data_2GU8 # _model_server_result.job_id EwhLKX_5RqXjfAxP4MsuEg _model_server_result.datetime_utc '2024-11-08 17:56:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2gu8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 2GU8 # _exptl.entry_id 2GU8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 436.358 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(1S)-2-AMINO-1-(2,4-DICHLOROBENZYL)ETHYL]-5-[2-(METHYLAMINO)PYRIMIDIN-4-YL]THIOPHENE-2-CARBOXAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2GU8 _cell.length_a 72.72 _cell.length_b 75.165 _cell.length_c 79.844 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2GU8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TRP 183 A TRP 196 1_555 A N TPO 184 A TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C TPO 184 A TPO 197 1_555 A N LEU 185 A LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale3 A C VAL 324 A VAL 337 1_555 A N SEP 325 A SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C SEP 325 A SEP 338 1_555 A N ILE 326 A ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C19 H19 Cl2 N5 O S' _chem_comp.formula_weight 436.358 _chem_comp.id 796 _chem_comp.mon_nstd_flag . _chem_comp.name N-[(1S)-2-AMINO-1-(2,4-DICHLOROBENZYL)ETHYL]-5-[2-(METHYLAMINO)PYRIMIDIN-4-YL]THIOPHENE-2-CARBOXAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'NOVARTIS 273796' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O23 C22 796 doub 1 n n C22 C18 796 sing 2 n n C22 N24 796 sing 3 n n C18 S1 796 sing 4 n y C18 C17 796 doub 5 n y S1 C15 796 sing 6 n y C17 C16 796 sing 7 n y C17 H17 796 sing 8 n n C16 C15 796 doub 9 n y C16 H16 796 sing 10 n n C15 C3 796 sing 11 n y C3 C2 796 doub 12 n y C3 N4 796 sing 13 n y C2 C1 796 sing 14 n y C2 H2 796 sing 15 n n N4 C5 796 doub 16 n y C5 N9 796 sing 17 n n C5 N6 796 sing 18 n y N9 C10 796 sing 19 n n N9 HN9 796 sing 20 n n C10 H101 796 sing 21 n n C10 H102 796 sing 22 n n C10 H103 796 sing 23 n n N6 C1 796 doub 24 n y C1 H1 796 sing 25 n n N24 C25 796 sing 26 n n N24 HN24 796 sing 27 n n C25 C27 796 sing 28 n n C25 C28 796 sing 29 n n C25 H25 796 sing 30 n n C27 N43 796 sing 31 n n C27 H271 796 sing 32 n n C27 H272 796 sing 33 n n N43 H431 796 sing 34 n n N43 H432 796 sing 35 n n C28 C30 796 sing 36 n n C28 H281 796 sing 37 n n C28 H282 796 sing 38 n n C30 C37 796 sing 39 n y C30 C33 796 doub 40 n y C37 C36 796 doub 41 n y C37 H37 796 sing 42 n n C36 C35 796 sing 43 n y C36 H36 796 sing 44 n n C35 CL4 796 sing 45 n n C35 C34 796 doub 46 n y C34 C33 796 sing 47 n y C34 H34 796 sing 48 n n C33 CL2 796 sing 49 n n # _atom_sites.entry_id 2GU8 _atom_sites.fract_transf_matrix[1][1] 0.013751 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013304 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012524 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 796 A 1 1001 1001 796 796 . D 4 HOH A 1 1002 1 HOH HOH . D 4 HOH A 2 1003 3 HOH HOH . D 4 HOH A 3 1004 6 HOH HOH . D 4 HOH A 4 1005 7 HOH HOH . D 4 HOH A 5 1006 8 HOH HOH . D 4 HOH A 6 1007 9 HOH HOH . D 4 HOH A 7 1008 12 HOH HOH . D 4 HOH A 8 1009 13 HOH HOH . D 4 HOH A 9 1010 14 HOH HOH . D 4 HOH A 10 1011 15 HOH HOH . D 4 HOH A 11 1012 16 HOH HOH . D 4 HOH A 12 1013 17 HOH HOH . D 4 HOH A 13 1014 20 HOH HOH . D 4 HOH A 14 1015 21 HOH HOH . D 4 HOH A 15 1016 23 HOH HOH . D 4 HOH A 16 1017 25 HOH HOH . D 4 HOH A 17 1018 26 HOH HOH . D 4 HOH A 18 1019 27 HOH HOH . D 4 HOH A 19 1020 28 HOH HOH . D 4 HOH A 20 1021 30 HOH HOH . D 4 HOH A 21 1022 32 HOH HOH . D 4 HOH A 22 1023 33 HOH HOH . D 4 HOH A 23 1024 34 HOH HOH . D 4 HOH A 24 1025 35 HOH HOH . D 4 HOH A 25 1026 36 HOH HOH . D 4 HOH A 26 1027 37 HOH HOH . D 4 HOH A 27 1028 38 HOH HOH . D 4 HOH A 28 1029 39 HOH HOH . D 4 HOH A 29 1030 40 HOH HOH . D 4 HOH A 30 1031 41 HOH HOH . D 4 HOH A 31 1032 42 HOH HOH . D 4 HOH A 32 1033 43 HOH HOH . D 4 HOH A 33 1034 44 HOH HOH . D 4 HOH A 34 1035 45 HOH HOH . D 4 HOH A 35 1036 47 HOH HOH . D 4 HOH A 36 1037 48 HOH HOH . D 4 HOH A 37 1038 49 HOH HOH . D 4 HOH A 38 1039 52 HOH HOH . D 4 HOH A 39 1040 53 HOH HOH . D 4 HOH A 40 1041 54 HOH HOH . D 4 HOH A 41 1042 55 HOH HOH . D 4 HOH A 42 1043 56 HOH HOH . D 4 HOH A 43 1044 57 HOH HOH . D 4 HOH A 44 1045 58 HOH HOH . D 4 HOH A 45 1046 59 HOH HOH . D 4 HOH A 46 1047 60 HOH HOH . D 4 HOH A 47 1048 61 HOH HOH . D 4 HOH A 48 1049 62 HOH HOH . D 4 HOH A 49 1050 64 HOH HOH . D 4 HOH A 50 1051 65 HOH HOH . D 4 HOH A 51 1052 66 HOH HOH . D 4 HOH A 52 1053 67 HOH HOH . D 4 HOH A 53 1054 68 HOH HOH . D 4 HOH A 54 1055 69 HOH HOH . D 4 HOH A 55 1056 70 HOH HOH . D 4 HOH A 56 1057 72 HOH HOH . D 4 HOH A 57 1058 73 HOH HOH . D 4 HOH A 58 1059 74 HOH HOH . D 4 HOH A 59 1060 75 HOH HOH . D 4 HOH A 60 1061 76 HOH HOH . D 4 HOH A 61 1062 79 HOH HOH . D 4 HOH A 62 1063 80 HOH HOH . D 4 HOH A 63 1064 81 HOH HOH . D 4 HOH A 64 1065 82 HOH HOH . D 4 HOH A 65 1066 83 HOH HOH . D 4 HOH A 66 1067 84 HOH HOH . D 4 HOH A 67 1068 85 HOH HOH . D 4 HOH A 68 1069 86 HOH HOH . D 4 HOH A 69 1070 88 HOH HOH . D 4 HOH A 70 1071 89 HOH HOH . D 4 HOH A 71 1072 90 HOH HOH . D 4 HOH A 72 1073 91 HOH HOH . D 4 HOH A 73 1074 92 HOH HOH . D 4 HOH A 74 1075 95 HOH HOH . D 4 HOH A 75 1076 96 HOH HOH . D 4 HOH A 76 1077 98 HOH HOH . D 4 HOH A 77 1078 99 HOH HOH . D 4 HOH A 78 1079 100 HOH HOH . D 4 HOH A 79 1080 101 HOH HOH . D 4 HOH A 80 1081 102 HOH HOH . D 4 HOH A 81 1082 103 HOH HOH . D 4 HOH A 82 1083 104 HOH HOH . D 4 HOH A 83 1084 105 HOH HOH . D 4 HOH A 84 1085 106 HOH HOH . D 4 HOH A 85 1086 107 HOH HOH . D 4 HOH A 86 1087 108 HOH HOH . D 4 HOH A 87 1088 109 HOH HOH . D 4 HOH A 88 1089 110 HOH HOH . D 4 HOH A 89 1090 111 HOH HOH . D 4 HOH A 90 1091 112 HOH HOH . D 4 HOH A 91 1092 113 HOH HOH . D 4 HOH A 92 1093 114 HOH HOH . D 4 HOH A 93 1094 119 HOH HOH . D 4 HOH A 94 1095 121 HOH HOH . D 4 HOH A 95 1096 122 HOH HOH . D 4 HOH A 96 1097 123 HOH HOH . D 4 HOH A 97 1098 125 HOH HOH . D 4 HOH A 98 1099 126 HOH HOH . D 4 HOH A 99 1100 127 HOH HOH . D 4 HOH A 100 1101 128 HOH HOH . D 4 HOH A 101 1102 129 HOH HOH . D 4 HOH A 102 1103 130 HOH HOH . D 4 HOH A 103 1104 131 HOH HOH . D 4 HOH A 104 1105 132 HOH HOH . D 4 HOH A 105 1106 133 HOH HOH . D 4 HOH A 106 1107 135 HOH HOH . D 4 HOH A 107 1108 136 HOH HOH . D 4 HOH A 108 1109 137 HOH HOH . D 4 HOH A 109 1110 139 HOH HOH . D 4 HOH A 110 1111 140 HOH HOH . D 4 HOH A 111 1112 141 HOH HOH . D 4 HOH A 112 1113 142 HOH HOH . D 4 HOH A 113 1114 144 HOH HOH . D 4 HOH A 114 1115 146 HOH HOH . D 4 HOH A 115 1116 152 HOH HOH . D 4 HOH A 116 1117 154 HOH HOH . D 4 HOH A 117 1118 155 HOH HOH . D 4 HOH A 118 1119 157 HOH HOH . D 4 HOH A 119 1120 161 HOH HOH . D 4 HOH A 120 1121 163 HOH HOH . D 4 HOH A 121 1122 166 HOH HOH . D 4 HOH A 122 1123 168 HOH HOH . D 4 HOH A 123 1124 171 HOH HOH . D 4 HOH A 124 1125 173 HOH HOH . D 4 HOH A 125 1126 174 HOH HOH . D 4 HOH A 126 1127 175 HOH HOH . D 4 HOH A 127 1128 176 HOH HOH . D 4 HOH A 128 1129 178 HOH HOH . D 4 HOH A 129 1130 179 HOH HOH . D 4 HOH A 130 1131 180 HOH HOH . D 4 HOH A 131 1132 182 HOH HOH . D 4 HOH A 132 1133 183 HOH HOH . D 4 HOH A 133 1134 184 HOH HOH . D 4 HOH A 134 1135 187 HOH HOH . D 4 HOH A 135 1136 189 HOH HOH . D 4 HOH A 136 1137 191 HOH HOH . D 4 HOH A 137 1138 193 HOH HOH . D 4 HOH A 138 1139 197 HOH HOH . D 4 HOH A 139 1140 199 HOH HOH . D 4 HOH A 140 1141 202 HOH HOH . D 4 HOH A 141 1142 203 HOH HOH . D 4 HOH A 142 1143 204 HOH HOH . D 4 HOH A 143 1144 205 HOH HOH . D 4 HOH A 144 1145 209 HOH HOH . D 4 HOH A 145 1146 211 HOH HOH . D 4 HOH A 146 1147 212 HOH HOH . D 4 HOH A 147 1148 213 HOH HOH . D 4 HOH A 148 1149 214 HOH HOH . D 4 HOH A 149 1150 216 HOH HOH . D 4 HOH A 150 1151 219 HOH HOH . D 4 HOH A 151 1152 220 HOH HOH . D 4 HOH A 152 1153 221 HOH HOH . E 4 HOH C 1 5 5 HOH HOH . E 4 HOH C 2 10 10 HOH HOH . E 4 HOH C 3 18 18 HOH HOH . E 4 HOH C 4 19 19 HOH HOH . E 4 HOH C 5 24 24 HOH HOH . E 4 HOH C 6 29 29 HOH HOH . E 4 HOH C 7 31 31 HOH HOH . E 4 HOH C 8 46 46 HOH HOH . E 4 HOH C 9 50 50 HOH HOH . E 4 HOH C 10 77 77 HOH HOH . E 4 HOH C 11 87 87 HOH HOH . E 4 HOH C 12 93 93 HOH HOH . E 4 HOH C 13 115 115 HOH HOH . E 4 HOH C 14 145 145 HOH HOH . E 4 HOH C 15 150 150 HOH HOH . E 4 HOH C 16 153 153 HOH HOH . E 4 HOH C 17 195 195 HOH HOH . E 4 HOH C 18 198 198 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O23 796 . . . C 3 -9.69 -9.261 0.684 1 36.42 ? O23 796 1001 A 1 HETATM 2 C C22 796 . . . C 3 -10.094 -9.522 1.832 1 39.7 ? C22 796 1001 A 1 HETATM 3 C C18 796 . . . C 3 -9.142 -9.794 2.927 1 37.56 ? C18 796 1001 A 1 HETATM 4 S S1 796 . . . C 3 -7.476 -9.917 2.366 1 35.79 ? S1 796 1001 A 1 HETATM 5 C C17 796 . . . C 3 -9.243 -10.001 4.289 1 37.89 ? C17 796 1001 A 1 HETATM 6 C C16 796 . . . C 3 -8.015 -10.254 4.915 1 38.27 ? C16 796 1001 A 1 HETATM 7 C C15 796 . . . C 3 -6.935 -10.268 4.033 1 38.12 ? C15 796 1001 A 1 HETATM 8 C C3 796 . . . C 3 -5.456 -10.373 4.213 1 37.27 ? C3 796 1001 A 1 HETATM 9 C C2 796 . . . C 3 -4.885 -10.444 5.491 1 36.03 ? C2 796 1001 A 1 HETATM 10 N N4 796 . . . C 3 -4.667 -10.294 3.115 1 37.54 ? N4 796 1001 A 1 HETATM 11 C C5 796 . . . C 3 -3.313 -10.306 3.299 1 34.83 ? C5 796 1001 A 1 HETATM 12 N N9 796 . . . C 3 -2.567 -10.239 2.232 1 34.9 ? N9 796 1001 A 1 HETATM 13 C C10 796 . . . C 3 -3.234 -9.922 0.988 1 32.39 ? C10 796 1001 A 1 HETATM 14 N N6 796 . . . C 3 -2.759 -10.404 4.518 1 35.38 ? N6 796 1001 A 1 HETATM 15 C C1 796 . . . C 3 -3.487 -10.471 5.637 1 34.75 ? C1 796 1001 A 1 HETATM 16 N N24 796 . . . C 3 -11.364 -9.586 2.201 1 44.26 ? N24 796 1001 A 1 HETATM 17 C C25 796 . . . C 3 -12.392 -8.987 1.375 1 44.51 ? C25 796 1001 A 1 HETATM 18 C C27 796 . . . C 3 -12.597 -7.523 1.75 1 41.41 ? C27 796 1001 A 1 HETATM 19 N N43 796 . . . C 3 -13.369 -6.797 0.753 1 41.67 ? N43 796 1001 A 1 HETATM 20 C C28 796 . . . C 3 -13.592 -9.862 1.699 1 48 ? C28 796 1001 A 1 HETATM 21 C C30 796 . . . C 3 -13.475 -11.196 0.951 1 50.84 ? C30 796 1001 A 1 HETATM 22 C C37 796 . . . C 3 -13.875 -11.306 -0.371 1 52.35 ? C37 796 1001 A 1 HETATM 23 C C36 796 . . . C 3 -13.79 -12.54 -1.033 1 53.37 ? C36 796 1001 A 1 HETATM 24 C C35 796 . . . C 3 -13.307 -13.645 -0.365 1 51.04 ? C35 796 1001 A 1 HETATM 25 CL CL4 796 . . . C 3 -13.168 -15.231 -1.141 1 57.09 ? CL4 796 1001 A 1 HETATM 26 C C34 796 . . . C 3 -12.885 -13.567 0.922 1 52.62 ? C34 796 1001 A 1 HETATM 27 C C33 796 . . . C 3 -12.966 -12.343 1.553 1 53.96 ? C33 796 1001 A 1 HETATM 28 CL CL2 796 . . . C 3 -12.406 -12.346 3.24 1 62.49 ? CL2 796 1001 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #