data_2GTB # _model_server_result.job_id 8qquZ0zDGPZgZFop0za7WA _model_server_result.datetime_utc '2024-11-22 12:01:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2gtb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 2GTB # _exptl.entry_id 2GTB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 641.712 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(5S,8S,14R)-ETHYL 11-(3-AMINO-3-OXOPROPYL)-8-BENZYL-14-HYDROXY-5-ISOBUTYL-3,6,9,12-TETRAOXO-1-PHENYL-2-OXA-4,7,10,11-TETRAAZAPENTADECAN-15-OATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2GTB _cell.length_a 70.087 _cell.length_b 70.087 _cell.length_c 103.862 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2GTB _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 51.931 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 146 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id CBM _struct_conn.ptnr2_label_comp_id AZP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id AZP _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.148 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C32 H43 N5 O9' _chem_comp.formula_weight 641.712 _chem_comp.id AZP _chem_comp.mon_nstd_flag . _chem_comp.name '(5S,8S,14R)-ETHYL 11-(3-AMINO-3-OXOPROPYL)-8-BENZYL-14-HYDROXY-5-ISOBUTYL-3,6,9,12-TETRAOXO-1-PHENYL-2-OXA-4,7,10,11-TETRAAZAPENTADECAN-15-OATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CAI AZP sing 77 n n N CA AZP sing 78 n n N HN AZP sing 79 n n CAI OAH AZP sing 80 n n CAI OAL AZP doub 81 n n OAH CAG AZP sing 82 n n CAG CAE AZP sing 83 n n CAG HAG1 AZP sing 84 n n CAG HAG2 AZP sing 85 n n CAE CAD AZP doub 86 n y CAE CAF AZP sing 87 n y CAD CAC AZP sing 88 n y CAD HAD AZP sing 89 n n CAC CAB AZP doub 90 n y CAC HAC AZP sing 91 n n CAB CAA AZP sing 92 n y CAB HAB AZP sing 93 n n CAA CAF AZP doub 94 n y CAA HAA AZP sing 95 n n CAF HAF AZP sing 96 n n CA CB AZP sing 97 n n CA C AZP sing 98 n n CA HA AZP sing 99 n n CB CG AZP sing 100 n n CB HB1 AZP sing 101 n n CB HB2 AZP sing 102 n n CG CD1 AZP sing 103 n n CG CD2 AZP sing 104 n n CG HG AZP sing 105 n n CD1 HD11 AZP sing 106 n n CD1 HD12 AZP sing 107 n n CD1 HD13 AZP sing 108 n n CD2 HD21 AZP sing 109 n n CD2 HD22 AZP sing 110 n n CD2 HD23 AZP sing 111 n n C O AZP doub 112 n n C NAS AZP sing 113 n n NAS CAT AZP sing 114 n n NAS HAS AZP sing 115 n n CAT CAV AZP sing 116 n n CAT CAU AZP sing 117 n n CAT HAT AZP sing 118 n n CAV CAW AZP sing 119 n n CAV HAV1 AZP sing 120 n n CAV HAV2 AZP sing 121 n n CAW CBF AZP doub 122 n y CAW CBJ AZP sing 123 n y CBF CBG AZP sing 124 n y CBF HBF AZP sing 125 n n CBG CBH AZP doub 126 n y CBG HBG AZP sing 127 n n CBH CBI AZP sing 128 n y CBH HBH AZP sing 129 n n CBI CBJ AZP doub 130 n y CBI HBI AZP sing 131 n n CBJ HBJ AZP sing 132 n n CAU OAY AZP doub 133 n n CAU NAX AZP sing 134 n n NAX NAZ AZP sing 135 n n NAX HAX AZP sing 136 n n NAZ CBA AZP sing 137 n n NAZ CBK AZP sing 138 n n CBA CBB AZP sing 139 n n CBA HBA1 AZP sing 140 n n CBA HBA2 AZP sing 141 n n CBB CBC AZP sing 142 n n CBB HBB1 AZP sing 143 n n CBB HBB2 AZP sing 144 n n CBC NBE AZP sing 145 n n CBC OBD AZP doub 146 n n NBE HBE1 AZP sing 147 n n NBE HBE2 AZP sing 148 n n CBK OBL AZP doub 149 n n CBK CBM AZP sing 150 n n CBM CBO AZP sing 151 n n CBM HBM1 AZP sing 152 n n CBM HBM2 AZP sing 153 n n CBO OBN AZP sing 154 n n CBO CBP AZP sing 155 n n CBO HBO AZP sing 156 n n OBN HBN AZP sing 157 n n CBP OBQ AZP doub 158 n n CBP OBR AZP sing 159 n n OBR CBS AZP sing 160 n n CBS CBT AZP sing 161 n n CBS HBS1 AZP sing 162 n n CBS HBS2 AZP sing 163 n n CBT HBT1 AZP sing 164 n n CBT HBT2 AZP sing 165 n n CBT HBT3 AZP sing 166 n n # _atom_sites.entry_id 2GTB _atom_sites.fract_transf_matrix[1][1] 0.014268 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014268 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009628 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AZP A 1 401 1 AZP AZP . C 3 ACY A 1 402 1 ACY ACY . D 4 HOH A 1 403 2 HOH HOH . D 4 HOH A 2 404 3 HOH HOH . D 4 HOH A 3 405 4 HOH HOH . D 4 HOH A 4 406 5 HOH HOH . D 4 HOH A 5 407 6 HOH HOH . D 4 HOH A 6 408 7 HOH HOH . D 4 HOH A 7 409 8 HOH HOH . D 4 HOH A 8 410 9 HOH HOH . D 4 HOH A 9 411 10 HOH HOH . D 4 HOH A 10 412 11 HOH HOH . D 4 HOH A 11 413 12 HOH HOH . D 4 HOH A 12 414 13 HOH HOH . D 4 HOH A 13 415 14 HOH HOH . D 4 HOH A 14 416 15 HOH HOH . D 4 HOH A 15 417 16 HOH HOH . D 4 HOH A 16 418 17 HOH HOH . D 4 HOH A 17 419 18 HOH HOH . D 4 HOH A 18 420 19 HOH HOH . D 4 HOH A 19 421 20 HOH HOH . D 4 HOH A 20 422 21 HOH HOH . D 4 HOH A 21 423 22 HOH HOH . D 4 HOH A 22 424 23 HOH HOH . D 4 HOH A 23 425 24 HOH HOH . D 4 HOH A 24 426 25 HOH HOH . D 4 HOH A 25 427 26 HOH HOH . D 4 HOH A 26 428 27 HOH HOH . D 4 HOH A 27 429 28 HOH HOH . D 4 HOH A 28 430 29 HOH HOH . D 4 HOH A 29 431 30 HOH HOH . D 4 HOH A 30 432 31 HOH HOH . D 4 HOH A 31 433 32 HOH HOH . D 4 HOH A 32 434 33 HOH HOH . D 4 HOH A 33 435 34 HOH HOH . D 4 HOH A 34 436 35 HOH HOH . D 4 HOH A 35 437 36 HOH HOH . D 4 HOH A 36 438 37 HOH HOH . D 4 HOH A 37 439 38 HOH HOH . D 4 HOH A 38 440 39 HOH HOH . D 4 HOH A 39 441 40 HOH HOH . D 4 HOH A 40 442 41 HOH HOH . D 4 HOH A 41 443 42 HOH HOH . D 4 HOH A 42 444 43 HOH HOH . D 4 HOH A 43 445 44 HOH HOH . D 4 HOH A 44 446 45 HOH HOH . D 4 HOH A 45 447 46 HOH HOH . D 4 HOH A 46 448 47 HOH HOH . D 4 HOH A 47 449 50 HOH HOH . D 4 HOH A 48 450 51 HOH HOH . D 4 HOH A 49 451 52 HOH HOH . D 4 HOH A 50 452 53 HOH HOH . D 4 HOH A 51 453 57 HOH HOH . D 4 HOH A 52 454 58 HOH HOH . D 4 HOH A 53 455 59 HOH HOH . D 4 HOH A 54 456 60 HOH HOH . D 4 HOH A 55 457 61 HOH HOH . D 4 HOH A 56 458 62 HOH HOH . D 4 HOH A 57 459 63 HOH HOH . D 4 HOH A 58 460 64 HOH HOH . D 4 HOH A 59 461 65 HOH HOH . D 4 HOH A 60 462 66 HOH HOH . D 4 HOH A 61 463 67 HOH HOH . D 4 HOH A 62 464 68 HOH HOH . D 4 HOH A 63 465 69 HOH HOH . D 4 HOH A 64 466 70 HOH HOH . D 4 HOH A 65 467 71 HOH HOH . D 4 HOH A 66 468 72 HOH HOH . D 4 HOH A 67 469 73 HOH HOH . D 4 HOH A 68 470 74 HOH HOH . D 4 HOH A 69 471 75 HOH HOH . D 4 HOH A 70 472 76 HOH HOH . D 4 HOH A 71 473 77 HOH HOH . D 4 HOH A 72 474 78 HOH HOH . D 4 HOH A 73 475 79 HOH HOH . D 4 HOH A 74 476 80 HOH HOH . D 4 HOH A 75 477 81 HOH HOH . D 4 HOH A 76 478 82 HOH HOH . D 4 HOH A 77 479 83 HOH HOH . D 4 HOH A 78 480 84 HOH HOH . D 4 HOH A 79 481 85 HOH HOH . D 4 HOH A 80 482 86 HOH HOH . D 4 HOH A 81 483 87 HOH HOH . D 4 HOH A 82 484 88 HOH HOH . D 4 HOH A 83 485 89 HOH HOH . D 4 HOH A 84 486 90 HOH HOH . D 4 HOH A 85 487 91 HOH HOH . D 4 HOH A 86 488 92 HOH HOH . D 4 HOH A 87 489 93 HOH HOH . D 4 HOH A 88 490 94 HOH HOH . D 4 HOH A 89 491 95 HOH HOH . D 4 HOH A 90 492 96 HOH HOH . D 4 HOH A 91 493 97 HOH HOH . D 4 HOH A 92 494 98 HOH HOH . D 4 HOH A 93 495 99 HOH HOH . D 4 HOH A 94 496 100 HOH HOH . D 4 HOH A 95 497 101 HOH HOH . D 4 HOH A 96 498 102 HOH HOH . D 4 HOH A 97 499 103 HOH HOH . D 4 HOH A 98 500 104 HOH HOH . D 4 HOH A 99 501 105 HOH HOH . D 4 HOH A 100 502 106 HOH HOH . D 4 HOH A 101 503 107 HOH HOH . D 4 HOH A 102 504 108 HOH HOH . D 4 HOH A 103 505 109 HOH HOH . D 4 HOH A 104 506 110 HOH HOH . D 4 HOH A 105 507 111 HOH HOH . D 4 HOH A 106 508 112 HOH HOH . D 4 HOH A 107 509 113 HOH HOH . D 4 HOH A 108 510 114 HOH HOH . D 4 HOH A 109 511 115 HOH HOH . D 4 HOH A 110 512 116 HOH HOH . D 4 HOH A 111 513 117 HOH HOH . D 4 HOH A 112 514 118 HOH HOH . D 4 HOH A 113 515 120 HOH HOH . D 4 HOH A 114 516 122 HOH HOH . D 4 HOH A 115 517 123 HOH HOH . D 4 HOH A 116 518 124 HOH HOH . D 4 HOH A 117 519 125 HOH HOH . D 4 HOH A 118 520 126 HOH HOH . D 4 HOH A 119 521 128 HOH HOH . D 4 HOH A 120 522 129 HOH HOH . D 4 HOH A 121 523 131 HOH HOH . D 4 HOH A 122 524 132 HOH HOH . D 4 HOH A 123 525 134 HOH HOH . D 4 HOH A 124 526 135 HOH HOH . D 4 HOH A 125 527 136 HOH HOH . D 4 HOH A 126 528 142 HOH HOH . D 4 HOH A 127 529 143 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N AZP . . . B 2 16.683 -14.514 12.285 1 21.55 ? N AZP 401 A 1 HETATM 2 C CAI AZP . . . B 2 16.604 -15.346 13.315 1 22.22 ? CAI AZP 401 A 1 HETATM 3 O OAH AZP . . . B 2 15.31 -15.493 13.929 1 20.66 ? OAH AZP 401 A 1 HETATM 4 C CAG AZP . . . B 2 15.384 -15.653 15.354 1 23.65 ? CAG AZP 401 A 1 HETATM 5 C CAE AZP . . . B 2 13.963 -16.042 15.763 1 23.86 ? CAE AZP 401 A 1 HETATM 6 C CAD AZP . . . B 2 13.015 -15.056 16.083 1 24.55 ? CAD AZP 401 A 1 HETATM 7 C CAC AZP . . . B 2 11.714 -15.464 16.473 1 23.52 ? CAC AZP 401 A 1 HETATM 8 C CAB AZP . . . B 2 11.337 -16.815 16.499 1 22.15 ? CAB AZP 401 A 1 HETATM 9 C CAA AZP . . . B 2 12.263 -17.797 16.168 1 21.26 ? CAA AZP 401 A 1 HETATM 10 C CAF AZP . . . B 2 13.572 -17.401 15.805 1 24.84 ? CAF AZP 401 A 1 HETATM 11 O OAL AZP . . . B 2 17.557 -15.99 13.718 1 24.38 ? OAL AZP 401 A 1 HETATM 12 C CA AZP . . . B 2 17.756 -14.457 11.264 1 22.56 ? CA AZP 401 A 1 HETATM 13 C CB AZP . . . B 2 17.266 -14.964 9.893 1 22.6 ? CB AZP 401 A 1 HETATM 14 C CG AZP . . . B 2 17.533 -16.442 9.67 1 24.29 ? CG AZP 401 A 1 HETATM 15 C CD1 AZP . . . B 2 16.637 -17.248 10.571 1 25.58 ? CD1 AZP 401 A 1 HETATM 16 C CD2 AZP . . . B 2 17.118 -16.868 8.258 1 21.43 ? CD2 AZP 401 A 1 HETATM 17 C C AZP . . . B 2 18.081 -13.006 11.145 1 22.08 ? C AZP 401 A 1 HETATM 18 O O AZP . . . B 2 17.199 -12.176 10.95 1 22.84 ? O AZP 401 A 1 HETATM 19 N NAS AZP . . . B 2 19.329 -12.613 11.241 1 21.28 ? NAS AZP 401 A 1 HETATM 20 C CAT AZP . . . B 2 19.708 -11.22 11.111 1 23.43 ? CAT AZP 401 A 1 HETATM 21 C CAV AZP . . . B 2 21.217 -11.082 11.254 1 20.91 ? CAV AZP 401 A 1 HETATM 22 C CAW AZP . . . B 2 21.706 -11.308 12.667 1 17.35 ? CAW AZP 401 A 1 HETATM 23 C CBF AZP . . . B 2 21.15 -10.656 13.766 1 24.44 ? CBF AZP 401 A 1 HETATM 24 C CBG AZP . . . B 2 21.684 -10.867 15.049 1 21.72 ? CBG AZP 401 A 1 HETATM 25 C CBH AZP . . . B 2 22.75 -11.734 15.255 1 21.85 ? CBH AZP 401 A 1 HETATM 26 C CBI AZP . . . B 2 23.279 -12.396 14.166 1 22.03 ? CBI AZP 401 A 1 HETATM 27 C CBJ AZP . . . B 2 22.763 -12.163 12.889 1 20.38 ? CBJ AZP 401 A 1 HETATM 28 C CAU AZP . . . B 2 19.329 -10.738 9.758 1 25.79 ? CAU AZP 401 A 1 HETATM 29 O OAY AZP . . . B 2 19.406 -11.461 8.733 1 23.92 ? OAY AZP 401 A 1 HETATM 30 N NAX AZP . . . B 2 18.928 -9.463 9.723 1 27.74 ? NAX AZP 401 A 1 HETATM 31 N NAZ AZP . . . B 2 18.576 -8.915 8.451 1 25.87 ? NAZ AZP 401 A 1 HETATM 32 C CBA AZP . . . B 2 17.191 -8.997 8.055 1 25.63 ? CBA AZP 401 A 1 HETATM 33 C CBB AZP . . . B 2 17.011 -9.715 6.712 1 24.53 ? CBB AZP 401 A 1 HETATM 34 C CBC AZP . . . B 2 15.504 -9.808 6.459 1 25.41 ? CBC AZP 401 A 1 HETATM 35 N NBE AZP . . . B 2 15.004 -10.681 5.572 1 22.49 ? NBE AZP 401 A 1 HETATM 36 O OBD AZP . . . B 2 14.738 -9.087 7.074 1 21.49 ? OBD AZP 401 A 1 HETATM 37 C CBK AZP . . . B 2 19.577 -8.38 7.695 1 23.75 ? CBK AZP 401 A 1 HETATM 38 O OBL AZP . . . B 2 19.372 -7.948 6.589 1 15.38 ? OBL AZP 401 A 1 HETATM 39 C CBM AZP . . . B 2 20.99 -8.264 8.215 1 21.03 ? CBM AZP 401 A 1 HETATM 40 C CBO AZP . . . B 2 22.046 -9.135 7.522 1 22.29 ? CBO AZP 401 A 1 HETATM 41 O OBN AZP . . . B 2 21.636 -10.467 7.765 1 19.79 ? OBN AZP 401 A 1 HETATM 42 C CBP AZP . . . B 2 23.383 -8.907 8.169 1 19.9 ? CBP AZP 401 A 1 HETATM 43 O OBQ AZP . . . B 2 24.083 -8.006 7.796 1 21.16 ? OBQ AZP 401 A 1 HETATM 44 O OBR AZP . . . B 2 23.788 -9.797 9.238 1 21.69 ? OBR AZP 401 A 1 HETATM 45 C CBS AZP . . . B 2 24.954 -9.423 9.946 1 23.06 ? CBS AZP 401 A 1 HETATM 46 C CBT AZP . . . B 2 25.094 -10.544 10.945 1 25.42 ? CBT AZP 401 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 46 #