data_2GRX # _model_server_result.job_id js0psM0gKXzmz7c9IdoWWg _model_server_result.datetime_utc '2024-11-18 04:23:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2grx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":902}' # _entry.id 2GRX # _exptl.entry_id 2GRX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 244.37 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-HYDROXY-TETRADECANOIC ACID' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 118.86 _cell.angle_gamma 90 _cell.entry_id 2GRX _cell.length_a 234.32 _cell.length_b 91.84 _cell.length_c 138.51 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2GRX _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,G,H,I,J,K,L,M,N,O 1 1 B,D,F,P,Q,R,S,T,U,V,W,X,Y 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 Q N N ? 5 R N N ? 5 S N N ? 5 T N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 GCN GCN C1 O1 . O6 HO6 . sing 2 ? 3 3 2 KDO GCN C2 O2 . O6 HO6 . sing 3 ? 3 4 3 KDO KDO C2 O2 . O4 HO4 . sing 4 ? 3 5 3 GMH KDO C1 O1 . O5 HO5 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E GCN 1 E 1 GCN A 920 GCN 3 n E GCN 2 E 2 GCN A 921 GCN 3 n E KDO 3 E 3 KDO A 970 KDO 3 n E KDO 4 E 4 KDO A 971 KDO 3 n E GMH 5 E 5 GMH A 960 GMH 3 n F GCN 1 F 1 GCN B 920 GCN 3 n F GCN 2 F 2 GCN B 921 GCN 3 n F KDO 3 F 3 KDO B 970 KDO 3 n F KDO 4 F 4 KDO B 971 KDO 3 n F GMH 5 F 5 GMH B 960 GMH # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 318 A CYS 318 1_555 A SG CYS 329 A CYS 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 703 A CYS 703 1_555 A SG CYS 709 A CYS 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 B SG CYS 318 B CYS 318 1_555 B SG CYS 329 B CYS 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 703 B CYS 703 1_555 B SG CYS 709 B CYS 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 H C1 FTT . A FTT 900 1_555 E N2 GCN . E GCN 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 J O3 FTT . A FTT 902 1_555 M C1 DAO . A DAO 930 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 0.894 ? covale ? covale3 J C1 FTT . A FTT 902 1_555 E N2 GCN . E GCN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 G P PO4 . A PO4 950 1_555 E O4 GCN . E GCN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.503 ? covale ? covale5 N P EAP . A EAP 980 1_555 E O4 GMH . E GMH 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.498 ? covale ? covale6 Q C1 FTT . B FTT 900 1_555 F N2 GCN . F GCN 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale7 S O3 FTT . B FTT 902 1_555 V C1 DAO . B DAO 930 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 0.894 ? covale ? covale8 S C1 FTT . B FTT 902 1_555 F N2 GCN . F GCN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 T O3 FTT . B FTT 903 1_555 W C1 MYR . B MYR 940 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? covale ? covale10 P P PO4 . B PO4 950 1_555 F O4 GCN . F GCN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.503 ? covale ? covale11 X P EAP . B EAP 980 1_555 F O4 GMH . F GMH 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.499 ? covale ? covale12 E O6 GCN . E GCN 1 1_555 E C1 GCN . E GCN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.39 ? covale ? covale13 E O6 GCN . E GCN 2 1_555 E C2 KDO . E KDO 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.384 ? covale ? covale14 E O4 KDO . E KDO 3 1_555 E C2 KDO . E KDO 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 ? covale ? covale15 E O5 KDO . E KDO 3 1_555 E C1 GMH . E GMH 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.402 ? covale ? covale16 F O6 GCN . F GCN 1 1_555 F C1 GCN . F GCN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.391 ? covale ? covale17 F O6 GCN . F GCN 2 1_555 F C2 KDO . F KDO 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.385 ? covale ? covale18 F O4 KDO . F KDO 3 1_555 F C2 KDO . F KDO 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 ? covale ? covale19 F O5 KDO . F KDO 3 1_555 F C1 GMH . F GMH 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.402 ? # _chem_comp.formula 'C14 H28 O3' _chem_comp.formula_weight 244.37 _chem_comp.id FTT _chem_comp.mon_nstd_flag . _chem_comp.name '3-HYDROXY-TETRADECANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '3-HYDROXY-MYRISTIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 FTT sing 241 n n C1 O2 FTT doub 242 n n C1 O1 FTT sing 243 n n C2 C3 FTT sing 244 n n C2 H21 FTT sing 245 n n C2 H22 FTT sing 246 n n C3 C4 FTT sing 247 n n C3 O3 FTT sing 248 n n C3 H3 FTT sing 249 n n C4 C5 FTT sing 250 n n C4 H41 FTT sing 251 n n C4 H42 FTT sing 252 n n C5 C6 FTT sing 253 n n C5 H51 FTT sing 254 n n C5 H52 FTT sing 255 n n C6 C7 FTT sing 256 n n C6 H61 FTT sing 257 n n C6 H62 FTT sing 258 n n C7 C8 FTT sing 259 n n C7 H71 FTT sing 260 n n C7 H72 FTT sing 261 n n C8 C9 FTT sing 262 n n C8 H81 FTT sing 263 n n C8 H82 FTT sing 264 n n C9 C10 FTT sing 265 n n C9 H91 FTT sing 266 n n C9 H92 FTT sing 267 n n C10 C11 FTT sing 268 n n C10 H101 FTT sing 269 n n C10 H102 FTT sing 270 n n C11 C12 FTT sing 271 n n C11 H111 FTT sing 272 n n C11 H112 FTT sing 273 n n C12 C13 FTT sing 274 n n C12 H121 FTT sing 275 n n C12 H122 FTT sing 276 n n C13 C14 FTT sing 277 n n C13 H131 FTT sing 278 n n C13 H132 FTT sing 279 n n C14 H141 FTT sing 280 n n C14 H142 FTT sing 281 n n C14 H143 FTT sing 282 n n O3 HO3 FTT sing 283 n n O1 HO1 FTT sing 284 n n # _atom_sites.entry_id 2GRX _atom_sites.fract_transf_matrix[1][1] 0.004268 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002352 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010889 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008244 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 PO4 A 1 950 950 PO4 PO4 . H 5 FTT A 1 900 900 FTT FTT . I 5 FTT A 1 901 901 FTT FTT . J 5 FTT A 1 902 902 FTT FTT . K 5 FTT A 1 903 903 FTT FTT . L 6 DPO A 1 910 910 DPO DPO . M 7 DAO A 1 930 930 DAO DAO . N 8 EAP A 1 980 980 EAP EAP . O 9 FCI A 1 1050 1050 FCI FCI . P 4 PO4 B 1 950 950 PO4 PO4 . Q 5 FTT B 1 900 900 FTT FTT . R 5 FTT B 1 901 901 FTT FTT . S 5 FTT B 1 902 902 FTT FTT . T 5 FTT B 1 903 903 FTT FTT . U 6 DPO B 1 910 910 DPO DPO . V 7 DAO B 1 930 930 DAO DAO . W 10 MYR B 1 940 940 MYR MYR . X 8 EAP B 1 980 980 EAP EAP . Y 9 FCI B 1 1050 1050 FCI FCI . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FTT . . . J 5 39.263 8.99 34.021 1 70.51 ? C1 FTT 902 A 1 HETATM 2 C C2 FTT . . . J 5 38.1 9.953 34.082 1 77.24 ? C2 FTT 902 A 1 HETATM 3 C C3 FTT . . . J 5 37.527 10.265 32.698 1 79.48 ? C3 FTT 902 A 1 HETATM 4 C C4 FTT . . . J 5 37.075 8.96 32.028 1 74.9 ? C4 FTT 902 A 1 HETATM 5 C C5 FTT . . . J 5 35.994 9.075 30.964 1 64.63 ? C5 FTT 902 A 1 HETATM 6 C C6 FTT . . . J 5 36.522 9.338 29.571 1 66.07 ? C6 FTT 902 A 1 HETATM 7 C C7 FTT . . . J 5 35.41 9.063 28.572 1 71.66 ? C7 FTT 902 A 1 HETATM 8 C C8 FTT . . . J 5 35.681 9.642 27.198 1 66.37 ? C8 FTT 902 A 1 HETATM 9 C C9 FTT . . . J 5 34.604 9.189 26.231 1 63.48 ? C9 FTT 902 A 1 HETATM 10 C C10 FTT . . . J 5 34.81 9.756 24.841 1 68.85 ? C10 FTT 902 A 1 HETATM 11 C C11 FTT . . . J 5 33.838 9.134 23.848 1 71.38 ? C11 FTT 902 A 1 HETATM 12 C C12 FTT . . . J 5 33.907 9.827 22.499 1 70.75 ? C12 FTT 902 A 1 HETATM 13 C C13 FTT . . . J 5 32.917 9.222 21.524 1 69.18 ? C13 FTT 902 A 1 HETATM 14 C C14 FTT . . . J 5 32.854 10.042 20.268 1 78.17 ? C14 FTT 902 A 1 HETATM 15 O O2 FTT . . . J 5 40.277 9.293 33.402 1 72.17 ? O2 FTT 902 A 1 HETATM 16 O O3 FTT . . . J 5 36.467 11.189 32.799 1 74.45 ? O3 FTT 902 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 491 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 16 #