data_2GPT # _model_server_result.job_id fy3bhjgm4n7BW5AZwZ24kg _model_server_result.datetime_utc '2024-11-04 18:30:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2gpt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":4733}' # _entry.id 2GPT # _exptl.entry_id 2GPT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 174.151 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE-1-CARBOXYLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2GPT _cell.length_a 96.934 _cell.length_b 96.934 _cell.length_c 116.157 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2GPT _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H10 O5' _chem_comp.formula_weight 174.151 _chem_comp.id SKM _chem_comp.mon_nstd_flag . _chem_comp.name '(3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE-1-CARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms SHIKIMATE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 C8 SKM sing 290 n n O12 H12 SKM sing 291 n n C8 C6 SKM sing 292 n n C8 C9 SKM sing 293 n n C8 H8 SKM sing 294 n n C6 O7 SKM sing 295 n n C6 C5 SKM sing 296 n n C6 H6 SKM sing 297 n n O7 HO7 SKM sing 298 n n C5 C4 SKM sing 299 n n C5 H51 SKM sing 300 n n C5 H52 SKM sing 301 n n C4 C1 SKM sing 302 n n C4 C10 SKM doub 303 n n C1 O2 SKM sing 304 n n C1 O3 SKM doub 305 n n O2 HO2 SKM sing 306 n n C10 C9 SKM sing 307 n n C10 H10 SKM sing 308 n n C9 O11 SKM sing 309 n n C9 H9 SKM sing 310 n n O11 H11 SKM sing 311 n n # _atom_sites.entry_id 2GPT _atom_sites.fract_transf_matrix[1][1] 0.010316 _atom_sites.fract_transf_matrix[1][2] 0.005956 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011912 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008609 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1402 1402 SO4 SO4 . C 2 SO4 A 1 1403 1403 SO4 SO4 . D 3 TLA A 1 4988 4988 TLA TLA . E 4 SKM A 1 4733 4733 SKM SKM . F 5 HOH A 1 4989 1 HOH TIP . F 5 HOH A 2 4990 2 HOH TIP . F 5 HOH A 3 4991 3 HOH TIP . F 5 HOH A 4 4992 4 HOH TIP . F 5 HOH A 5 4993 5 HOH TIP . F 5 HOH A 6 4994 6 HOH TIP . F 5 HOH A 7 4995 7 HOH TIP . F 5 HOH A 8 4996 8 HOH TIP . F 5 HOH A 9 4997 9 HOH TIP . F 5 HOH A 10 4998 10 HOH TIP . F 5 HOH A 11 4999 11 HOH TIP . F 5 HOH A 12 5000 12 HOH TIP . F 5 HOH A 13 5001 13 HOH TIP . F 5 HOH A 14 5002 14 HOH TIP . F 5 HOH A 15 5003 15 HOH TIP . F 5 HOH A 16 5004 16 HOH TIP . F 5 HOH A 17 5005 17 HOH TIP . F 5 HOH A 18 5006 18 HOH TIP . F 5 HOH A 19 5007 19 HOH TIP . F 5 HOH A 20 5008 20 HOH TIP . F 5 HOH A 21 5009 21 HOH TIP . F 5 HOH A 22 5010 22 HOH TIP . F 5 HOH A 23 5011 23 HOH TIP . F 5 HOH A 24 5012 24 HOH TIP . F 5 HOH A 25 5013 25 HOH TIP . F 5 HOH A 26 5014 26 HOH TIP . F 5 HOH A 27 5015 27 HOH TIP . F 5 HOH A 28 5016 28 HOH TIP . F 5 HOH A 29 5017 29 HOH TIP . F 5 HOH A 30 5018 30 HOH TIP . F 5 HOH A 31 5019 31 HOH TIP . F 5 HOH A 32 5020 32 HOH TIP . F 5 HOH A 33 5021 33 HOH TIP . F 5 HOH A 34 5022 34 HOH TIP . F 5 HOH A 35 5023 35 HOH TIP . F 5 HOH A 36 5024 36 HOH TIP . F 5 HOH A 37 5025 37 HOH TIP . F 5 HOH A 38 5026 38 HOH TIP . F 5 HOH A 39 5027 39 HOH TIP . F 5 HOH A 40 5028 40 HOH TIP . F 5 HOH A 41 5029 41 HOH TIP . F 5 HOH A 42 5030 42 HOH TIP . F 5 HOH A 43 5031 43 HOH TIP . F 5 HOH A 44 5032 44 HOH TIP . F 5 HOH A 45 5033 45 HOH TIP . F 5 HOH A 46 5034 46 HOH TIP . F 5 HOH A 47 5035 47 HOH TIP . F 5 HOH A 48 5036 48 HOH TIP . F 5 HOH A 49 5037 49 HOH TIP . F 5 HOH A 50 5038 50 HOH TIP . F 5 HOH A 51 5039 51 HOH TIP . F 5 HOH A 52 5040 52 HOH TIP . F 5 HOH A 53 5041 53 HOH TIP . F 5 HOH A 54 5042 54 HOH TIP . F 5 HOH A 55 5043 55 HOH TIP . F 5 HOH A 56 5044 56 HOH TIP . F 5 HOH A 57 5045 57 HOH TIP . F 5 HOH A 58 5046 58 HOH TIP . F 5 HOH A 59 5047 59 HOH TIP . F 5 HOH A 60 5048 60 HOH TIP . F 5 HOH A 61 5049 61 HOH TIP . F 5 HOH A 62 5050 62 HOH TIP . F 5 HOH A 63 5051 63 HOH TIP . F 5 HOH A 64 5052 64 HOH TIP . F 5 HOH A 65 5053 65 HOH TIP . F 5 HOH A 66 5054 66 HOH TIP . F 5 HOH A 67 5055 67 HOH TIP . F 5 HOH A 68 5056 68 HOH TIP . F 5 HOH A 69 5057 69 HOH TIP . F 5 HOH A 70 5058 70 HOH TIP . F 5 HOH A 71 5059 71 HOH TIP . F 5 HOH A 72 5060 72 HOH TIP . F 5 HOH A 73 5061 73 HOH TIP . F 5 HOH A 74 5062 74 HOH TIP . F 5 HOH A 75 5063 75 HOH TIP . F 5 HOH A 76 5064 76 HOH TIP . F 5 HOH A 77 5065 77 HOH TIP . F 5 HOH A 78 5066 78 HOH TIP . F 5 HOH A 79 5067 79 HOH TIP . F 5 HOH A 80 5068 80 HOH TIP . F 5 HOH A 81 5069 81 HOH TIP . F 5 HOH A 82 5070 82 HOH TIP . F 5 HOH A 83 5071 83 HOH TIP . F 5 HOH A 84 5072 84 HOH TIP . F 5 HOH A 85 5073 85 HOH TIP . F 5 HOH A 86 5074 86 HOH TIP . F 5 HOH A 87 5075 87 HOH TIP . F 5 HOH A 88 5076 88 HOH TIP . F 5 HOH A 89 5077 89 HOH TIP . F 5 HOH A 90 5078 90 HOH TIP . F 5 HOH A 91 5079 91 HOH TIP . F 5 HOH A 92 5080 92 HOH TIP . F 5 HOH A 93 5081 93 HOH TIP . F 5 HOH A 94 5082 94 HOH TIP . F 5 HOH A 95 5083 95 HOH TIP . F 5 HOH A 96 5084 96 HOH TIP . F 5 HOH A 97 5085 97 HOH TIP . F 5 HOH A 98 5086 98 HOH TIP . F 5 HOH A 99 5087 99 HOH TIP . F 5 HOH A 100 5088 100 HOH TIP . F 5 HOH A 101 5089 101 HOH TIP . F 5 HOH A 102 5090 102 HOH TIP . F 5 HOH A 103 5091 103 HOH TIP . F 5 HOH A 104 5092 104 HOH TIP . F 5 HOH A 105 5093 105 HOH TIP . F 5 HOH A 106 5094 106 HOH TIP . F 5 HOH A 107 5095 107 HOH TIP . F 5 HOH A 108 5096 108 HOH TIP . F 5 HOH A 109 5097 109 HOH TIP . F 5 HOH A 110 5098 110 HOH TIP . F 5 HOH A 111 5099 111 HOH TIP . F 5 HOH A 112 5100 112 HOH TIP . F 5 HOH A 113 5101 113 HOH TIP . F 5 HOH A 114 5102 114 HOH TIP . F 5 HOH A 115 5103 115 HOH TIP . F 5 HOH A 116 5104 116 HOH TIP . F 5 HOH A 117 5105 117 HOH TIP . F 5 HOH A 118 5106 118 HOH TIP . F 5 HOH A 119 5107 119 HOH TIP . F 5 HOH A 120 5108 120 HOH TIP . F 5 HOH A 121 5109 121 HOH TIP . F 5 HOH A 122 5110 122 HOH TIP . F 5 HOH A 123 5111 123 HOH TIP . F 5 HOH A 124 5112 124 HOH TIP . F 5 HOH A 125 5113 125 HOH TIP . F 5 HOH A 126 5114 126 HOH TIP . F 5 HOH A 127 5115 127 HOH TIP . F 5 HOH A 128 5116 128 HOH TIP . F 5 HOH A 129 5117 129 HOH TIP . F 5 HOH A 130 5118 130 HOH TIP . F 5 HOH A 131 5119 131 HOH TIP . F 5 HOH A 132 5120 132 HOH TIP . F 5 HOH A 133 5121 133 HOH TIP . F 5 HOH A 134 5122 134 HOH TIP . F 5 HOH A 135 5123 135 HOH TIP . F 5 HOH A 136 5124 136 HOH TIP . F 5 HOH A 137 5125 137 HOH TIP . F 5 HOH A 138 5126 138 HOH TIP . F 5 HOH A 139 5127 139 HOH TIP . F 5 HOH A 140 5128 140 HOH TIP . F 5 HOH A 141 5129 141 HOH TIP . F 5 HOH A 142 5130 142 HOH TIP . F 5 HOH A 143 5131 143 HOH TIP . F 5 HOH A 144 5132 144 HOH TIP . F 5 HOH A 145 5133 145 HOH TIP . F 5 HOH A 146 5134 146 HOH TIP . F 5 HOH A 147 5135 147 HOH TIP . F 5 HOH A 148 5136 148 HOH TIP . F 5 HOH A 149 5137 149 HOH TIP . F 5 HOH A 150 5138 150 HOH TIP . F 5 HOH A 151 5139 151 HOH TIP . F 5 HOH A 152 5140 152 HOH TIP . F 5 HOH A 153 5141 153 HOH TIP . F 5 HOH A 154 5142 154 HOH TIP . F 5 HOH A 155 5143 155 HOH TIP . F 5 HOH A 156 5144 156 HOH TIP . F 5 HOH A 157 5145 157 HOH TIP . F 5 HOH A 158 5146 158 HOH TIP . F 5 HOH A 159 5147 159 HOH TIP . F 5 HOH A 160 5148 160 HOH TIP . F 5 HOH A 161 5149 161 HOH TIP . F 5 HOH A 162 5150 162 HOH TIP . F 5 HOH A 163 5151 163 HOH TIP . F 5 HOH A 164 5152 164 HOH TIP . F 5 HOH A 165 5153 165 HOH TIP . F 5 HOH A 166 5154 166 HOH TIP . F 5 HOH A 167 5155 167 HOH TIP . F 5 HOH A 168 5156 168 HOH TIP . F 5 HOH A 169 5157 169 HOH TIP . F 5 HOH A 170 5158 170 HOH TIP . F 5 HOH A 171 5159 171 HOH TIP . F 5 HOH A 172 5160 172 HOH TIP . F 5 HOH A 173 5161 173 HOH TIP . F 5 HOH A 174 5162 174 HOH TIP . F 5 HOH A 175 5163 175 HOH TIP . F 5 HOH A 176 5164 176 HOH TIP . F 5 HOH A 177 5165 177 HOH TIP . F 5 HOH A 178 5166 178 HOH TIP . F 5 HOH A 179 5167 179 HOH TIP . F 5 HOH A 180 5168 180 HOH TIP . F 5 HOH A 181 5169 181 HOH TIP . F 5 HOH A 182 5170 182 HOH TIP . F 5 HOH A 183 5171 183 HOH TIP . F 5 HOH A 184 5172 184 HOH TIP . F 5 HOH A 185 5173 185 HOH TIP . F 5 HOH A 186 5174 186 HOH TIP . F 5 HOH A 187 5175 187 HOH TIP . F 5 HOH A 188 5176 188 HOH TIP . F 5 HOH A 189 5177 190 HOH TIP . F 5 HOH A 190 5178 191 HOH TIP . F 5 HOH A 191 5179 192 HOH TIP . F 5 HOH A 192 5180 193 HOH TIP . F 5 HOH A 193 5181 194 HOH TIP . F 5 HOH A 194 5182 195 HOH TIP . F 5 HOH A 195 5183 196 HOH TIP . F 5 HOH A 196 5184 197 HOH TIP . F 5 HOH A 197 5185 198 HOH TIP . F 5 HOH A 198 5186 199 HOH TIP . F 5 HOH A 199 5187 200 HOH TIP . F 5 HOH A 200 5188 201 HOH TIP . F 5 HOH A 201 5189 503 HOH TIP . F 5 HOH A 202 5190 504 HOH TIP . F 5 HOH A 203 5191 505 HOH TIP . F 5 HOH A 204 5192 506 HOH TIP . F 5 HOH A 205 5193 507 HOH TIP . F 5 HOH A 206 5194 508 HOH TIP . F 5 HOH A 207 5195 509 HOH TIP . F 5 HOH A 208 5196 510 HOH TIP . F 5 HOH A 209 5197 512 HOH TIP . F 5 HOH A 210 5198 513 HOH TIP . F 5 HOH A 211 5199 514 HOH TIP . F 5 HOH A 212 5200 515 HOH TIP . F 5 HOH A 213 5201 516 HOH TIP . F 5 HOH A 214 5202 517 HOH TIP . F 5 HOH A 215 5203 518 HOH TIP . F 5 HOH A 216 5204 519 HOH TIP . F 5 HOH A 217 5205 520 HOH TIP . F 5 HOH A 218 5206 521 HOH TIP . F 5 HOH A 219 5207 522 HOH TIP . F 5 HOH A 220 5208 523 HOH TIP . F 5 HOH A 221 5209 524 HOH TIP . F 5 HOH A 222 5210 526 HOH TIP . F 5 HOH A 223 5211 527 HOH TIP . F 5 HOH A 224 5212 528 HOH TIP . F 5 HOH A 225 5213 529 HOH TIP . F 5 HOH A 226 5214 530 HOH TIP . F 5 HOH A 227 5215 531 HOH TIP . F 5 HOH A 228 5216 532 HOH TIP . F 5 HOH A 229 5217 533 HOH TIP . F 5 HOH A 230 5218 534 HOH TIP . F 5 HOH A 231 5219 535 HOH TIP . F 5 HOH A 232 5220 536 HOH TIP . F 5 HOH A 233 5221 537 HOH TIP . F 5 HOH A 234 5222 538 HOH TIP . F 5 HOH A 235 5223 539 HOH TIP . F 5 HOH A 236 5224 540 HOH TIP . F 5 HOH A 237 5225 541 HOH TIP . F 5 HOH A 238 5226 542 HOH TIP . F 5 HOH A 239 5227 543 HOH TIP . F 5 HOH A 240 5228 544 HOH TIP . F 5 HOH A 241 5229 545 HOH TIP . F 5 HOH A 242 5230 546 HOH TIP . F 5 HOH A 243 5231 547 HOH TIP . F 5 HOH A 244 5232 548 HOH TIP . F 5 HOH A 245 5233 549 HOH TIP . F 5 HOH A 246 5234 550 HOH TIP . F 5 HOH A 247 5235 551 HOH TIP . F 5 HOH A 248 5236 552 HOH TIP . F 5 HOH A 249 5237 554 HOH TIP . F 5 HOH A 250 5238 555 HOH TIP . F 5 HOH A 251 5239 556 HOH TIP . F 5 HOH A 252 5240 557 HOH TIP . F 5 HOH A 253 5241 559 HOH TIP . F 5 HOH A 254 5242 560 HOH TIP . F 5 HOH A 255 5243 561 HOH TIP . F 5 HOH A 256 5244 562 HOH TIP . F 5 HOH A 257 5245 563 HOH TIP . F 5 HOH A 258 5246 564 HOH TIP . F 5 HOH A 259 5247 565 HOH TIP . F 5 HOH A 260 5248 566 HOH TIP . F 5 HOH A 261 5249 567 HOH TIP . F 5 HOH A 262 5250 568 HOH TIP . F 5 HOH A 263 5251 569 HOH TIP . F 5 HOH A 264 5252 570 HOH TIP . F 5 HOH A 265 5253 571 HOH TIP . F 5 HOH A 266 5254 572 HOH TIP . F 5 HOH A 267 5255 573 HOH TIP . F 5 HOH A 268 5256 574 HOH TIP . F 5 HOH A 269 5257 575 HOH TIP . F 5 HOH A 270 5258 576 HOH TIP . F 5 HOH A 271 5259 577 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 SKM . . . E 4 36.083 40.002 86.387 1 33.08 ? O12 SKM 4733 A 1 HETATM 2 C C8 SKM . . . E 4 36.79 41.047 85.71 1 30.93 ? C8 SKM 4733 A 1 HETATM 3 C C6 SKM . . . E 4 37.134 40.599 84.26 1 30.21 ? C6 SKM 4733 A 1 HETATM 4 O O7 SKM . . . E 4 37.927 39.408 84.28 1 31.56 ? O7 SKM 4733 A 1 HETATM 5 C C5 SKM . . . E 4 37.906 41.713 83.523 1 26.82 ? C5 SKM 4733 A 1 HETATM 6 C C4 SKM . . . E 4 37.244 43.065 83.68 1 27.21 ? C4 SKM 4733 A 1 HETATM 7 C C1 SKM . . . E 4 37.598 44.124 82.712 1 25.8 ? C1 SKM 4733 A 1 HETATM 8 O O2 SKM . . . E 4 38.48 43.862 81.734 1 25.38 ? O2 SKM 4733 A 1 HETATM 9 O O3 SKM . . . E 4 37.1 45.234 82.788 1 27.34 ? O3 SKM 4733 A 1 HETATM 10 C C10 SKM . . . E 4 36.366 43.345 84.648 1 27.9 ? C10 SKM 4733 A 1 HETATM 11 C C9 SKM . . . E 4 35.918 42.351 85.701 1 30.85 ? C9 SKM 4733 A 1 HETATM 12 O O11 SKM . . . E 4 34.548 42.01 85.444 1 36.29 ? O11 SKM 4733 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #