data_2GUE # _model_server_result.job_id OlebZPO9FnWcArz3FG3hUg _model_server_result.datetime_utc '2024-11-26 17:55:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2gue # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":122}' # _entry.id 2GUE # _exptl.entry_id 2GUE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2GUE _cell.length_a 33.83 _cell.length_b 65.45 _cell.length_c 96.18 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2GUE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id R _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 0 1_555 A N SER 2 A SER 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale2 B C ACE 1 B ACE 0 1_555 B N SER 2 B SER 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 239 n n C1 O1 NAG sing 240 n n C1 O5 NAG sing 241 n n C1 H1 NAG sing 242 n n C2 C3 NAG sing 243 n n C2 N2 NAG sing 244 n n C2 H2 NAG sing 245 n n C3 C4 NAG sing 246 n n C3 O3 NAG sing 247 n n C3 H3 NAG sing 248 n n C4 C5 NAG sing 249 n n C4 O4 NAG sing 250 n n C4 H4 NAG sing 251 n n C5 C6 NAG sing 252 n n C5 O5 NAG sing 253 n n C5 H5 NAG sing 254 n n C6 O6 NAG sing 255 n n C6 H61 NAG sing 256 n n C6 H62 NAG sing 257 n n C7 C8 NAG sing 258 n n C7 N2 NAG sing 259 n n C7 O7 NAG doub 260 n n C8 H81 NAG sing 261 n n C8 H82 NAG sing 262 n n C8 H83 NAG sing 263 n n N2 HN2 NAG sing 264 n n O1 HO1 NAG sing 265 n n O3 HO3 NAG sing 266 n n O4 HO4 NAG sing 267 n n O6 HO6 NAG sing 268 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 2GUE _atom_sites.fract_transf_matrix[1][1] 0.029563 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015279 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010397 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 202 2 SO4 SO4 . D 2 SO4 A 1 204 4 SO4 SO4 . E 3 EDO A 1 302 2 EDO EDO . F 3 EDO A 1 303 3 EDO EDO . G 3 EDO A 1 304 4 EDO EDO . H 3 EDO A 1 305 5 EDO EDO . I 3 EDO A 1 307 7 EDO EDO . J 3 EDO A 1 308 8 EDO EDO . K 3 EDO A 1 310 10 EDO EDO . L 3 EDO A 1 311 11 EDO EDO . M 3 EDO A 1 312 12 EDO EDO . N 3 EDO A 1 314 14 EDO EDO . O 3 EDO A 1 315 15 EDO EDO . P 3 EDO A 1 316 16 EDO EDO . Q 3 EDO A 1 320 20 EDO EDO . R 4 NAG B 1 122 1 NAG NAG . S 2 SO4 B 1 201 1 SO4 SO4 . T 2 SO4 B 1 203 3 SO4 SO4 . U 2 SO4 B 1 205 5 SO4 SO4 . V 3 EDO B 1 301 1 EDO EDO . W 3 EDO B 1 306 6 EDO EDO . X 3 EDO B 1 309 9 EDO EDO . Y 3 EDO B 1 313 13 EDO EDO . Z 3 EDO B 1 317 17 EDO EDO . AA 3 EDO B 1 318 18 EDO EDO . BA 3 EDO B 1 319 19 EDO EDO . CA 3 EDO B 1 321 21 EDO EDO . DA 5 HOH A 1 321 1 HOH HOH . DA 5 HOH A 2 322 2 HOH HOH . DA 5 HOH A 3 323 6 HOH HOH . DA 5 HOH A 4 324 10 HOH HOH . DA 5 HOH A 5 325 11 HOH HOH . DA 5 HOH A 6 326 13 HOH HOH . DA 5 HOH A 7 327 14 HOH HOH . DA 5 HOH A 8 328 17 HOH HOH . DA 5 HOH A 9 329 18 HOH HOH . DA 5 HOH A 10 330 19 HOH HOH . DA 5 HOH A 11 331 20 HOH HOH . DA 5 HOH A 12 332 21 HOH HOH . DA 5 HOH A 13 333 23 HOH HOH . DA 5 HOH A 14 334 26 HOH HOH . DA 5 HOH A 15 335 27 HOH HOH . DA 5 HOH A 16 336 29 HOH HOH . DA 5 HOH A 17 337 31 HOH HOH . DA 5 HOH A 18 338 32 HOH HOH . DA 5 HOH A 19 339 33 HOH HOH . DA 5 HOH A 20 340 35 HOH HOH . DA 5 HOH A 21 341 36 HOH HOH . DA 5 HOH A 22 342 38 HOH HOH . DA 5 HOH A 23 343 39 HOH HOH . DA 5 HOH A 24 344 40 HOH HOH . DA 5 HOH A 25 345 41 HOH HOH . DA 5 HOH A 26 346 42 HOH HOH . DA 5 HOH A 27 347 43 HOH HOH . DA 5 HOH A 28 348 44 HOH HOH . DA 5 HOH A 29 349 46 HOH HOH . DA 5 HOH A 30 350 48 HOH HOH . DA 5 HOH A 31 351 49 HOH HOH . DA 5 HOH A 32 352 50 HOH HOH . DA 5 HOH A 33 353 54 HOH HOH . DA 5 HOH A 34 354 56 HOH HOH . DA 5 HOH A 35 355 58 HOH HOH . DA 5 HOH A 36 356 59 HOH HOH . DA 5 HOH A 37 357 64 HOH HOH . DA 5 HOH A 38 358 65 HOH HOH . DA 5 HOH A 39 359 69 HOH HOH . DA 5 HOH A 40 360 72 HOH HOH . DA 5 HOH A 41 361 75 HOH HOH . DA 5 HOH A 42 362 76 HOH HOH . DA 5 HOH A 43 363 77 HOH HOH . DA 5 HOH A 44 364 78 HOH HOH . DA 5 HOH A 45 365 79 HOH HOH . DA 5 HOH A 46 366 81 HOH HOH . DA 5 HOH A 47 367 83 HOH HOH . DA 5 HOH A 48 368 86 HOH HOH . DA 5 HOH A 49 369 87 HOH HOH . DA 5 HOH A 50 370 90 HOH HOH . DA 5 HOH A 51 371 91 HOH HOH . DA 5 HOH A 52 372 92 HOH HOH . DA 5 HOH A 53 373 93 HOH HOH . DA 5 HOH A 54 374 99 HOH HOH . DA 5 HOH A 55 375 101 HOH HOH . DA 5 HOH A 56 376 105 HOH HOH . DA 5 HOH A 57 377 106 HOH HOH . DA 5 HOH A 58 378 107 HOH HOH . DA 5 HOH A 59 379 108 HOH HOH . DA 5 HOH A 60 380 109 HOH HOH . DA 5 HOH A 61 381 113 HOH HOH . DA 5 HOH A 62 382 116 HOH HOH . DA 5 HOH A 63 383 119 HOH HOH . DA 5 HOH A 64 384 120 HOH HOH . DA 5 HOH A 65 385 121 HOH HOH . DA 5 HOH A 66 386 123 HOH HOH . EA 5 HOH B 1 322 3 HOH HOH . EA 5 HOH B 2 323 4 HOH HOH . EA 5 HOH B 3 324 5 HOH HOH . EA 5 HOH B 4 325 7 HOH HOH . EA 5 HOH B 5 326 8 HOH HOH . EA 5 HOH B 6 327 9 HOH HOH . EA 5 HOH B 7 328 12 HOH HOH . EA 5 HOH B 8 329 15 HOH HOH . EA 5 HOH B 9 330 16 HOH HOH . EA 5 HOH B 10 331 22 HOH HOH . EA 5 HOH B 11 332 24 HOH HOH . EA 5 HOH B 12 333 25 HOH HOH . EA 5 HOH B 13 334 28 HOH HOH . EA 5 HOH B 14 335 30 HOH HOH . EA 5 HOH B 15 336 34 HOH HOH . EA 5 HOH B 16 337 37 HOH HOH . EA 5 HOH B 17 338 45 HOH HOH . EA 5 HOH B 18 339 47 HOH HOH . EA 5 HOH B 19 340 51 HOH HOH . EA 5 HOH B 20 341 52 HOH HOH . EA 5 HOH B 21 342 53 HOH HOH . EA 5 HOH B 22 343 55 HOH HOH . EA 5 HOH B 23 344 57 HOH HOH . EA 5 HOH B 24 345 60 HOH HOH . EA 5 HOH B 25 346 61 HOH HOH . EA 5 HOH B 26 347 62 HOH HOH . EA 5 HOH B 27 348 63 HOH HOH . EA 5 HOH B 28 349 66 HOH HOH . EA 5 HOH B 29 350 67 HOH HOH . EA 5 HOH B 30 351 68 HOH HOH . EA 5 HOH B 31 352 70 HOH HOH . EA 5 HOH B 32 353 71 HOH HOH . EA 5 HOH B 33 354 73 HOH HOH . EA 5 HOH B 34 355 74 HOH HOH . EA 5 HOH B 35 356 80 HOH HOH . EA 5 HOH B 36 357 82 HOH HOH . EA 5 HOH B 37 358 84 HOH HOH . EA 5 HOH B 38 359 85 HOH HOH . EA 5 HOH B 39 360 88 HOH HOH . EA 5 HOH B 40 361 89 HOH HOH . EA 5 HOH B 41 362 94 HOH HOH . EA 5 HOH B 42 363 95 HOH HOH . EA 5 HOH B 43 364 96 HOH HOH . EA 5 HOH B 44 365 97 HOH HOH . EA 5 HOH B 45 366 98 HOH HOH . EA 5 HOH B 46 367 100 HOH HOH . EA 5 HOH B 47 368 102 HOH HOH . EA 5 HOH B 48 369 103 HOH HOH . EA 5 HOH B 49 370 104 HOH HOH . EA 5 HOH B 50 371 110 HOH HOH . EA 5 HOH B 51 372 111 HOH HOH . EA 5 HOH B 52 373 112 HOH HOH . EA 5 HOH B 53 374 114 HOH HOH . EA 5 HOH B 54 375 115 HOH HOH . EA 5 HOH B 55 376 117 HOH HOH . EA 5 HOH B 56 377 118 HOH HOH . EA 5 HOH B 57 378 124 HOH HOH . EA 5 HOH B 58 379 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . R 4 18.95 18.35 -10.816 1 61.41 ? C1 NAG 122 B 1 HETATM 2 C C2 NAG . . . R 4 20.174 17.518 -11.258 1 61.46 ? C2 NAG 122 B 1 HETATM 3 C C3 NAG . . . R 4 21.44 17.939 -10.468 1 60.39 ? C3 NAG 122 B 1 HETATM 4 C C4 NAG . . . R 4 21.616 19.436 -10.805 1 59.88 ? C4 NAG 122 B 1 HETATM 5 C C5 NAG . . . R 4 20.429 20.073 -10.1 1 59.36 ? C5 NAG 122 B 1 HETATM 6 C C6 NAG . . . R 4 20.547 21.564 -9.811 1 60.2 ? C6 NAG 122 B 1 HETATM 7 C C7 NAG . . . R 4 19.912 15.256 -12.166 1 62.93 ? C7 NAG 122 B 1 HETATM 8 C C8 NAG . . . R 4 20.497 15.753 -13.471 1 62.46 ? C8 NAG 122 B 1 HETATM 9 N N2 NAG . . . R 4 19.782 16.112 -11.124 1 62.16 ? N2 NAG 122 B 1 HETATM 10 O O1 NAG . . . R 4 17.78 18.047 -11.609 1 61.43 ? O1 NAG 122 B 1 HETATM 11 O O3 NAG . . . R 4 22.605 17.166 -10.765 1 58.64 ? O3 NAG 122 B 1 HETATM 12 O O4 NAG . . . R 4 22.87 20.055 -10.471 1 60.08 ? O4 NAG 122 B 1 HETATM 13 O O5 NAG . . . R 4 19.271 19.75 -10.88 1 59.01 ? O5 NAG 122 B 1 HETATM 14 O O6 NAG . . . R 4 20.653 22.318 -11.022 1 61.77 ? O6 NAG 122 B 1 HETATM 15 O O7 NAG . . . R 4 19.581 14.093 -12.074 1 62.22 ? O7 NAG 122 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 15 #