data_2GSQ # _model_server_result.job_id wy5SBubvnSSqXuRfGKDldQ _model_server_result.datetime_utc '2024-10-14 04:23:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2gsq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":204}' # _entry.id 2GSQ # _exptl.entry_id 2GSQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.343 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-(3-IODOBENZYL)GLUTATHIONE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2GSQ _cell.length_a 73.15 _cell.length_b 73.15 _cell.length_c 94.88 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2GSQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C17 H22 I N3 O6 S' _chem_comp.formula_weight 523.343 _chem_comp.id GBI _chem_comp.mon_nstd_flag . _chem_comp.name S-(3-IODOBENZYL)GLUTATHIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA1 GBI sing 83 n n N1 HN11 GBI sing 84 n n N1 HN12 GBI sing 85 n n CA1 C1 GBI sing 86 n n CA1 CB1 GBI sing 87 n n CA1 HA1 GBI sing 88 n n C1 O11 GBI doub 89 n n C1 O12 GBI sing 90 n n O12 HO1 GBI sing 91 n n CB1 CG1 GBI sing 92 n n CB1 HB11 GBI sing 93 n n CB1 HB12 GBI sing 94 n n CG1 CD1 GBI sing 95 n n CG1 HG11 GBI sing 96 n n CG1 HG12 GBI sing 97 n n CD1 OE1 GBI doub 98 n n CD1 N2 GBI sing 99 n n N2 CA2 GBI sing 100 n n N2 HN2 GBI sing 101 n n CA2 C2 GBI sing 102 n n CA2 CB2 GBI sing 103 n n CA2 HA2 GBI sing 104 n n C2 O2 GBI doub 105 n n C2 N3 GBI sing 106 n n CB2 SG2 GBI sing 107 n n CB2 HB21 GBI sing 108 n n CB2 HB22 GBI sing 109 n n SG2 C' GBI sing 110 n n N3 CA3 GBI sing 111 n n N3 HN3 GBI sing 112 n n CA3 C3 GBI sing 113 n n CA3 HA31 GBI sing 114 n n CA3 HA32 GBI sing 115 n n C3 O31 GBI doub 116 n n C3 O32 GBI sing 117 n n O32 HO3 GBI sing 118 n n C' C1' GBI sing 119 n n C' "H'1" GBI sing 120 n n C' "H'2" GBI sing 121 n n C1' C2' GBI doub 122 n y C1' C6' GBI sing 123 n y C2' C3' GBI sing 124 n y C2' H2' GBI sing 125 n n C3' I3' GBI sing 126 n n C3' C4' GBI doub 127 n y C4' C5' GBI sing 128 n y C4' H4' GBI sing 129 n n C5' C6' GBI doub 130 n y C5' H5' GBI sing 131 n n C6' H6' GBI sing 132 n n # _atom_sites.entry_id 2GSQ _atom_sites.fract_transf_matrix[1][1] 0.013671 _atom_sites.fract_transf_matrix[1][2] 0.007893 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015785 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01054 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 300 300 SO4 SO4 . C 3 GBI A 1 203 203 GBI GBI . D 3 GBI A 1 204 204 GBI GBI . E 4 HOH A 1 301 301 HOH HOH . E 4 HOH A 2 302 302 HOH HOH . E 4 HOH A 3 303 303 HOH HOH . E 4 HOH A 4 304 304 HOH HOH . E 4 HOH A 5 305 305 HOH HOH . E 4 HOH A 6 306 306 HOH HOH . E 4 HOH A 7 307 307 HOH HOH . E 4 HOH A 8 308 308 HOH HOH . E 4 HOH A 9 309 309 HOH HOH . E 4 HOH A 10 310 310 HOH HOH . E 4 HOH A 11 311 311 HOH HOH . E 4 HOH A 12 312 312 HOH HOH . E 4 HOH A 13 313 313 HOH HOH . E 4 HOH A 14 314 314 HOH HOH . E 4 HOH A 15 315 315 HOH HOH . E 4 HOH A 16 316 316 HOH HOH . E 4 HOH A 17 317 317 HOH HOH . E 4 HOH A 18 318 318 HOH HOH . E 4 HOH A 19 319 319 HOH HOH . E 4 HOH A 20 320 320 HOH HOH . E 4 HOH A 21 321 321 HOH HOH . E 4 HOH A 22 322 322 HOH HOH . E 4 HOH A 23 323 323 HOH HOH . E 4 HOH A 24 324 324 HOH HOH . E 4 HOH A 25 325 325 HOH HOH . E 4 HOH A 26 326 326 HOH HOH . E 4 HOH A 27 327 327 HOH HOH . E 4 HOH A 28 328 328 HOH HOH . E 4 HOH A 29 329 329 HOH HOH . E 4 HOH A 30 330 330 HOH HOH . E 4 HOH A 31 331 331 HOH HOH . E 4 HOH A 32 332 332 HOH HOH . E 4 HOH A 33 333 333 HOH HOH . E 4 HOH A 34 334 334 HOH HOH . E 4 HOH A 35 335 335 HOH HOH . E 4 HOH A 36 336 336 HOH HOH . E 4 HOH A 37 337 337 HOH HOH . E 4 HOH A 38 338 338 HOH HOH . E 4 HOH A 39 339 339 HOH HOH . E 4 HOH A 40 340 340 HOH HOH . E 4 HOH A 41 341 341 HOH HOH . E 4 HOH A 42 342 342 HOH HOH . E 4 HOH A 43 343 343 HOH HOH . E 4 HOH A 44 344 344 HOH HOH . E 4 HOH A 45 345 345 HOH HOH . E 4 HOH A 46 346 346 HOH HOH . E 4 HOH A 47 347 347 HOH HOH . E 4 HOH A 48 348 348 HOH HOH . E 4 HOH A 49 349 349 HOH HOH . E 4 HOH A 50 350 350 HOH HOH . E 4 HOH A 51 351 351 HOH HOH . E 4 HOH A 52 352 352 HOH HOH . E 4 HOH A 53 353 353 HOH HOH . E 4 HOH A 54 354 354 HOH HOH . E 4 HOH A 55 355 355 HOH HOH . E 4 HOH A 56 356 356 HOH HOH . E 4 HOH A 57 357 357 HOH HOH . E 4 HOH A 58 358 358 HOH HOH . E 4 HOH A 59 359 359 HOH HOH . E 4 HOH A 60 360 360 HOH HOH . E 4 HOH A 61 361 361 HOH HOH . E 4 HOH A 62 362 362 HOH HOH . E 4 HOH A 63 363 363 HOH HOH . E 4 HOH A 64 364 364 HOH HOH . E 4 HOH A 65 365 365 HOH HOH . E 4 HOH A 66 366 366 HOH HOH . E 4 HOH A 67 367 367 HOH HOH . E 4 HOH A 68 368 368 HOH HOH . E 4 HOH A 69 369 369 HOH HOH . E 4 HOH A 70 370 370 HOH HOH . E 4 HOH A 71 371 371 HOH HOH . E 4 HOH A 72 372 372 HOH HOH . E 4 HOH A 73 373 373 HOH HOH . E 4 HOH A 74 374 374 HOH HOH . E 4 HOH A 75 375 375 HOH HOH . E 4 HOH A 76 376 376 HOH HOH . E 4 HOH A 77 377 377 HOH HOH . E 4 HOH A 78 378 378 HOH HOH . E 4 HOH A 79 379 379 HOH HOH . E 4 HOH A 80 380 380 HOH HOH . E 4 HOH A 81 381 381 HOH HOH . E 4 HOH A 82 382 382 HOH HOH . E 4 HOH A 83 383 383 HOH HOH . E 4 HOH A 84 384 384 HOH HOH . E 4 HOH A 85 385 385 HOH HOH . E 4 HOH A 86 386 386 HOH HOH . E 4 HOH A 87 387 387 HOH HOH . E 4 HOH A 88 388 388 HOH HOH . E 4 HOH A 89 389 389 HOH HOH . E 4 HOH A 90 390 390 HOH HOH . E 4 HOH A 91 391 391 HOH HOH . E 4 HOH A 92 392 392 HOH HOH . E 4 HOH A 93 393 393 HOH HOH . E 4 HOH A 94 394 394 HOH HOH . E 4 HOH A 95 395 395 HOH HOH . E 4 HOH A 96 396 396 HOH HOH . E 4 HOH A 97 397 397 HOH HOH . E 4 HOH A 98 398 398 HOH HOH . E 4 HOH A 99 399 399 HOH HOH . E 4 HOH A 100 400 400 HOH HOH . E 4 HOH A 101 401 401 HOH HOH . E 4 HOH A 102 402 402 HOH HOH . E 4 HOH A 103 403 403 HOH HOH . E 4 HOH A 104 404 404 HOH HOH . E 4 HOH A 105 405 405 HOH HOH . E 4 HOH A 106 406 406 HOH HOH . E 4 HOH A 107 407 407 HOH HOH . E 4 HOH A 108 408 408 HOH HOH . E 4 HOH A 109 409 409 HOH HOH . E 4 HOH A 110 410 410 HOH HOH . E 4 HOH A 111 411 411 HOH HOH . E 4 HOH A 112 412 412 HOH HOH . E 4 HOH A 113 413 413 HOH HOH . E 4 HOH A 114 414 414 HOH HOH . E 4 HOH A 115 415 415 HOH HOH . E 4 HOH A 116 416 416 HOH HOH . E 4 HOH A 117 417 417 HOH HOH . E 4 HOH A 118 418 418 HOH HOH . E 4 HOH A 119 419 419 HOH HOH . E 4 HOH A 120 420 420 HOH HOH . E 4 HOH A 121 421 421 HOH HOH . E 4 HOH A 122 422 422 HOH HOH . E 4 HOH A 123 423 423 HOH HOH . E 4 HOH A 124 424 424 HOH HOH . E 4 HOH A 125 425 425 HOH HOH . E 4 HOH A 126 426 426 HOH HOH . E 4 HOH A 127 427 427 HOH HOH . E 4 HOH A 128 428 428 HOH HOH . E 4 HOH A 129 429 429 HOH HOH . E 4 HOH A 130 430 430 HOH HOH . E 4 HOH A 131 431 431 HOH HOH . E 4 HOH A 132 432 432 HOH HOH . E 4 HOH A 133 433 433 HOH HOH . E 4 HOH A 134 434 434 HOH HOH . E 4 HOH A 135 435 435 HOH HOH . E 4 HOH A 136 436 436 HOH HOH . E 4 HOH A 137 437 437 HOH HOH . E 4 HOH A 138 438 438 HOH HOH . E 4 HOH A 139 439 439 HOH HOH . E 4 HOH A 140 440 440 HOH HOH . E 4 HOH A 141 441 441 HOH HOH . E 4 HOH A 142 442 442 HOH HOH . E 4 HOH A 143 443 443 HOH HOH . E 4 HOH A 144 444 444 HOH HOH . E 4 HOH A 145 445 445 HOH HOH . E 4 HOH A 146 446 446 HOH HOH . E 4 HOH A 147 447 447 HOH HOH . E 4 HOH A 148 448 448 HOH HOH . E 4 HOH A 149 449 449 HOH HOH . E 4 HOH A 150 450 450 HOH HOH . E 4 HOH A 151 451 451 HOH HOH . E 4 HOH A 152 452 452 HOH HOH . E 4 HOH A 153 453 453 HOH HOH . E 4 HOH A 154 454 454 HOH HOH . E 4 HOH A 155 455 455 HOH HOH . E 4 HOH A 156 456 456 HOH HOH . E 4 HOH A 157 457 457 HOH HOH . E 4 HOH A 158 458 458 HOH HOH . E 4 HOH A 159 459 459 HOH HOH . E 4 HOH A 160 460 460 HOH HOH . E 4 HOH A 161 461 461 HOH HOH . E 4 HOH A 162 462 462 HOH HOH . E 4 HOH A 163 463 463 HOH HOH . E 4 HOH A 164 464 464 HOH HOH . E 4 HOH A 165 465 465 HOH HOH . E 4 HOH A 166 466 466 HOH HOH . E 4 HOH A 167 467 467 HOH HOH . E 4 HOH A 168 468 468 HOH HOH . E 4 HOH A 169 469 469 HOH HOH . E 4 HOH A 170 470 470 HOH HOH . E 4 HOH A 171 471 471 HOH HOH . E 4 HOH A 172 472 472 HOH HOH . E 4 HOH A 173 473 473 HOH HOH . E 4 HOH A 174 474 474 HOH HOH . E 4 HOH A 175 475 475 HOH HOH . E 4 HOH A 176 476 476 HOH HOH . E 4 HOH A 177 477 477 HOH HOH . E 4 HOH A 178 478 478 HOH HOH . E 4 HOH A 179 479 479 HOH HOH . E 4 HOH A 180 480 480 HOH HOH . E 4 HOH A 181 481 481 HOH HOH . E 4 HOH A 182 482 482 HOH HOH . E 4 HOH A 183 483 483 HOH HOH . E 4 HOH A 184 484 484 HOH HOH . E 4 HOH A 185 485 485 HOH HOH . E 4 HOH A 186 486 486 HOH HOH . E 4 HOH A 187 487 487 HOH HOH . E 4 HOH A 188 488 488 HOH HOH . E 4 HOH A 189 489 489 HOH HOH . E 4 HOH A 190 490 490 HOH HOH . E 4 HOH A 191 491 491 HOH HOH . E 4 HOH A 192 492 492 HOH HOH . E 4 HOH A 193 493 493 HOH HOH . E 4 HOH A 194 494 494 HOH HOH . E 4 HOH A 195 495 495 HOH HOH . E 4 HOH A 196 496 496 HOH HOH . E 4 HOH A 197 497 497 HOH HOH . E 4 HOH A 198 498 498 HOH HOH . E 4 HOH A 199 499 499 HOH HOH . E 4 HOH A 200 500 500 HOH HOH . E 4 HOH A 201 501 501 HOH HOH . E 4 HOH A 202 502 502 HOH HOH . E 4 HOH A 203 503 503 HOH HOH . E 4 HOH A 204 504 504 HOH HOH . E 4 HOH A 205 505 505 HOH HOH . E 4 HOH A 206 506 506 HOH HOH . E 4 HOH A 207 507 507 HOH HOH . E 4 HOH A 208 508 508 HOH HOH . E 4 HOH A 209 509 509 HOH HOH . E 4 HOH A 210 510 510 HOH HOH . E 4 HOH A 211 511 511 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GBI . . . D 3 4.877 22.951 5.68 0.5 34.3 ? N1 GBI 204 A 1 HETATM 2 C CA1 GBI . . . D 3 6.113 22.733 6.425 0.5 34.42 ? CA1 GBI 204 A 1 HETATM 3 C C1 GBI . . . D 3 6.538 24.038 7.082 0.5 34.77 ? C1 GBI 204 A 1 HETATM 4 O O11 GBI . . . D 3 6.522 25.05 6.367 0.5 35.05 ? O11 GBI 204 A 1 HETATM 5 O O12 GBI . . . D 3 6.85 23.96 8.283 0.5 34.8 ? O12 GBI 204 A 1 HETATM 6 C CB1 GBI . . . D 3 7.198 22.239 5.517 0.5 34.28 ? CB1 GBI 204 A 1 HETATM 7 C CG1 GBI . . . D 3 7.143 22.888 4.156 0.5 33.98 ? CG1 GBI 204 A 1 HETATM 8 C CD1 GBI . . . D 3 8.437 22.759 3.41 0.5 33.99 ? CD1 GBI 204 A 1 HETATM 9 O OE1 GBI . . . D 3 8.749 21.714 2.829 0.5 34.34 ? OE1 GBI 204 A 1 HETATM 10 N N2 GBI . . . D 3 9.241 23.829 3.498 0.5 33.96 ? N2 GBI 204 A 1 HETATM 11 C CA2 GBI . . . D 3 10.675 23.677 3.668 0.5 34.04 ? CA2 GBI 204 A 1 HETATM 12 C C2 GBI . . . D 3 11.263 24.846 4.446 0.5 33.82 ? C2 GBI 204 A 1 HETATM 13 O O2 GBI . . . D 3 10.536 25.401 5.302 0.5 33.66 ? O2 GBI 204 A 1 HETATM 14 C CB2 GBI . . . D 3 11.306 23.45 2.333 0.5 34.51 ? CB2 GBI 204 A 1 HETATM 15 S SG2 GBI . . . D 3 12.72 22.326 2.498 0.5 35.29 ? SG2 GBI 204 A 1 HETATM 16 N N3 GBI . . . D 3 12.535 25.207 4.244 0.5 33.48 ? N3 GBI 204 A 1 HETATM 17 C CA3 GBI . . . D 3 13.305 26.076 5.132 0.5 33.56 ? CA3 GBI 204 A 1 HETATM 18 C C3 GBI . . . D 3 14.226 27.092 4.432 0.5 33.65 ? C3 GBI 204 A 1 HETATM 19 O O31 GBI . . . D 3 15.452 26.89 4.334 0.5 33.62 ? O31 GBI 204 A 1 HETATM 20 O O32 GBI . . . D 3 13.742 28.132 3.947 0.5 33.72 ? O32 GBI 204 A 1 HETATM 21 C C' GBI . . . D 3 11.925 20.953 1.661 0.5 35.47 ? C' GBI 204 A 1 HETATM 22 C C1' GBI . . . D 3 12.117 20.837 0.169 0.5 36.17 ? C1' GBI 204 A 1 HETATM 23 C C2' GBI . . . D 3 13.182 21.418 -0.489 0.5 36.83 ? C2' GBI 204 A 1 HETATM 24 C C3' GBI . . . D 3 13.339 21.214 -1.849 0.5 37.49 ? C3' GBI 204 A 1 HETATM 25 I I3' GBI . . . D 3 14.967 22.045 -2.978 0.5 40.07 ? I3' GBI 204 A 1 HETATM 26 C C4' GBI . . . D 3 12.434 20.466 -2.57 0.5 37.27 ? C4' GBI 204 A 1 HETATM 27 C C5' GBI . . . D 3 11.362 19.917 -1.911 0.5 36.59 ? C5' GBI 204 A 1 HETATM 28 C C6' GBI . . . D 3 11.2 20.091 -0.551 0.5 36.29 ? C6' GBI 204 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #