data_2GRT # _model_server_result.job_id XAZIlBNFkiUELuy_Hk4Etg _model_server_result.datetime_utc '2024-11-16 02:55:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2grt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":479}' # _entry.id 2GRT # _exptl.entry_id 2GRT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 58.71 _cell.entry_id 2GRT _cell.length_a 119.4 _cell.length_b 84.53 _cell.length_c 63.46 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2GRT _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'B 1 1 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 163.302344 72.235068 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 41 A CYS 58 1_555 A SG CYS 46 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? disulf ? disulf2 A SG CYS 73 A CYS 90 1_555 A SG CYS 73 A CYS 90 2_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.73 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 2GRT _atom_sites.fract_transf_matrix[1][1] 0.008375 _atom_sites.fract_transf_matrix[1][2] -0.00509 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013844 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015758 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 479 479 FAD FAD . C 3 GDS A 1 481 481 GDS GDS . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . B 2 58.852 50.795 20.409 1 15 ? PA FAD 479 A 1 HETATM 2 O O1A FAD . . . B 2 59.438 51.849 19.585 1 15 ? O1A FAD 479 A 1 HETATM 3 O O2A FAD . . . B 2 59.257 49.394 20.159 1 15 ? O2A FAD 479 A 1 HETATM 4 O O5B FAD . . . B 2 57.324 50.787 19.984 1 15 ? O5B FAD 479 A 1 HETATM 5 C C5B FAD . . . B 2 56.215 51.53 20.468 1 15 ? C5B FAD 479 A 1 HETATM 6 C C4B FAD . . . B 2 54.974 51.013 19.825 1 15 ? C4B FAD 479 A 1 HETATM 7 O O4B FAD . . . B 2 53.901 51.766 20.394 1 15 ? O4B FAD 479 A 1 HETATM 8 C C3B FAD . . . B 2 54.943 51.188 18.353 1 15 ? C3B FAD 479 A 1 HETATM 9 O O3B FAD . . . B 2 54.58 50.091 17.538 1 15 ? O3B FAD 479 A 1 HETATM 10 C C2B FAD . . . B 2 54.04 52.364 18.338 1 15 ? C2B FAD 479 A 1 HETATM 11 O O2B FAD . . . B 2 53.34 52.357 17.17 1 15 ? O2B FAD 479 A 1 HETATM 12 C C1B FAD . . . B 2 53.028 52.175 19.393 1 15 ? C1B FAD 479 A 1 HETATM 13 N N9A FAD . . . B 2 52.324 53.453 19.795 1 15 ? N9A FAD 479 A 1 HETATM 14 C C8A FAD . . . B 2 52.895 54.686 19.97 1 15 ? C8A FAD 479 A 1 HETATM 15 N N7A FAD . . . B 2 52.135 55.516 20.634 1 15 ? N7A FAD 479 A 1 HETATM 16 C C5A FAD . . . B 2 50.928 54.846 20.826 1 15 ? C5A FAD 479 A 1 HETATM 17 C C6A FAD . . . B 2 49.664 55.289 21.367 1 15 ? C6A FAD 479 A 1 HETATM 18 N N6A FAD . . . B 2 49.332 56.539 21.735 1 15 ? N6A FAD 479 A 1 HETATM 19 N N1A FAD . . . B 2 48.725 54.323 21.436 1 15 ? N1A FAD 479 A 1 HETATM 20 C C2A FAD . . . B 2 48.908 53.156 20.813 1 15 ? C2A FAD 479 A 1 HETATM 21 N N3A FAD . . . B 2 49.918 52.811 20.023 1 15 ? N3A FAD 479 A 1 HETATM 22 C C4A FAD . . . B 2 50.965 53.653 20.152 1 15 ? C4A FAD 479 A 1 HETATM 23 N N1 FAD . . . B 2 68.02 48.841 19.28 1 15 ? N1 FAD 479 A 1 HETATM 24 C C2 FAD . . . B 2 68.761 47.75 19.521 1 15 ? C2 FAD 479 A 1 HETATM 25 O O2 FAD . . . B 2 68.819 47.256 20.599 1 15 ? O2 FAD 479 A 1 HETATM 26 N N3 FAD . . . B 2 69.526 47.162 18.534 1 15 ? N3 FAD 479 A 1 HETATM 27 C C4 FAD . . . B 2 69.626 47.6 17.255 1 15 ? C4 FAD 479 A 1 HETATM 28 O O4 FAD . . . B 2 70.36 46.985 16.42 1 15 ? O4 FAD 479 A 1 HETATM 29 C C4X FAD . . . B 2 68.787 48.846 16.963 1 15 ? C4X FAD 479 A 1 HETATM 30 N N5 FAD . . . B 2 68.757 49.359 15.805 1 15 ? N5 FAD 479 A 1 HETATM 31 C C5X FAD . . . B 2 67.959 50.403 15.592 1 15 ? C5X FAD 479 A 1 HETATM 32 C C6 FAD . . . B 2 68.005 50.868 14.303 1 15 ? C6 FAD 479 A 1 HETATM 33 C C7 FAD . . . B 2 67.234 51.963 13.902 1 15 ? C7 FAD 479 A 1 HETATM 34 C C7M FAD . . . B 2 67.499 52.382 13.023 1 15 ? C7M FAD 479 A 1 HETATM 35 C C8 FAD . . . B 2 66.308 52.58 14.922 1 15 ? C8 FAD 479 A 1 HETATM 36 C C8M FAD . . . B 2 65.685 53.324 14.721 1 15 ? C8M FAD 479 A 1 HETATM 37 C C9 FAD . . . B 2 66.32 52.064 16.243 1 15 ? C9 FAD 479 A 1 HETATM 38 C C9A FAD . . . B 2 67.136 50.998 16.601 1 15 ? C9A FAD 479 A 1 HETATM 39 N N10 FAD . . . B 2 67.217 50.429 17.892 1 15 ? N10 FAD 479 A 1 HETATM 40 C C10 FAD . . . B 2 68.018 49.356 18.108 1 15 ? C10 FAD 479 A 1 HETATM 41 C C1' FAD . . . B 2 66.46 50.945 19.079 1 15 ? C1' FAD 479 A 1 HETATM 42 C C2' FAD . . . B 2 65.209 50.157 19.459 1 15 ? C2' FAD 479 A 1 HETATM 43 O O2' FAD . . . B 2 64.47 49.985 18.321 1 15 ? O2' FAD 479 A 1 HETATM 44 C C3' FAD . . . B 2 64.306 50.922 20.381 1 15 ? C3' FAD 479 A 1 HETATM 45 O O3' FAD . . . B 2 65.038 51.334 21.486 1 15 ? O3' FAD 479 A 1 HETATM 46 C C4' FAD . . . B 2 63.184 50.057 20.951 1 15 ? C4' FAD 479 A 1 HETATM 47 O O4' FAD . . . B 2 62.316 49.638 19.975 1 15 ? O4' FAD 479 A 1 HETATM 48 C C5' FAD . . . B 2 62.362 50.755 22.057 1 15 ? C5' FAD 479 A 1 HETATM 49 O O5' FAD . . . B 2 61.226 50.087 22.589 1 15 ? O5' FAD 479 A 1 HETATM 50 P P FAD . . . B 2 59.874 50.681 23.179 1 15 ? P FAD 479 A 1 HETATM 51 O O1P FAD . . . B 2 59.299 49.489 23.825 1 15 ? O1P FAD 479 A 1 HETATM 52 O O2P FAD . . . B 2 59.922 51.887 24.09 1 15 ? O2P FAD 479 A 1 HETATM 53 O O3P FAD . . . B 2 59.107 51.124 21.871 1 15 ? O3P FAD 479 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 53 #