data_2GRT # _model_server_result.job_id ngE7w7XqAg3W2aPsb4BjrQ _model_server_result.datetime_utc '2024-11-16 02:45:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2grt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":481}' # _entry.id 2GRT # _exptl.entry_id 2GRT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 612.631 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OXIDIZED GLUTATHIONE DISULFIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 58.71 _cell.entry_id 2GRT _cell.length_a 119.4 _cell.length_b 84.53 _cell.length_c 63.46 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2GRT _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'B 1 1 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 163.302344 72.235068 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 41 A CYS 58 1_555 A SG CYS 46 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? disulf ? disulf2 A SG CYS 73 A CYS 90 1_555 A SG CYS 73 A CYS 90 2_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.73 ? # _chem_comp.formula 'C20 H32 N6 O12 S2' _chem_comp.formula_weight 612.631 _chem_comp.id GDS _chem_comp.mon_nstd_flag . _chem_comp.name 'OXIDIZED GLUTATHIONE DISULFIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA1 GDS sing 174 n n N1 HN11 GDS sing 175 n n N1 HN12 GDS sing 176 n n CA1 C1 GDS sing 177 n n CA1 CB1 GDS sing 178 n n CA1 HA1 GDS sing 179 n n C1 OE1 GDS doub 180 n n C1 OE2 GDS sing 181 n n OE2 HO2 GDS sing 182 n n CB1 CG1 GDS sing 183 n n CB1 HB11 GDS sing 184 n n CB1 HB12 GDS sing 185 n n CG1 CD1 GDS sing 186 n n CG1 HG11 GDS sing 187 n n CG1 HG12 GDS sing 188 n n CD1 O1 GDS doub 189 n n CD1 N2 GDS sing 190 n n N2 CA2 GDS sing 191 n n N2 HN2 GDS sing 192 n n CA2 C2 GDS sing 193 n n CA2 CB2 GDS sing 194 n n CA2 HA2 GDS sing 195 n n C2 O2 GDS doub 196 n n C2 N3 GDS sing 197 n n CB2 SG2 GDS sing 198 n n CB2 HB21 GDS sing 199 n n CB2 HB22 GDS sing 200 n n SG2 SG5 GDS sing 201 n n N3 CA3 GDS sing 202 n n N3 HN3 GDS sing 203 n n CA3 C3 GDS sing 204 n n CA3 HA31 GDS sing 205 n n CA3 HA32 GDS sing 206 n n C3 OE3 GDS doub 207 n n C3 OE4 GDS sing 208 n n OE4 HO4 GDS sing 209 n n N4 CA4 GDS sing 210 n n N4 C5 GDS sing 211 n n N4 HN4 GDS sing 212 n n CA4 C4 GDS sing 213 n n CA4 HA41 GDS sing 214 n n CA4 HA42 GDS sing 215 n n C4 OE5 GDS doub 216 n n C4 OE6 GDS sing 217 n n OE6 HO6 GDS sing 218 n n C5 O5 GDS doub 219 n n C5 CA5 GDS sing 220 n n CA5 N5 GDS sing 221 n n CA5 CB5 GDS sing 222 n n CA5 HA5 GDS sing 223 n n N5 CD6 GDS sing 224 n n N5 HN5 GDS sing 225 n n CB5 SG5 GDS sing 226 n n CB5 HB51 GDS sing 227 n n CB5 HB52 GDS sing 228 n n CA6 C6 GDS sing 229 n n CA6 N6 GDS sing 230 n n CA6 CB6 GDS sing 231 n n CA6 HA6 GDS sing 232 n n C6 OE7 GDS doub 233 n n C6 OE8 GDS sing 234 n n OE8 HO8 GDS sing 235 n n N6 HN61 GDS sing 236 n n N6 HN62 GDS sing 237 n n CB6 CG6 GDS sing 238 n n CB6 HB61 GDS sing 239 n n CB6 HB62 GDS sing 240 n n CG6 CD6 GDS sing 241 n n CG6 HG61 GDS sing 242 n n CG6 HG62 GDS sing 243 n n CD6 O6 GDS doub 244 n n # _atom_sites.entry_id 2GRT _atom_sites.fract_transf_matrix[1][1] 0.008375 _atom_sites.fract_transf_matrix[1][2] -0.00509 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013844 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015758 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 479 479 FAD FAD . C 3 GDS A 1 481 481 GDS GDS . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GDS . . . C 3 65.119 36.708 23.105 1 24.68 ? N1 GDS 481 A 1 HETATM 2 C CA1 GDS . . . C 3 65.667 37.98 22.521 1 27.58 ? CA1 GDS 481 A 1 HETATM 3 C C1 GDS . . . C 3 65.429 39.221 23.442 1 23.27 ? C1 GDS 481 A 1 HETATM 4 O OE1 GDS . . . C 3 66.154 40.25 23.268 1 19.98 ? OE1 GDS 481 A 1 HETATM 5 O OE2 GDS . . . C 3 64.524 39.129 24.338 1 26.95 ? OE2 GDS 481 A 1 HETATM 6 C CB1 GDS . . . C 3 65.152 38.194 21.062 1 21.19 ? CB1 GDS 481 A 1 HETATM 7 C CG1 GDS . . . C 3 63.701 37.681 20.78 1 17.62 ? CG1 GDS 481 A 1 HETATM 8 C CD1 GDS . . . C 3 62.672 38.814 20.543 1 22.13 ? CD1 GDS 481 A 1 HETATM 9 O O1 GDS . . . C 3 61.452 38.541 20.487 1 27.75 ? O1 GDS 481 A 1 HETATM 10 N N2 GDS . . . C 3 63.212 39.959 20.1 1 26.23 ? N2 GDS 481 A 1 HETATM 11 C CA2 GDS . . . C 3 62.49 41.218 19.758 1 20.82 ? CA2 GDS 481 A 1 HETATM 12 C C2 GDS . . . C 3 61.339 41.758 20.63 1 24.96 ? C2 GDS 481 A 1 HETATM 13 O O2 GDS . . . C 3 60.812 42.848 20.327 1 29.73 ? O2 GDS 481 A 1 HETATM 14 C CB2 GDS . . . C 3 61.997 41.201 18.29 1 28.6 ? CB2 GDS 481 A 1 HETATM 15 S SG2 GDS . . . C 3 63.198 40.881 16.938 1 25.74 ? SG2 GDS 481 A 1 HETATM 16 N N3 GDS . . . C 3 60.817 40.917 21.525 1 24.47 ? N3 GDS 481 A 1 HETATM 17 C CA3 GDS . . . C 3 59.709 41.31 22.385 1 22.02 ? CA3 GDS 481 A 1 HETATM 18 C C3 GDS . . . C 3 59.731 40.644 23.753 1 29.98 ? C3 GDS 481 A 1 HETATM 19 O OE3 GDS . . . C 3 59.572 41.388 24.733 1 32.07 ? OE3 GDS 481 A 1 HETATM 20 O OE4 GDS . . . C 3 59.911 39.405 23.856 1 33.43 ? OE4 GDS 481 A 1 HETATM 21 N N4 GDS . . . C 3 61.155 35.599 17.354 1 33.19 ? N4 GDS 481 A 1 HETATM 22 C CA4 GDS . . . C 3 59.895 34.914 17.23 1 42.7 ? CA4 GDS 481 A 1 HETATM 23 C C4 GDS . . . C 3 59.646 34.251 18.564 1 54.7 ? C4 GDS 481 A 1 HETATM 24 O OE5 GDS . . . C 3 59.569 32.999 18.602 1 63.86 ? OE5 GDS 481 A 1 HETATM 25 O OE6 GDS . . . C 3 59.57 34.989 19.579 1 56.88 ? OE6 GDS 481 A 1 HETATM 26 C C5 GDS . . . C 3 62.004 35.659 16.34 1 31.69 ? C5 GDS 481 A 1 HETATM 27 O O5 GDS . . . C 3 62.042 34.825 15.428 1 40.49 ? O5 GDS 481 A 1 HETATM 28 C CA5 GDS . . . C 3 63.252 36.404 16.72 1 26.42 ? CA5 GDS 481 A 1 HETATM 29 N N5 GDS . . . C 3 64.415 35.56 16.378 1 23.77 ? N5 GDS 481 A 1 HETATM 30 C CB5 GDS . . . C 3 63.267 37.846 16.128 1 26.29 ? CB5 GDS 481 A 1 HETATM 31 S SG5 GDS . . . C 3 64.005 39.032 17.314 1 43.57 ? SG5 GDS 481 A 1 HETATM 32 C CA6 GDS . . . C 3 68.697 35.063 17.021 1 25.26 ? CA6 GDS 481 A 1 HETATM 33 C C6 GDS . . . C 3 69.028 36.118 16.011 1 26.65 ? C6 GDS 481 A 1 HETATM 34 O OE7 GDS . . . C 3 68.869 37.303 16.346 1 29 ? OE7 GDS 481 A 1 HETATM 35 O OE8 GDS . . . C 3 69.48 35.752 14.916 1 26.22 ? OE8 GDS 481 A 1 HETATM 36 N N6 GDS . . . C 3 68.896 35.694 18.337 1 13.6 ? N6 GDS 481 A 1 HETATM 37 C CB6 GDS . . . C 3 67.26 34.523 16.88 1 21.28 ? CB6 GDS 481 A 1 HETATM 38 C CG6 GDS . . . C 3 66.533 34.794 15.556 1 22.26 ? CG6 GDS 481 A 1 HETATM 39 C CD6 GDS . . . C 3 65.502 35.93 15.696 1 26.67 ? CD6 GDS 481 A 1 HETATM 40 O O6 GDS . . . C 3 65.612 37.031 15.078 1 25.61 ? O6 GDS 481 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 40 #