data_2GSW # _model_server_result.job_id m1R82iys2VBH-7fTE6Ujxw _model_server_result.datetime_utc '2024-11-16 08:42:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2gsw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 2GSW # _exptl.entry_id 2GSW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.34 _cell.angle_gamma 90 _cell.entry_id 2GSW _cell.length_a 52.444 _cell.length_b 99.296 _cell.length_c 69.436 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2GSW _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,G,I,K 1 1 B,D,F,H,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 3 A MSE 3 1_555 A N LEU 4 A LEU 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C GLY 77 A GLY 77 1_555 A N MSE 78 A MSE 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale3 A C MSE 78 A MSE 78 1_555 A N SER 79 A SER 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale4 A C ASN 117 A ASN 117 1_555 A N MSE 118 A MSE 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 A C MSE 118 A MSE 118 1_555 A N ARG 119 A ARG 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale6 A C VAL 121 A VAL 121 1_555 A N MSE 122 A MSE 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale7 A C MSE 122 A MSE 122 1_555 A N ARG 123 A ARG 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale8 A C SER 164 A SER 164 1_555 A N MSE 165 A MSE 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 A C MSE 165 A MSE 165 1_555 A N PHE 166 A PHE 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 B C MSE 3 B MSE 3 1_555 B N LEU 4 B LEU 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 B C GLY 77 B GLY 77 1_555 B N MSE 78 B MSE 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale12 B C MSE 78 B MSE 78 1_555 B N SER 79 B SER 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale13 B C ASN 117 B ASN 117 1_555 B N MSE 118 B MSE 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale14 B C MSE 118 B MSE 118 1_555 B N ARG 119 B ARG 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale15 B C VAL 121 B VAL 121 1_555 B N MSE 122 B MSE 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale16 B C MSE 122 B MSE 122 1_555 B N ARG 123 B ARG 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale17 B C SER 164 B SER 164 1_555 B N MSE 165 B MSE 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale18 B C MSE 165 B MSE 165 1_555 B N PHE 166 B PHE 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale19 C C MSE 3 C MSE 3 1_555 C N LEU 4 C LEU 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale20 C C GLY 77 C GLY 77 1_555 C N MSE 78 C MSE 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale21 C C MSE 78 C MSE 78 1_555 C N SER 79 C SER 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale22 C C ASN 117 C ASN 117 1_555 C N MSE 118 C MSE 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale23 C C MSE 118 C MSE 118 1_555 C N ARG 119 C ARG 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? covale ? covale24 C C VAL 121 C VAL 121 1_555 C N MSE 122 C MSE 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale25 C C MSE 122 C MSE 122 1_555 C N ARG 123 C ARG 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale26 C C SER 164 C SER 164 1_555 C N MSE 165 C MSE 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale27 C C MSE 165 C MSE 165 1_555 C N PHE 166 C PHE 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale28 D C MSE 3 D MSE 3 1_555 D N LEU 4 D LEU 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale29 D C GLY 77 D GLY 77 1_555 D N MSE 78 D MSE 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale30 D C MSE 78 D MSE 78 1_555 D N SER 79 D SER 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale31 D C ASN 117 D ASN 117 1_555 D N MSE 118 D MSE 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale32 D C MSE 118 D MSE 118 1_555 D N ARG 119 D ARG 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale33 D C VAL 121 D VAL 121 1_555 D N MSE 122 D MSE 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale34 D C MSE 122 D MSE 122 1_555 D N ARG 123 D ARG 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale35 D C SER 164 D SER 164 1_555 D N MSE 165 D MSE 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale36 D C MSE 165 D MSE 165 1_555 D N PHE 166 D PHE 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 70 n n N1 C10 FMN doub 71 n n C2 O2 FMN doub 72 n n C2 N3 FMN sing 73 n n N3 C4 FMN sing 74 n n N3 HN3 FMN sing 75 n n C4 O4 FMN doub 76 n n C4 C4A FMN sing 77 n n C4A N5 FMN doub 78 n n C4A C10 FMN sing 79 n n N5 C5A FMN sing 80 n n C5A C6 FMN doub 81 n y C5A C9A FMN sing 82 n y C6 C7 FMN sing 83 n y C6 H6 FMN sing 84 n n C7 C7M FMN sing 85 n n C7 C8 FMN doub 86 n y C7M HM71 FMN sing 87 n n C7M HM72 FMN sing 88 n n C7M HM73 FMN sing 89 n n C8 C8M FMN sing 90 n n C8 C9 FMN sing 91 n y C8M HM81 FMN sing 92 n n C8M HM82 FMN sing 93 n n C8M HM83 FMN sing 94 n n C9 C9A FMN doub 95 n y C9 H9 FMN sing 96 n n C9A N10 FMN sing 97 n n N10 C10 FMN sing 98 n n N10 C1' FMN sing 99 n n C1' C2' FMN sing 100 n n C1' "H1'1" FMN sing 101 n n C1' "H1'2" FMN sing 102 n n C2' O2' FMN sing 103 n n C2' C3' FMN sing 104 n n C2' H2' FMN sing 105 n n O2' HO2' FMN sing 106 n n C3' O3' FMN sing 107 n n C3' C4' FMN sing 108 n n C3' H3' FMN sing 109 n n O3' HO3' FMN sing 110 n n C4' O4' FMN sing 111 n n C4' C5' FMN sing 112 n n C4' H4' FMN sing 113 n n O4' HO4' FMN sing 114 n n C5' O5' FMN sing 115 n n C5' "H5'1" FMN sing 116 n n C5' "H5'2" FMN sing 117 n n O5' P FMN sing 118 n n P O1P FMN doub 119 n n P O2P FMN sing 120 n n P O3P FMN sing 121 n n O2P HOP2 FMN sing 122 n n O3P HOP3 FMN sing 123 n n # _atom_sites.entry_id 2GSW _atom_sites.fract_transf_matrix[1][1] 0.019068 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004522 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010071 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014801 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FMN A 1 201 201 FMN FMN . F 2 FMN B 1 202 201 FMN FMN . G 2 FMN C 1 203 201 FMN FMN . H 2 FMN D 1 204 201 FMN FMN . I 3 HOH A 1 202 1 HOH HOH . I 3 HOH A 2 203 2 HOH HOH . I 3 HOH A 3 204 3 HOH HOH . I 3 HOH A 4 205 4 HOH HOH . I 3 HOH A 5 206 5 HOH HOH . I 3 HOH A 6 207 6 HOH HOH . I 3 HOH A 7 208 7 HOH HOH . I 3 HOH A 8 209 8 HOH HOH . I 3 HOH A 9 210 9 HOH HOH . J 3 HOH B 1 203 14 HOH HOH . J 3 HOH B 2 204 15 HOH HOH . J 3 HOH B 3 205 16 HOH HOH . J 3 HOH B 4 206 17 HOH HOH . J 3 HOH B 5 207 27 HOH HOH . K 3 HOH C 1 204 12 HOH HOH . K 3 HOH C 2 205 13 HOH HOH . K 3 HOH C 3 206 18 HOH HOH . K 3 HOH C 4 207 19 HOH HOH . K 3 HOH C 5 208 20 HOH HOH . K 3 HOH C 6 209 21 HOH HOH . K 3 HOH C 7 210 22 HOH HOH . K 3 HOH C 8 211 23 HOH HOH . K 3 HOH C 9 212 24 HOH HOH . K 3 HOH C 10 213 25 HOH HOH . K 3 HOH C 11 214 26 HOH HOH . K 3 HOH C 12 215 34 HOH HOH . K 3 HOH C 13 216 35 HOH HOH . L 3 HOH D 1 205 10 HOH HOH . L 3 HOH D 2 206 11 HOH HOH . L 3 HOH D 3 207 28 HOH HOH . L 3 HOH D 4 208 29 HOH HOH . L 3 HOH D 5 209 30 HOH HOH . L 3 HOH D 6 210 31 HOH HOH . L 3 HOH D 7 211 32 HOH HOH . L 3 HOH D 8 212 33 HOH HOH . L 3 HOH D 9 213 36 HOH HOH . L 3 HOH D 10 214 37 HOH HOH . L 3 HOH D 11 215 38 HOH HOH . L 3 HOH D 12 216 39 HOH HOH . L 3 HOH D 13 217 40 HOH HOH . L 3 HOH D 14 218 41 HOH HOH . L 3 HOH D 15 219 42 HOH HOH . L 3 HOH D 16 220 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . E 2 -7.931 4.376 32.04 1 87.7 ? N1 FMN 201 A 1 HETATM 2 C C2 FMN . . . E 2 -7.646 4.524 30.716 1 88.63 ? C2 FMN 201 A 1 HETATM 3 O O2 FMN . . . E 2 -8.299 4.159 29.734 1 89.91 ? O2 FMN 201 A 1 HETATM 4 N N3 FMN . . . E 2 -6.375 5.213 30.356 1 88.8 ? N3 FMN 201 A 1 HETATM 5 C C4 FMN . . . E 2 -5.443 5.726 31.34 1 88.23 ? C4 FMN 201 A 1 HETATM 6 O O4 FMN . . . E 2 -4.434 6.269 30.846 1 89.47 ? O4 FMN 201 A 1 HETATM 7 C C4A FMN . . . E 2 -5.788 5.547 32.685 1 87.29 ? C4A FMN 201 A 1 HETATM 8 N N5 FMN . . . E 2 -4.965 5.988 33.616 1 85.69 ? N5 FMN 201 A 1 HETATM 9 C C5A FMN . . . E 2 -5.255 5.825 35.015 1 85.46 ? C5A FMN 201 A 1 HETATM 10 C C6 FMN . . . E 2 -4.368 6.281 36.057 1 84.95 ? C6 FMN 201 A 1 HETATM 11 C C7 FMN . . . E 2 -4.697 6.067 37.485 1 84.18 ? C7 FMN 201 A 1 HETATM 12 C C7M FMN . . . E 2 -3.572 6.656 38.34 1 83.28 ? C7M FMN 201 A 1 HETATM 13 C C8 FMN . . . E 2 -5.947 5.365 37.866 1 84.78 ? C8 FMN 201 A 1 HETATM 14 C C8M FMN . . . E 2 -6.264 5.148 39.288 1 84.64 ? C8M FMN 201 A 1 HETATM 15 C C9 FMN . . . E 2 -6.831 4.919 36.873 1 85.79 ? C9 FMN 201 A 1 HETATM 16 C C9A FMN . . . E 2 -6.551 5.099 35.382 1 85.84 ? C9A FMN 201 A 1 HETATM 17 N N10 FMN . . . E 2 -7.494 4.611 34.42 1 85.55 ? N10 FMN 201 A 1 HETATM 18 C C10 FMN . . . E 2 -7.132 4.809 33.064 1 86.99 ? C10 FMN 201 A 1 HETATM 19 C C1' FMN . . . E 2 -8.756 3.909 34.694 1 82.42 ? C1' FMN 201 A 1 HETATM 20 C C2' FMN . . . E 2 -8.62 2.416 34.879 1 81.37 ? C2' FMN 201 A 1 HETATM 21 O O2' FMN . . . E 2 -8.012 1.85 33.745 1 80.86 ? O2' FMN 201 A 1 HETATM 22 C C3' FMN . . . E 2 -9.989 1.89 35.1 1 80.74 ? C3' FMN 201 A 1 HETATM 23 O O3' FMN . . . E 2 -10.416 2.26 36.449 1 82.52 ? O3' FMN 201 A 1 HETATM 24 C C4' FMN . . . E 2 -10.217 0.358 35.06 1 79.86 ? C4' FMN 201 A 1 HETATM 25 O O4' FMN . . . E 2 -11.578 0.101 35.301 1 79.3 ? O4' FMN 201 A 1 HETATM 26 C C5' FMN . . . E 2 -9.332 -0.487 36.065 1 79.21 ? C5' FMN 201 A 1 HETATM 27 O O5' FMN . . . E 2 -9.789 -0.161 37.398 1 79.87 ? O5' FMN 201 A 1 HETATM 28 P P FMN . . . E 2 -9.097 -0.82 38.631 1 78.6 ? P FMN 201 A 1 HETATM 29 O O1P FMN . . . E 2 -9.886 -0.212 39.809 1 79.02 ? O1P FMN 201 A 1 HETATM 30 O O2P FMN . . . E 2 -9.258 -2.297 38.559 1 78.25 ? O2P FMN 201 A 1 HETATM 31 O O3P FMN . . . E 2 -7.649 -0.358 38.733 1 80.6 ? O3P FMN 201 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #