data_2GTF
#
_model_server_result.job_id            VOHqvobxLL4hzsQLwx4tbA 
_model_server_result.datetime_utc      '2024-11-05 06:43:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2gtf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":202}' 
#
_entry.id    2GTF 
#
_exptl.entry_id    2GTF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              80.088 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            PYRIMIDINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2GTF 
_cell.length_a            34.374 
_cell.length_b            34.374 
_cell.length_c            255.82 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2GTF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 3 X CYS 2 1_555 A SG CYS 122 X CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? 
disulf ? disulf2 A SG CYS 40 X CYS 39 1_555 A SG CYS 171 X CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc1 A NE2 HIS 58 X HIS 57 1_555 B FE HEM . X HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc2 B FE HEM . X HEM 201 1_555 C N1 P1R . X P1R 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
#
_chem_comp.formula           'C4 H4 N2' 
_chem_comp.formula_weight    80.088 
_chem_comp.id                P1R 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              PYRIMIDINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C5 C6 P1R sing 319 n y 
C5 C4 P1R doub 320 n y 
C5 H5 P1R sing 321 n n 
C6 N1 P1R doub 322 n y 
C6 H6 P1R sing 323 n n 
N1 C2 P1R sing 324 n y 
C4 N3 P1R sing 325 n y 
C4 H4 P1R sing 326 n n 
N3 C2 P1R doub 327 n y 
C2 H2 P1R sing 328 n n 
#
_atom_sites.entry_id                     2GTF 
_atom_sites.fract_transf_matrix[1][1]    0.029092 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.029092 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003909 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM X 1 201 201 HEM HEM . 
C 3 P1R X 1 202 202 P1R P1R . 
D 4 HOH X 1 301 301 HOH HOH . 
D 4 HOH X 2 302 302 HOH HOH . 
D 4 HOH X 3 303 308 HOH HOH . 
D 4 HOH X 4 304 309 HOH HOH . 
D 4 HOH X 5 305 310 HOH HOH . 
D 4 HOH X 6 306 311 HOH HOH . 
D 4 HOH X 7 307 312 HOH HOH . 
D 4 HOH X 8 308 313 HOH HOH . 
D 4 HOH X 9 309 314 HOH HOH . 
D 4 HOH X 10 310 316 HOH HOH . 
D 4 HOH X 11 311 317 HOH HOH . 
D 4 HOH X 12 312 318 HOH HOH . 
D 4 HOH X 13 313 319 HOH HOH . 
D 4 HOH X 14 314 320 HOH HOH . 
D 4 HOH X 15 315 321 HOH HOH . 
D 4 HOH X 16 316 322 HOH HOH . 
D 4 HOH X 17 317 323 HOH HOH . 
D 4 HOH X 18 318 324 HOH HOH . 
D 4 HOH X 19 319 347 HOH HOH . 
D 4 HOH X 20 320 348 HOH HOH . 
D 4 HOH X 21 321 349 HOH HOH . 
D 4 HOH X 22 322 350 HOH HOH . 
D 4 HOH X 23 323 351 HOH HOH . 
D 4 HOH X 24 324 352 HOH HOH . 
D 4 HOH X 25 325 354 HOH HOH . 
D 4 HOH X 26 326 355 HOH HOH . 
D 4 HOH X 27 327 356 HOH HOH . 
D 4 HOH X 28 328 357 HOH HOH . 
D 4 HOH X 29 329 358 HOH HOH . 
D 4 HOH X 30 330 359 HOH HOH . 
D 4 HOH X 31 331 360 HOH HOH . 
D 4 HOH X 32 332 361 HOH HOH . 
D 4 HOH X 33 333 362 HOH HOH . 
D 4 HOH X 34 334 363 HOH HOH . 
D 4 HOH X 35 335 365 HOH HOH . 
D 4 HOH X 36 336 366 HOH HOH . 
D 4 HOH X 37 337 367 HOH HOH . 
D 4 HOH X 38 338 368 HOH HOH . 
D 4 HOH X 39 339 369 HOH HOH . 
D 4 HOH X 40 340 370 HOH HOH . 
D 4 HOH X 41 341 371 HOH HOH . 
D 4 HOH X 42 342 422 HOH HOH . 
D 4 HOH X 43 343 423 HOH HOH . 
D 4 HOH X 44 344 424 HOH HOH . 
D 4 HOH X 45 345 425 HOH HOH . 
D 4 HOH X 46 346 426 HOH HOH . 
D 4 HOH X 47 347 427 HOH HOH . 
D 4 HOH X 48 348 428 HOH HOH . 
D 4 HOH X 49 349 429 HOH HOH . 
D 4 HOH X 50 350 431 HOH HOH . 
D 4 HOH X 51 351 432 HOH HOH . 
D 4 HOH X 52 352 433 HOH HOH . 
D 4 HOH X 53 353 434 HOH HOH . 
D 4 HOH X 54 354 435 HOH HOH . 
D 4 HOH X 55 355 436 HOH HOH . 
D 4 HOH X 56 356 437 HOH HOH . 
D 4 HOH X 57 357 438 HOH HOH . 
D 4 HOH X 58 358 439 HOH HOH . 
D 4 HOH X 59 359 440 HOH HOH . 
D 4 HOH X 60 360 441 HOH HOH . 
D 4 HOH X 61 361 442 HOH HOH . 
D 4 HOH X 62 362 443 HOH HOH . 
D 4 HOH X 63 363 444 HOH HOH . 
D 4 HOH X 64 364 445 HOH HOH . 
D 4 HOH X 65 365 446 HOH HOH . 
D 4 HOH X 66 366 447 HOH HOH . 
D 4 HOH X 67 367 448 HOH HOH . 
D 4 HOH X 68 368 449 HOH HOH . 
D 4 HOH X 69 369 450 HOH HOH . 
D 4 HOH X 70 370 451 HOH HOH . 
D 4 HOH X 71 371 452 HOH HOH . 
D 4 HOH X 72 372 453 HOH HOH . 
D 4 HOH X 73 373 454 HOH HOH . 
D 4 HOH X 74 374 455 HOH HOH . 
D 4 HOH X 75 375 456 HOH HOH . 
D 4 HOH X 76 376 459 HOH HOH . 
D 4 HOH X 77 377 460 HOH HOH . 
D 4 HOH X 78 378 462 HOH HOH . 
D 4 HOH X 79 379 463 HOH HOH . 
D 4 HOH X 80 380 464 HOH HOH . 
D 4 HOH X 81 381 465 HOH HOH . 
D 4 HOH X 82 382 467 HOH HOH . 
D 4 HOH X 83 383 468 HOH HOH . 
D 4 HOH X 84 384 470 HOH HOH . 
D 4 HOH X 85 385 471 HOH HOH . 
D 4 HOH X 86 386 472 HOH HOH . 
D 4 HOH X 87 387 475 HOH HOH . 
D 4 HOH X 88 388 476 HOH HOH . 
D 4 HOH X 89 389 477 HOH HOH . 
D 4 HOH X 90 390 478 HOH HOH . 
D 4 HOH X 91 391 480 HOH HOH . 
D 4 HOH X 92 392 481 HOH HOH . 
D 4 HOH X 93 393 482 HOH HOH . 
D 4 HOH X 94 394 483 HOH HOH . 
D 4 HOH X 95 395 484 HOH HOH . 
D 4 HOH X 96 396 485 HOH HOH . 
D 4 HOH X 97 397 486 HOH HOH . 
D 4 HOH X 98 398 487 HOH HOH . 
D 4 HOH X 99 399 488 HOH HOH . 
D 4 HOH X 100 400 489 HOH HOH . 
D 4 HOH X 101 401 490 HOH HOH . 
D 4 HOH X 102 402 491 HOH HOH . 
D 4 HOH X 103 403 492 HOH HOH . 
D 4 HOH X 104 404 493 HOH HOH . 
D 4 HOH X 105 405 494 HOH HOH . 
D 4 HOH X 106 406 495 HOH HOH . 
D 4 HOH X 107 407 496 HOH HOH . 
D 4 HOH X 108 408 499 HOH HOH . 
D 4 HOH X 109 409 501 HOH HOH . 
D 4 HOH X 110 410 502 HOH HOH . 
D 4 HOH X 111 411 503 HOH HOH . 
D 4 HOH X 112 412 504 HOH HOH . 
D 4 HOH X 113 413 505 HOH HOH . 
D 4 HOH X 114 414 506 HOH HOH . 
D 4 HOH X 115 415 507 HOH HOH . 
D 4 HOH X 116 416 508 HOH HOH . 
D 4 HOH X 117 417 509 HOH HOH . 
D 4 HOH X 118 418 510 HOH HOH . 
D 4 HOH X 119 419 511 HOH HOH . 
D 4 HOH X 120 420 512 HOH HOH . 
D 4 HOH X 121 421 514 HOH HOH . 
D 4 HOH X 122 422 515 HOH HOH . 
D 4 HOH X 123 423 517 HOH HOH . 
D 4 HOH X 124 424 518 HOH HOH . 
D 4 HOH X 125 425 520 HOH HOH . 
D 4 HOH X 126 426 521 HOH HOH . 
D 4 HOH X 127 427 523 HOH HOH . 
D 4 HOH X 128 428 524 HOH HOH . 
D 4 HOH X 129 429 526 HOH HOH . 
D 4 HOH X 130 430 527 HOH HOH . 
D 4 HOH X 131 431 528 HOH HOH . 
D 4 HOH X 132 432 529 HOH HOH . 
D 4 HOH X 133 433 530 HOH HOH . 
D 4 HOH X 134 434 531 HOH HOH . 
D 4 HOH X 135 435 533 HOH HOH . 
D 4 HOH X 136 436 534 HOH HOH . 
D 4 HOH X 137 437 535 HOH HOH . 
D 4 HOH X 138 438 537 HOH HOH . 
D 4 HOH X 139 439 538 HOH HOH . 
D 4 HOH X 140 440 539 HOH HOH . 
D 4 HOH X 141 441 540 HOH HOH . 
D 4 HOH X 142 442 543 HOH HOH . 
D 4 HOH X 143 443 544 HOH HOH . 
D 4 HOH X 144 444 545 HOH HOH . 
D 4 HOH X 145 445 546 HOH HOH . 
D 4 HOH X 146 446 547 HOH HOH . 
D 4 HOH X 147 447 548 HOH HOH . 
D 4 HOH X 148 448 549 HOH HOH . 
D 4 HOH X 149 449 550 HOH HOH . 
D 4 HOH X 150 450 551 HOH HOH . 
D 4 HOH X 151 451 552 HOH HOH . 
D 4 HOH X 152 452 553 HOH HOH . 
D 4 HOH X 153 453 554 HOH HOH . 
D 4 HOH X 154 454 555 HOH HOH . 
D 4 HOH X 155 455 556 HOH HOH . 
D 4 HOH X 156 456 557 HOH HOH . 
D 4 HOH X 157 457 558 HOH HOH . 
D 4 HOH X 158 458 559 HOH HOH . 
D 4 HOH X 159 459 1 HOH HOH . 
D 4 HOH X 160 460 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C5 P1R . . . C 3 19.475 16.976 114.198 1 14.96 ? C5 P1R 202 X 1 
HETATM 2 C C6 P1R . . . C 3 18.767 15.86 114.571 1 14.42 ? C6 P1R 202 X 1 
HETATM 3 N N1 P1R . . . C 3 18.778 15.486 115.823 1 13.01 ? N1 P1R 202 X 1 
HETATM 4 C C4 P1R . . . C 3 20.13 17.689 115.174 1 15.54 ? C4 P1R 202 X 1 
HETATM 5 N N3 P1R . . . C 3 20.13 17.255 116.434 1 19.1 ? N3 P1R 202 X 1 
HETATM 6 C C2 P1R . . . C 3 19.41 16.17 116.751 1 15.02 ? C2 P1R 202 X 1 
#
_model_server_stats.io_time_ms              59 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#