data_2GPJ # _model_server_result.job_id jMbwzq0J4VWnD54po7cxVw _model_server_result.datetime_utc '2024-10-14 07:28:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2gpj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":511}' # _entry.id 2GPJ # _exptl.entry_id 2GPJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 60.052 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETIC ACID' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2GPJ _cell.length_a 100.54 _cell.length_b 100.54 _cell.length_c 67.51 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2GPJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 N N N ? 6 O N N ? 6 P N N ? 6 Q N N ? 6 R N N ? 6 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 22 A HIS 21 1_555 A N MSE 23 A MSE 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale2 A C MSE 23 A MSE 22 1_555 A N LEU 24 A LEU 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C LEU 57 A LEU 56 1_555 A N MSE 58 A MSE 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale4 A C MSE 58 A MSE 57 1_555 A N ARG 59 A ARG 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale5 A C ASP 120 A ASP 119 1_555 A N MSE 121 A MSE 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale6 A C MSE 121 A MSE 120 1_555 A N THR 122 A THR 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale7 A C SER 202 A SER 201 1_555 A N MSE 203 A MSE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 A C MSE 203 A MSE 202 1_555 A N ARG 204 A ARG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? metalc ? metalc1 A NE2 HIS 209 A HIS 208 1_555 C CA CA . A CA 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc2 C CA CA . A CA 253 1_555 S O ACY . A ACY 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.123 ? metalc ? metalc3 C CA CA . A CA 253 1_555 S OXT ACY . A ACY 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? # _chem_comp.formula 'C2 H4 O2' _chem_comp.formula_weight 60.052 _chem_comp.id ACY _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2GPJ _atom_sites.fract_transf_matrix[1][1] 0.00995 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00995 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01481 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 252 1 CA CA . C 2 CA A 1 253 2 CA CA . D 3 CL A 1 254 3 CL CL . E 4 FAD A 1 500 500 FAD FAD . F 5 EDO A 1 501 4 EDO EDO . G 5 EDO A 1 502 5 EDO EDO . H 5 EDO A 1 503 6 EDO EDO . I 5 EDO A 1 504 7 EDO EDO . J 5 EDO A 1 505 8 EDO EDO . K 5 EDO A 1 506 9 EDO EDO . L 5 EDO A 1 507 10 EDO EDO . M 5 EDO A 1 508 11 EDO EDO . N 6 ACY A 1 509 12 ACY ACY . O 6 ACY A 1 510 13 ACY ACY . P 6 ACY A 1 511 14 ACY ACY . Q 6 ACY A 1 512 15 ACY ACY . R 6 ACY A 1 513 16 ACY ACY . S 6 ACY A 1 514 17 ACY ACY . T 7 HOH A 1 515 18 HOH HOH . T 7 HOH A 2 516 19 HOH HOH . T 7 HOH A 3 517 20 HOH HOH . T 7 HOH A 4 518 21 HOH HOH . T 7 HOH A 5 519 22 HOH HOH . T 7 HOH A 6 520 23 HOH HOH . T 7 HOH A 7 521 24 HOH HOH . T 7 HOH A 8 522 25 HOH HOH . T 7 HOH A 9 523 26 HOH HOH . T 7 HOH A 10 524 27 HOH HOH . T 7 HOH A 11 525 28 HOH HOH . T 7 HOH A 12 526 29 HOH HOH . T 7 HOH A 13 527 30 HOH HOH . T 7 HOH A 14 528 31 HOH HOH . T 7 HOH A 15 529 32 HOH HOH . T 7 HOH A 16 530 33 HOH HOH . T 7 HOH A 17 531 34 HOH HOH . T 7 HOH A 18 532 35 HOH HOH . T 7 HOH A 19 533 36 HOH HOH . T 7 HOH A 20 534 37 HOH HOH . T 7 HOH A 21 535 38 HOH HOH . T 7 HOH A 22 536 39 HOH HOH . T 7 HOH A 23 537 40 HOH HOH . T 7 HOH A 24 538 41 HOH HOH . T 7 HOH A 25 539 42 HOH HOH . T 7 HOH A 26 540 43 HOH HOH . T 7 HOH A 27 541 44 HOH HOH . T 7 HOH A 28 542 45 HOH HOH . T 7 HOH A 29 543 46 HOH HOH . T 7 HOH A 30 544 47 HOH HOH . T 7 HOH A 31 545 48 HOH HOH . T 7 HOH A 32 546 49 HOH HOH . T 7 HOH A 33 547 50 HOH HOH . T 7 HOH A 34 548 51 HOH HOH . T 7 HOH A 35 549 52 HOH HOH . T 7 HOH A 36 550 53 HOH HOH . T 7 HOH A 37 551 54 HOH HOH . T 7 HOH A 38 552 55 HOH HOH . T 7 HOH A 39 553 56 HOH HOH . T 7 HOH A 40 554 57 HOH HOH . T 7 HOH A 41 555 58 HOH HOH . T 7 HOH A 42 556 59 HOH HOH . T 7 HOH A 43 557 60 HOH HOH . T 7 HOH A 44 558 61 HOH HOH . T 7 HOH A 45 559 62 HOH HOH . T 7 HOH A 46 560 63 HOH HOH . T 7 HOH A 47 561 64 HOH HOH . T 7 HOH A 48 562 65 HOH HOH . T 7 HOH A 49 563 66 HOH HOH . T 7 HOH A 50 564 67 HOH HOH . T 7 HOH A 51 565 68 HOH HOH . T 7 HOH A 52 566 69 HOH HOH . T 7 HOH A 53 567 70 HOH HOH . T 7 HOH A 54 568 71 HOH HOH . T 7 HOH A 55 569 72 HOH HOH . T 7 HOH A 56 570 73 HOH HOH . T 7 HOH A 57 571 74 HOH HOH . T 7 HOH A 58 572 75 HOH HOH . T 7 HOH A 59 573 76 HOH HOH . T 7 HOH A 60 574 77 HOH HOH . T 7 HOH A 61 575 78 HOH HOH . T 7 HOH A 62 576 79 HOH HOH . T 7 HOH A 63 577 80 HOH HOH . T 7 HOH A 64 578 81 HOH HOH . T 7 HOH A 65 579 82 HOH HOH . T 7 HOH A 66 580 83 HOH HOH . T 7 HOH A 67 581 84 HOH HOH . T 7 HOH A 68 582 85 HOH HOH . T 7 HOH A 69 583 86 HOH HOH . T 7 HOH A 70 584 87 HOH HOH . T 7 HOH A 71 585 88 HOH HOH . T 7 HOH A 72 586 89 HOH HOH . T 7 HOH A 73 587 90 HOH HOH . T 7 HOH A 74 588 91 HOH HOH . T 7 HOH A 75 589 92 HOH HOH . T 7 HOH A 76 590 93 HOH HOH . T 7 HOH A 77 591 94 HOH HOH . T 7 HOH A 78 592 95 HOH HOH . T 7 HOH A 79 593 96 HOH HOH . T 7 HOH A 80 594 97 HOH HOH . T 7 HOH A 81 595 98 HOH HOH . T 7 HOH A 82 596 99 HOH HOH . T 7 HOH A 83 597 100 HOH HOH . T 7 HOH A 84 598 101 HOH HOH . T 7 HOH A 85 599 102 HOH HOH . T 7 HOH A 86 600 103 HOH HOH . T 7 HOH A 87 601 104 HOH HOH . T 7 HOH A 88 602 105 HOH HOH . T 7 HOH A 89 603 106 HOH HOH . T 7 HOH A 90 604 107 HOH HOH . T 7 HOH A 91 605 108 HOH HOH . T 7 HOH A 92 606 109 HOH HOH . T 7 HOH A 93 607 110 HOH HOH . T 7 HOH A 94 608 111 HOH HOH . T 7 HOH A 95 609 112 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACY . . . P 6 10.244 12.403 -9.61 1 54.09 ? C ACY 511 A 1 HETATM 2 O O ACY . . . P 6 10.987 12.698 -8.631 1 44.76 ? O ACY 511 A 1 HETATM 3 O OXT ACY . . . P 6 10.355 11.399 -10.369 1 48.48 ? OXT ACY 511 A 1 HETATM 4 C CH3 ACY . . . P 6 9.116 13.338 -9.902 1 59.39 ? CH3 ACY 511 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #