data_2GUM # _model_server_result.job_id d1pxXHGSW4xzY_w3PUq65A _model_server_result.datetime_utc '2025-01-10 15:03:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2gum # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":731}' # _entry.id 2GUM # _exptl.entry_id 2GUM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 67.04 _cell.angle_beta 77.99 _cell.angle_gamma 70.31 _cell.entry_id 2GUM _cell.length_a 84.959 _cell.length_b 100.039 _cell.length_c 100.133 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2GUM _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 14 A CYS 116 1_555 A SG CYS 471 A CYS 573 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.677 ? disulf ? disulf2 A SG CYS 31 A CYS 133 1_555 A SG CYS 427 A CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf3 A SG CYS 105 A CYS 207 1_555 A SG CYS 169 A CYS 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 A SG CYS 262 A CYS 364 1_555 A SG CYS 310 A CYS 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 A SG CYS 494 A CYS 596 1_555 A SG CYS 531 A CYS 633 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf6 B SG CYS 14 B CYS 116 1_555 B SG CYS 471 B CYS 573 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf7 B SG CYS 31 B CYS 133 1_555 B SG CYS 427 B CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf8 B SG CYS 105 B CYS 207 1_555 B SG CYS 169 B CYS 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf9 B SG CYS 262 B CYS 364 1_555 B SG CYS 310 B CYS 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf10 B SG CYS 494 B CYS 596 1_555 B SG CYS 531 B CYS 633 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf11 C SG CYS 14 C CYS 116 1_555 C SG CYS 471 C CYS 573 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? disulf ? disulf12 C SG CYS 31 C CYS 133 1_555 C SG CYS 427 C CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf13 C SG CYS 105 C CYS 207 1_555 C SG CYS 169 C CYS 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf14 C SG CYS 262 C CYS 364 1_555 C SG CYS 310 C CYS 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf15 C SG CYS 494 C CYS 596 1_555 C SG CYS 531 C CYS 633 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 A OD1 ASN 438 A ASN 540 1_555 D NA NA . A NA 731 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.915 ? metalc ? metalc2 D NA NA . A NA 731 1_555 H O HOH . A HOH 757 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.812 ? metalc ? metalc3 B OD1 ASN 438 B ASN 540 1_555 E NA NA . B NA 731 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.737 ? metalc ? metalc4 E NA NA . B NA 731 1_555 I O HOH . B HOH 741 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? metalc ? metalc5 F NA NA . B NA 732 1_555 I O HOH . B HOH 748 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.914 ? metalc ? metalc6 F NA NA . B NA 732 1_555 I O HOH . B HOH 763 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc7 C OD1 ASN 438 C ASN 540 1_555 G NA NA . C NA 731 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? metalc ? metalc8 G NA NA . C NA 731 1_555 J O HOH . C HOH 745 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2GUM _atom_sites.fract_transf_matrix[1][1] 0.01177 _atom_sites.fract_transf_matrix[1][2] -0.004212 _atom_sites.fract_transf_matrix[1][3] -0.00111 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010617 _atom_sites.fract_transf_matrix[2][3] -0.003934 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010889 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NA A 1 731 178 NA NA1 . E 2 NA B 1 731 150 NA NA1 . F 2 NA B 1 732 151 NA NA1 . G 2 NA C 1 731 158 NA NA1 . H 3 HOH A 1 732 6 HOH TIP . H 3 HOH A 2 733 8 HOH TIP . H 3 HOH A 3 734 12 HOH TIP . H 3 HOH A 4 735 13 HOH TIP . H 3 HOH A 5 736 15 HOH TIP . H 3 HOH A 6 737 17 HOH TIP . H 3 HOH A 7 738 21 HOH TIP . H 3 HOH A 8 739 27 HOH TIP . H 3 HOH A 9 740 29 HOH TIP . H 3 HOH A 10 741 30 HOH TIP . H 3 HOH A 11 742 33 HOH TIP . H 3 HOH A 12 743 36 HOH TIP . H 3 HOH A 13 744 38 HOH TIP . H 3 HOH A 14 745 39 HOH TIP . H 3 HOH A 15 746 44 HOH TIP . H 3 HOH A 16 747 46 HOH TIP . H 3 HOH A 17 748 50 HOH TIP . H 3 HOH A 18 749 53 HOH TIP . H 3 HOH A 19 750 54 HOH TIP . H 3 HOH A 20 751 57 HOH TIP . H 3 HOH A 21 752 59 HOH TIP . H 3 HOH A 22 753 63 HOH TIP . H 3 HOH A 23 754 65 HOH TIP . H 3 HOH A 24 755 67 HOH TIP . H 3 HOH A 25 756 69 HOH TIP . H 3 HOH A 26 757 77 HOH TIP . H 3 HOH A 27 758 80 HOH TIP . H 3 HOH A 28 759 94 HOH TIP . H 3 HOH A 29 760 95 HOH TIP . H 3 HOH A 30 761 97 HOH TIP . H 3 HOH A 31 762 104 HOH TIP . H 3 HOH A 32 763 107 HOH TIP . H 3 HOH A 33 764 109 HOH TIP . H 3 HOH A 34 765 110 HOH TIP . H 3 HOH A 35 766 119 HOH TIP . H 3 HOH A 36 767 120 HOH TIP . H 3 HOH A 37 768 123 HOH TIP . H 3 HOH A 38 769 132 HOH TIP . H 3 HOH A 39 770 144 HOH TIP . H 3 HOH A 40 771 149 HOH TIP . H 3 HOH A 41 772 157 HOH TIP . H 3 HOH A 42 773 165 HOH TIP . H 3 HOH A 43 774 166 HOH TIP . H 3 HOH A 44 775 172 HOH TIP . H 3 HOH A 45 776 187 HOH TIP . H 3 HOH A 46 777 188 HOH TIP . H 3 HOH A 47 778 189 HOH TIP . H 3 HOH A 48 779 190 HOH TIP . H 3 HOH A 49 780 191 HOH TIP . H 3 HOH A 50 781 192 HOH TIP . H 3 HOH A 51 782 197 HOH TIP . H 3 HOH A 52 783 200 HOH TIP . H 3 HOH A 53 784 204 HOH TIP . H 3 HOH A 54 785 205 HOH TIP . H 3 HOH A 55 786 208 HOH TIP . H 3 HOH A 56 787 212 HOH TIP . H 3 HOH A 57 788 213 HOH TIP . H 3 HOH A 58 789 215 HOH TIP . H 3 HOH A 59 790 219 HOH TIP . H 3 HOH A 60 791 220 HOH TIP . H 3 HOH A 61 792 223 HOH TIP . H 3 HOH A 62 793 224 HOH TIP . I 3 HOH B 1 733 1 HOH TIP . I 3 HOH B 2 734 2 HOH TIP . I 3 HOH B 3 735 3 HOH TIP . I 3 HOH B 4 736 4 HOH TIP . I 3 HOH B 5 737 10 HOH TIP . I 3 HOH B 6 738 18 HOH TIP . I 3 HOH B 7 739 19 HOH TIP . I 3 HOH B 8 740 22 HOH TIP . I 3 HOH B 9 741 23 HOH TIP . I 3 HOH B 10 742 31 HOH TIP . I 3 HOH B 11 743 32 HOH TIP . I 3 HOH B 12 744 34 HOH TIP . I 3 HOH B 13 745 35 HOH TIP . I 3 HOH B 14 746 42 HOH TIP . I 3 HOH B 15 747 43 HOH TIP . I 3 HOH B 16 748 56 HOH TIP . I 3 HOH B 17 749 58 HOH TIP . I 3 HOH B 18 750 60 HOH TIP . I 3 HOH B 19 751 61 HOH TIP . I 3 HOH B 20 752 64 HOH TIP . I 3 HOH B 21 753 70 HOH TIP . I 3 HOH B 22 754 72 HOH TIP . I 3 HOH B 23 755 75 HOH TIP . I 3 HOH B 24 756 78 HOH TIP . I 3 HOH B 25 757 79 HOH TIP . I 3 HOH B 26 758 85 HOH TIP . I 3 HOH B 27 759 86 HOH TIP . I 3 HOH B 28 760 87 HOH TIP . I 3 HOH B 29 761 90 HOH TIP . I 3 HOH B 30 762 91 HOH TIP . I 3 HOH B 31 763 93 HOH TIP . I 3 HOH B 32 764 99 HOH TIP . I 3 HOH B 33 765 100 HOH TIP . I 3 HOH B 34 766 101 HOH TIP . I 3 HOH B 35 767 105 HOH TIP . I 3 HOH B 36 768 113 HOH TIP . I 3 HOH B 37 769 115 HOH TIP . I 3 HOH B 38 770 116 HOH TIP . I 3 HOH B 39 771 122 HOH TIP . I 3 HOH B 40 772 124 HOH TIP . I 3 HOH B 41 773 125 HOH TIP . I 3 HOH B 42 774 126 HOH TIP . I 3 HOH B 43 775 129 HOH TIP . I 3 HOH B 44 776 134 HOH TIP . I 3 HOH B 45 777 135 HOH TIP . I 3 HOH B 46 778 138 HOH TIP . I 3 HOH B 47 779 143 HOH TIP . I 3 HOH B 48 780 146 HOH TIP . I 3 HOH B 49 781 147 HOH TIP . I 3 HOH B 50 782 153 HOH TIP . I 3 HOH B 51 783 154 HOH TIP . I 3 HOH B 52 784 155 HOH TIP . I 3 HOH B 53 785 156 HOH TIP . I 3 HOH B 54 786 160 HOH TIP . I 3 HOH B 55 787 162 HOH TIP . I 3 HOH B 56 788 164 HOH TIP . I 3 HOH B 57 789 171 HOH TIP . I 3 HOH B 58 790 173 HOH TIP . I 3 HOH B 59 791 175 HOH TIP . I 3 HOH B 60 792 176 HOH TIP . I 3 HOH B 61 793 177 HOH TIP . I 3 HOH B 62 794 179 HOH TIP . I 3 HOH B 63 795 180 HOH TIP . I 3 HOH B 64 796 181 HOH TIP . I 3 HOH B 65 797 186 HOH TIP . I 3 HOH B 66 798 193 HOH TIP . I 3 HOH B 67 799 194 HOH TIP . I 3 HOH B 68 800 195 HOH TIP . I 3 HOH B 69 801 196 HOH TIP . I 3 HOH B 70 802 198 HOH TIP . I 3 HOH B 71 803 199 HOH TIP . I 3 HOH B 72 804 201 HOH TIP . I 3 HOH B 73 805 203 HOH TIP . I 3 HOH B 74 806 206 HOH TIP . I 3 HOH B 75 807 210 HOH TIP . I 3 HOH B 76 808 211 HOH TIP . I 3 HOH B 77 809 216 HOH TIP . I 3 HOH B 78 810 217 HOH TIP . I 3 HOH B 79 811 218 HOH TIP . I 3 HOH B 80 812 225 HOH TIP . I 3 HOH B 81 813 226 HOH TIP . I 3 HOH B 82 814 227 HOH TIP . J 3 HOH C 1 732 5 HOH TIP . J 3 HOH C 2 733 7 HOH TIP . J 3 HOH C 3 734 9 HOH TIP . J 3 HOH C 4 735 11 HOH TIP . J 3 HOH C 5 736 14 HOH TIP . J 3 HOH C 6 737 16 HOH TIP . J 3 HOH C 7 738 20 HOH TIP . J 3 HOH C 8 739 24 HOH TIP . J 3 HOH C 9 740 25 HOH TIP . J 3 HOH C 10 741 26 HOH TIP . J 3 HOH C 11 742 28 HOH TIP . J 3 HOH C 12 743 37 HOH TIP . J 3 HOH C 13 744 40 HOH TIP . J 3 HOH C 14 745 41 HOH TIP . J 3 HOH C 15 746 45 HOH TIP . J 3 HOH C 16 747 47 HOH TIP . J 3 HOH C 17 748 48 HOH TIP . J 3 HOH C 18 749 49 HOH TIP . J 3 HOH C 19 750 51 HOH TIP . J 3 HOH C 20 751 52 HOH TIP . J 3 HOH C 21 752 55 HOH TIP . J 3 HOH C 22 753 62 HOH TIP . J 3 HOH C 23 754 66 HOH TIP . J 3 HOH C 24 755 68 HOH TIP . J 3 HOH C 25 756 71 HOH TIP . J 3 HOH C 26 757 73 HOH TIP . J 3 HOH C 27 758 74 HOH TIP . J 3 HOH C 28 759 76 HOH TIP . J 3 HOH C 29 760 81 HOH TIP . J 3 HOH C 30 761 82 HOH TIP . J 3 HOH C 31 762 83 HOH TIP . J 3 HOH C 32 763 84 HOH TIP . J 3 HOH C 33 764 88 HOH TIP . J 3 HOH C 34 765 89 HOH TIP . J 3 HOH C 35 766 92 HOH TIP . J 3 HOH C 36 767 96 HOH TIP . J 3 HOH C 37 768 98 HOH TIP . J 3 HOH C 38 769 102 HOH TIP . J 3 HOH C 39 770 103 HOH TIP . J 3 HOH C 40 771 106 HOH TIP . J 3 HOH C 41 772 108 HOH TIP . J 3 HOH C 42 773 111 HOH TIP . J 3 HOH C 43 774 112 HOH TIP . J 3 HOH C 44 775 114 HOH TIP . J 3 HOH C 45 776 117 HOH TIP . J 3 HOH C 46 777 118 HOH TIP . J 3 HOH C 47 778 121 HOH TIP . J 3 HOH C 48 779 127 HOH TIP . J 3 HOH C 49 780 128 HOH TIP . J 3 HOH C 50 781 130 HOH TIP . J 3 HOH C 51 782 131 HOH TIP . J 3 HOH C 52 783 133 HOH TIP . J 3 HOH C 53 784 136 HOH TIP . J 3 HOH C 54 785 137 HOH TIP . J 3 HOH C 55 786 139 HOH TIP . J 3 HOH C 56 787 140 HOH TIP . J 3 HOH C 57 788 141 HOH TIP . J 3 HOH C 58 789 142 HOH TIP . J 3 HOH C 59 790 145 HOH TIP . J 3 HOH C 60 791 148 HOH TIP . J 3 HOH C 61 792 152 HOH TIP . J 3 HOH C 62 793 159 HOH TIP . J 3 HOH C 63 794 161 HOH TIP . J 3 HOH C 64 795 163 HOH TIP . J 3 HOH C 65 796 167 HOH TIP . J 3 HOH C 66 797 168 HOH TIP . J 3 HOH C 67 798 169 HOH TIP . J 3 HOH C 68 799 170 HOH TIP . J 3 HOH C 69 800 174 HOH TIP . J 3 HOH C 70 801 182 HOH TIP . J 3 HOH C 71 802 183 HOH TIP . J 3 HOH C 72 803 184 HOH TIP . J 3 HOH C 73 804 185 HOH TIP . J 3 HOH C 74 805 202 HOH TIP . J 3 HOH C 75 806 207 HOH TIP . J 3 HOH C 76 807 209 HOH TIP . J 3 HOH C 77 808 214 HOH TIP . J 3 HOH C 78 809 221 HOH TIP . J 3 HOH C 79 810 222 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 36.792 _atom_site.Cartn_y 52.131 _atom_site.Cartn_z 39.469 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 42.03 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 731 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 261 _model_server_stats.query_time_ms 664 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 1 #