data_2GTF # _model_server_result.job_id 2B5OLWNtyyqNRv4zRXoMtg _model_server_result.datetime_utc '2024-11-23 00:13:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2gtf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 2GTF # _exptl.entry_id 2GTF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 80.088 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PYRIMIDINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2GTF _cell.length_a 34.374 _cell.length_b 34.374 _cell.length_c 255.82 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2GTF _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 X CYS 2 1_555 A SG CYS 122 X CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf2 A SG CYS 40 X CYS 39 1_555 A SG CYS 171 X CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc1 A NE2 HIS 58 X HIS 57 1_555 B FE HEM . X HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc2 B FE HEM . X HEM 201 1_555 C N1 P1R . X P1R 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? # _chem_comp.formula 'C4 H4 N2' _chem_comp.formula_weight 80.088 _chem_comp.id P1R _chem_comp.mon_nstd_flag . _chem_comp.name PYRIMIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 C6 P1R sing 319 n y C5 C4 P1R doub 320 n y C5 H5 P1R sing 321 n n C6 N1 P1R doub 322 n y C6 H6 P1R sing 323 n n N1 C2 P1R sing 324 n y C4 N3 P1R sing 325 n y C4 H4 P1R sing 326 n n N3 C2 P1R doub 327 n y C2 H2 P1R sing 328 n n # _atom_sites.entry_id 2GTF _atom_sites.fract_transf_matrix[1][1] 0.029092 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.029092 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003909 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM X 1 201 201 HEM HEM . C 3 P1R X 1 202 202 P1R P1R . D 4 HOH X 1 301 301 HOH HOH . D 4 HOH X 2 302 302 HOH HOH . D 4 HOH X 3 303 308 HOH HOH . D 4 HOH X 4 304 309 HOH HOH . D 4 HOH X 5 305 310 HOH HOH . D 4 HOH X 6 306 311 HOH HOH . D 4 HOH X 7 307 312 HOH HOH . D 4 HOH X 8 308 313 HOH HOH . D 4 HOH X 9 309 314 HOH HOH . D 4 HOH X 10 310 316 HOH HOH . D 4 HOH X 11 311 317 HOH HOH . D 4 HOH X 12 312 318 HOH HOH . D 4 HOH X 13 313 319 HOH HOH . D 4 HOH X 14 314 320 HOH HOH . D 4 HOH X 15 315 321 HOH HOH . D 4 HOH X 16 316 322 HOH HOH . D 4 HOH X 17 317 323 HOH HOH . D 4 HOH X 18 318 324 HOH HOH . D 4 HOH X 19 319 347 HOH HOH . D 4 HOH X 20 320 348 HOH HOH . D 4 HOH X 21 321 349 HOH HOH . D 4 HOH X 22 322 350 HOH HOH . D 4 HOH X 23 323 351 HOH HOH . D 4 HOH X 24 324 352 HOH HOH . D 4 HOH X 25 325 354 HOH HOH . D 4 HOH X 26 326 355 HOH HOH . D 4 HOH X 27 327 356 HOH HOH . D 4 HOH X 28 328 357 HOH HOH . D 4 HOH X 29 329 358 HOH HOH . D 4 HOH X 30 330 359 HOH HOH . D 4 HOH X 31 331 360 HOH HOH . D 4 HOH X 32 332 361 HOH HOH . D 4 HOH X 33 333 362 HOH HOH . D 4 HOH X 34 334 363 HOH HOH . D 4 HOH X 35 335 365 HOH HOH . D 4 HOH X 36 336 366 HOH HOH . D 4 HOH X 37 337 367 HOH HOH . D 4 HOH X 38 338 368 HOH HOH . D 4 HOH X 39 339 369 HOH HOH . D 4 HOH X 40 340 370 HOH HOH . D 4 HOH X 41 341 371 HOH HOH . D 4 HOH X 42 342 422 HOH HOH . D 4 HOH X 43 343 423 HOH HOH . D 4 HOH X 44 344 424 HOH HOH . D 4 HOH X 45 345 425 HOH HOH . D 4 HOH X 46 346 426 HOH HOH . D 4 HOH X 47 347 427 HOH HOH . D 4 HOH X 48 348 428 HOH HOH . D 4 HOH X 49 349 429 HOH HOH . D 4 HOH X 50 350 431 HOH HOH . D 4 HOH X 51 351 432 HOH HOH . D 4 HOH X 52 352 433 HOH HOH . D 4 HOH X 53 353 434 HOH HOH . D 4 HOH X 54 354 435 HOH HOH . D 4 HOH X 55 355 436 HOH HOH . D 4 HOH X 56 356 437 HOH HOH . D 4 HOH X 57 357 438 HOH HOH . D 4 HOH X 58 358 439 HOH HOH . D 4 HOH X 59 359 440 HOH HOH . D 4 HOH X 60 360 441 HOH HOH . D 4 HOH X 61 361 442 HOH HOH . D 4 HOH X 62 362 443 HOH HOH . D 4 HOH X 63 363 444 HOH HOH . D 4 HOH X 64 364 445 HOH HOH . D 4 HOH X 65 365 446 HOH HOH . D 4 HOH X 66 366 447 HOH HOH . D 4 HOH X 67 367 448 HOH HOH . D 4 HOH X 68 368 449 HOH HOH . D 4 HOH X 69 369 450 HOH HOH . D 4 HOH X 70 370 451 HOH HOH . D 4 HOH X 71 371 452 HOH HOH . D 4 HOH X 72 372 453 HOH HOH . D 4 HOH X 73 373 454 HOH HOH . D 4 HOH X 74 374 455 HOH HOH . D 4 HOH X 75 375 456 HOH HOH . D 4 HOH X 76 376 459 HOH HOH . D 4 HOH X 77 377 460 HOH HOH . D 4 HOH X 78 378 462 HOH HOH . D 4 HOH X 79 379 463 HOH HOH . D 4 HOH X 80 380 464 HOH HOH . D 4 HOH X 81 381 465 HOH HOH . D 4 HOH X 82 382 467 HOH HOH . D 4 HOH X 83 383 468 HOH HOH . D 4 HOH X 84 384 470 HOH HOH . D 4 HOH X 85 385 471 HOH HOH . D 4 HOH X 86 386 472 HOH HOH . D 4 HOH X 87 387 475 HOH HOH . D 4 HOH X 88 388 476 HOH HOH . D 4 HOH X 89 389 477 HOH HOH . D 4 HOH X 90 390 478 HOH HOH . D 4 HOH X 91 391 480 HOH HOH . D 4 HOH X 92 392 481 HOH HOH . D 4 HOH X 93 393 482 HOH HOH . D 4 HOH X 94 394 483 HOH HOH . D 4 HOH X 95 395 484 HOH HOH . D 4 HOH X 96 396 485 HOH HOH . D 4 HOH X 97 397 486 HOH HOH . D 4 HOH X 98 398 487 HOH HOH . D 4 HOH X 99 399 488 HOH HOH . D 4 HOH X 100 400 489 HOH HOH . D 4 HOH X 101 401 490 HOH HOH . D 4 HOH X 102 402 491 HOH HOH . D 4 HOH X 103 403 492 HOH HOH . D 4 HOH X 104 404 493 HOH HOH . D 4 HOH X 105 405 494 HOH HOH . D 4 HOH X 106 406 495 HOH HOH . D 4 HOH X 107 407 496 HOH HOH . D 4 HOH X 108 408 499 HOH HOH . D 4 HOH X 109 409 501 HOH HOH . D 4 HOH X 110 410 502 HOH HOH . D 4 HOH X 111 411 503 HOH HOH . D 4 HOH X 112 412 504 HOH HOH . D 4 HOH X 113 413 505 HOH HOH . D 4 HOH X 114 414 506 HOH HOH . D 4 HOH X 115 415 507 HOH HOH . D 4 HOH X 116 416 508 HOH HOH . D 4 HOH X 117 417 509 HOH HOH . D 4 HOH X 118 418 510 HOH HOH . D 4 HOH X 119 419 511 HOH HOH . D 4 HOH X 120 420 512 HOH HOH . D 4 HOH X 121 421 514 HOH HOH . D 4 HOH X 122 422 515 HOH HOH . D 4 HOH X 123 423 517 HOH HOH . D 4 HOH X 124 424 518 HOH HOH . D 4 HOH X 125 425 520 HOH HOH . D 4 HOH X 126 426 521 HOH HOH . D 4 HOH X 127 427 523 HOH HOH . D 4 HOH X 128 428 524 HOH HOH . D 4 HOH X 129 429 526 HOH HOH . D 4 HOH X 130 430 527 HOH HOH . D 4 HOH X 131 431 528 HOH HOH . D 4 HOH X 132 432 529 HOH HOH . D 4 HOH X 133 433 530 HOH HOH . D 4 HOH X 134 434 531 HOH HOH . D 4 HOH X 135 435 533 HOH HOH . D 4 HOH X 136 436 534 HOH HOH . D 4 HOH X 137 437 535 HOH HOH . D 4 HOH X 138 438 537 HOH HOH . D 4 HOH X 139 439 538 HOH HOH . D 4 HOH X 140 440 539 HOH HOH . D 4 HOH X 141 441 540 HOH HOH . D 4 HOH X 142 442 543 HOH HOH . D 4 HOH X 143 443 544 HOH HOH . D 4 HOH X 144 444 545 HOH HOH . D 4 HOH X 145 445 546 HOH HOH . D 4 HOH X 146 446 547 HOH HOH . D 4 HOH X 147 447 548 HOH HOH . D 4 HOH X 148 448 549 HOH HOH . D 4 HOH X 149 449 550 HOH HOH . D 4 HOH X 150 450 551 HOH HOH . D 4 HOH X 151 451 552 HOH HOH . D 4 HOH X 152 452 553 HOH HOH . D 4 HOH X 153 453 554 HOH HOH . D 4 HOH X 154 454 555 HOH HOH . D 4 HOH X 155 455 556 HOH HOH . D 4 HOH X 156 456 557 HOH HOH . D 4 HOH X 157 457 558 HOH HOH . D 4 HOH X 158 458 559 HOH HOH . D 4 HOH X 159 459 1 HOH HOH . D 4 HOH X 160 460 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 P1R . . . C 3 19.475 16.976 114.198 1 14.96 ? C5 P1R 202 X 1 HETATM 2 C C6 P1R . . . C 3 18.767 15.86 114.571 1 14.42 ? C6 P1R 202 X 1 HETATM 3 N N1 P1R . . . C 3 18.778 15.486 115.823 1 13.01 ? N1 P1R 202 X 1 HETATM 4 C C4 P1R . . . C 3 20.13 17.689 115.174 1 15.54 ? C4 P1R 202 X 1 HETATM 5 N N3 P1R . . . C 3 20.13 17.255 116.434 1 19.1 ? N3 P1R 202 X 1 HETATM 6 C C2 P1R . . . C 3 19.41 16.17 116.751 1 15.02 ? C2 P1R 202 X 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 6 #