A ACY 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.123 ? metalc ? metalc3 C CA CA . A CA 253 1_555 S OXT ACY . A ACY 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2GPJ _atom_sites.fract_transf_matrix[1][1] 0.00995 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00995 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01481 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 252 1 CA CA . C 2 CA A 1 253 2 CA CA . D 3 CL A 1 254 3 CL CL . E 4 FAD A 1 500 500 FAD FAD . F 5 EDO A 1 501 4 EDO EDO . G 5 EDO A 1 502 5 EDO EDO . H 5 EDO A 1 503 6 EDO EDO . I 5 EDO A 1 504 7 EDO EDO . J 5 EDO A 1 505 8 EDO EDO . K 5 EDO A 1 506 9 EDO EDO . L 5 EDO A 1 507 10 EDO EDO . M 5 EDO A 1 508 11 EDO EDO . N 6 ACY A 1 509 12 ACY ACY . O 6 ACY A 1 510 13 ACY ACY . P 6 ACY A 1 511 14 ACY ACY . Q 6 ACY A 1 512 15 ACY ACY . R 6 ACY A 1 513 16 ACY ACY . S 6 ACY A 1 514 17 ACY ACY . T 7 HOH A 1 515 18 HOH HOH . T 7 HOH A 2 516 19 HOH HOH . T 7 HOH A 3 517 20 HOH HOH . T 7 HOH A 4 518 21 HOH HOH . T 7 HOH A 5 519 22 HOH HOH . T 7 HOH A 6 520 23 HOH HOH . T 7 HOH A 7 521 24 HOH HOH . T 7 HOH A 8 522 25 HOH HOH . T 7 HOH A 9 523 26 HOH HOH . T 7 HOH A 10 524 27 HOH HOH . T 7 HOH A 11 525 28 HOH HOH . T 7 HOH A 12 526 29 HOH HOH . T 7 HOH A 13 527 30 HOH HOH . T 7 HOH A 14 528 31 HOH HOH . T 7 HOH A 15 529 32 HOH HOH . T 7 HOH A 16 530 33 HOH HOH . T 7 HOH A 17 531 34 HOH HOH . T 7 HOH A 18 532 35 HOH HOH . T 7 HOH A 19 533 36 HOH HOH . T 7 HOH A 20 534 37 HOH HOH . T 7 HOH A 21 535 38 HOH HOH . T 7 HOH A 22 536 39 HOH HOH . T 7 HOH A 23 537 40 HOH HOH . T 7 HOH A 24 538 41 HOH HOH . T 7 HOH A 25 539 42 HOH HOH . T 7 HOH A 26 540 43 HOH HOH . T 7 HOH A 27 541 44 HOH HOH . T 7 HOH A 28 542 45 HOH HOH . T 7 HOH A 29 543 46 HOH HOH . T 7 HOH A 30 544 47 HOH HOH . T 7 HOH A 31 545 48 HOH HOH . T 7 HOH A 32 546 49 HOH HOH . T 7 HOH A 33 547 50 HOH HOH . T 7 HOH A 34 548 51 HOH HOH . T 7 HOH A 35 549 52 HOH HOH . T 7 HOH A 36 550 53 HOH HOH . T 7 HOH A 37 551 54 HOH HOH . T 7 HOH A 38 552 55 HOH HOH . T 7 HOH A 39 553 56 HOH HOH . T 7 HOH A 40 554 57 HOH HOH . T 7 HOH A 41 555 58 HOH HOH . T 7 HOH A 42 556 59 HOH HOH . T 7 HOH A 43 557 60 HOH HOH . T 7 HOH A 44 558 61 HOH HOH . T 7 HOH A 45 559 62 HOH HOH . T 7 HOH A 46 560 63 HOH HOH . T 7 HOH A 47 561 64 HOH HOH . T 7 HOH A 48 562 65 HOH HOH . T 7 HOH A 49 563 66 HOH HOH . T 7 HOH A 50 564 67 HOH HOH . T 7 HOH A 51 565 68 HOH HOH . T 7 HOH A 52 566 69 HOH HOH . T 7 HOH A 53 567 70 HOH HOH . T 7 HOH A 54 568 71 HOH HOH . T 7 HOH A 55 569 72 HOH HOH . T 7 HOH A 56 570 73 HOH HOH . T 7 HOH A 57 571 74 HOH HOH . T 7 HOH A 58 572 75 HOH HOH . T 7 HOH A 59 573 76 HOH HOH . T 7 HOH A 60 574 77 HOH HOH . T 7 HOH A 61 575 78 HOH HOH . T 7 HOH A 62 576 79 HOH HOH . T 7 HOH A 63 577 80 HOH HOH . T 7 HOH A 64 578 81 HOH HOH . T 7 HOH A 65 579 82 HOH HOH . T 7 HOH A 66 580 83 HOH HOH . T 7 HOH A 67 581 84 HOH HOH . T 7 HOH A 68 582 85 HOH HOH . T 7 HOH A 69 583 86 HOH HOH . T 7 HOH A 70 584 87 HOH HOH . T 7 HOH A 71 585 88 HOH HOH . T 7 HOH A 72 586 89 HOH HOH . T 7 HOH A 73 587 90 HOH HOH . T 7 HOH A 74 588 91 HOH HOH . T 7 HOH A 75 589 92 HOH HOH . T 7 HOH A 76 590 93 HOH HOH . T 7 HOH A 77 591 94 HOH HOH . T 7 HOH A 78 592 95 HOH HOH . T 7 HOH A 79 593 96 HOH HOH . T 7 HOH A 80 594 97 HOH HOH . T 7 HOH A 81 595 98 HOH HOH . T 7 HOH A 82 596 99 HOH HOH . T 7 HOH A 83 597 100 HOH HOH . T 7 HOH A 84 598 101 HOH HOH . T 7 HOH A 85 599 102 HOH HOH . T 7 HOH A 86 600 103 HOH HOH . T 7 HOH A 87 601 104 HOH HOH . T 7 HOH A 88 602 105 HOH HOH . T 7 HOH A 89 603 106 HOH HOH . T 7 HOH A 90 604 107 HOH HOH . T 7 HOH A 91 605 108 HOH HOH . T 7 HOH A 92 606 109 HOH HOH . T 7 HOH A 93 607 110 HOH HOH . T 7 HOH A 94 608 111 HOH HOH . T 7 HOH A 95 609 112 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . E 4 9.666 34.459 14.339 1 32.56 ? PA FAD 500 A 1 HETATM 2 O O1A FAD . . . E 4 9.753 35.308 15.57 1 35.51 ? O1A FAD 500 A 1 HETATM 3 O O2A FAD . . . E 4 8.979 35.234 13.254 1 28.66 ? O2A FAD 500 A 1 HETATM 4 O O5B FAD . . . E 4 11.109 34.015 13.817 1 39.53 ? O5B FAD 500 A 1 HETATM 5 C C5B FAD . . . E 4 12.011 33.37 14.691 1 37.86 ? C5B FAD 500 A 1 HETATM 6 C C4B FAD . . . E 4 13.019 32.577 13.878 1 39.23 ? C4B FAD 500 A 1 HETATM 7 O O4B FAD . . . E 4 12.431 31.399 13.355 1 34.95 ? O4B FAD 500 A 1 HETATM 8 C C3B FAD . . . E 4 13.558 33.352 12.689 1 39.59 ? C3B FAD 500 A 1 HETATM 9 O O3B FAD . . . E 4 14.932 33.057 12.586 1 42.51 ? O3B FAD 500 A 1 HETATM 10 C C2B FAD . . . E 4 12.807 32.783 11.509 1 43.1 ? C2B FAD 500 A 1 HETATM 11 O O2B FAD . . . E 4 13.569 32.834 10.329 1 34.47 ? O2B FAD 500 A 1 HETATM 12 C C1B FAD . . . E 4 12.575 31.353 11.954 1 38.62 ? C1B FAD 500 A 1 HETATM 13 N N9A FAD . . . E 4 11.36 30.737 11.437 1 34.77 ? N9A FAD 500 A 1 HETATM 14 C C8A FAD . . . E 4 10.095 31.254 11.424 1 37.31 ? C8A FAD 500 A 1 HETATM 15 N N7A FAD . . . E 4 9.281 30.321 10.891 1 40 ? N7A FAD 500 A 1 HETATM 16 C C5A FAD . . . E 4 10.01 29.219 10.577 1 40.37 ? C5A FAD 500 A 1 HETATM 17 C C6A FAD . . . E 4 9.69 27.981 10.009 1 42.49 ? C6A FAD 500 A 1 HETATM 18 N N6A FAD . . . E 4 8.416 27.588 9.848 1 29.87 ? N6A FAD 500 A 1 HETATM 19 N N1A FAD . . . E 4 10.711 27.064 9.824 1 33.14 ? N1A FAD 500 A 1 HETATM 20 C C2A FAD . . . E 4 12.019 27.343 10.173 1 35.34 ? C2A FAD 500 A 1 HETATM 21 N N3A FAD . . . E 4 12.327 28.568 10.725 1 33.39 ? N3A FAD 500 A 1 HETATM 22 C C4A FAD . . . E 4 11.329 29.474 10.933 1 38.11 ? C4A FAD 500 A 1 HETATM 23 N N1 FAD . . . E 4 3.214 29.082 10.027 1 30.91 ? N1 FAD 500 A 1 HETATM 24 C C2 FAD . . . E 4 2.715 27.974 10.677 1 35.29 ? C2 FAD 500 A 1 HETATM 25 O O2 FAD . . . E 4 3.453 27.309 11.384 1 26.35 ? O2 FAD 500 A 1 HETATM 26 N N3 FAD . . . E 4 1.393 27.601 10.556 1 41.4 ? N3 FAD 500 A 1 HETATM 27 C C4 FAD . . . E 4 0.549 28.343 9.763 1 34.47 ? C4 FAD 500 A 1 HETATM 28 O O4 FAD . . . E 4 -0.651 28.045 9.75 1 40.2 ? O4 FAD 500 A 1 HETATM 29 C C4X FAD . . . E 4 1.051 29.458 9.094 1 37.55 ? C4X FAD 500 A 1 HETATM 30 N N5 FAD . . . E 4 0.246 30.225 8.276 1 35.63 ? N5 FAD 500 A 1 HETATM 31 C C5X FAD . . . E 4 0.757 31.332 7.634 1 25.16 ? C5X FAD 500 A 1 HETATM 32 C C6 FAD . . . E 4 -0.061 32.102 6.816 1 28.93 ? C6 FAD 500 A 1 HETATM 33 C C7 FAD . . . E 4 0.464 33.222 6.163 1 35.15 ? C7 FAD 500 A 1 HETATM 34 C C7M FAD . . . E 4 -0.417 33.943 5.185 1 34.6 ? C7M FAD 500 A 1 HETATM 35 C C8 FAD . . . E 4 1.822 33.574 6.322 1 30.64 ? C8 FAD 500 A 1 HETATM 36 C C8M FAD . . . E 4 2.407 34.836 5.715 1 28.25 ? C8M FAD 500 A 1 HETATM 37 C C9 FAD . . . E 4 2.636 32.799 7.148 1 36.86 ? C9 FAD 500 A 1 HETATM 38 C C9A FAD . . . E 4 2.098 31.68 7.795 1 38.07 ? C9A FAD 500 A 1 HETATM 39 N N10 FAD . . . E 4 2.904 30.908 8.601 1 40.63 ? N10 FAD 500 A 1 HETATM 40 C C10 FAD . . . E 4 2.389 29.815 9.241 1 31.31 ? C10 FAD 500 A 1 HETATM 41 C C1' FAD . . . E 4 4.344 31.254 8.793 1 34.36 ? C1' FAD 500 A 1 HETATM 42 C C2' FAD . . . E 4 4.558 31.981 10.113 1 26.67 ? C2' FAD 500 A 1 HETATM 43 O O2' FAD . . . E 4 3.895 33.231 10.07 1 30.18 ? O2' FAD 500 A 1 HETATM 44 C C3' FAD . . . E 4 6.067 32.098 10.37 1 26.19 ? C3' FAD 500 A 1 HETATM 45 O O3' FAD . . . E 4 6.609 30.79 10.465 1 26.05 ? O3' FAD 500 A 1 HETATM 46 C C4' FAD . . . E 4 6.433 32.905 11.625 1 23.06 ? C4' FAD 500 A 1 HETATM 47 O O4' FAD . . . E 4 7.739 33.466 11.482 1 32.94 ? O4' FAD 500 A 1 HETATM 48 C C5' FAD . . . E 4 6.406 32.094 12.911 1 29.34 ? C5' FAD 500 A 1 HETATM 49 O O5' FAD . . . E 4 6.482 33.014 13.981 1 34.02 ? O5' FAD 500 A 1 HETATM 50 P P FAD . . . E 4 7.448 32.776 15.233 1 35.71 ? P FAD 500 A 1 HETATM 51 O O1P FAD . . . E 4 7.022 33.722 16.315 1 26.7 ? O1P FAD 500 A 1 HETATM 52 O O2P FAD . . . E 4 7.445 31.375 15.726 1 32.42 ? O2P FAD 500 A 1 HETATM 53 O O3P FAD . . . E 4 8.966 33.05 14.711 1 39.76 ? O3P FAD 500 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 53 #