data_2GUN # _model_server_result.job_id ygvWNIHMey7zKRfVZOsyog _model_server_result.datetime_utc '2024-10-20 22:41:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2gun # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":521}' # _entry.id 2GUN # _exptl.entry_id 2GUN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 202.34 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SPERMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2GUN _cell.length_a 47.231 _cell.length_b 47.231 _cell.length_c 24.464 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2GUN _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' DC 3 A DC 3 1_555 A P T2T 4 A T2T 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.61 ? covale ? covale2 A O3' T2T 4 A T2T 4 1_555 A P CBR 5 A CBR 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.613 ? covale ? covale3 A O3' CBR 5 A CBR 6 1_555 A P DT 6 A DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.609 ? hydrog WATSON-CRICK hydrog1 A N3 DT 1 A DT 1 1_555 B N1 A 9 B A 18 1_555 ? ? ? ? A ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A O4 DT 1 A DT 1 1_555 B N6 A 9 B A 18 1_555 ? ? ? ? A ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N3 DT 2 A DT 2 1_555 B N1 A 8 B A 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A O4 DT 2 A DT 2 1_555 B N6 A 8 B A 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N3 DC 3 A DC 3 1_555 B N1 G 7 B G 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N4 DC 3 A DC 3 1_555 B O6 G 7 B G 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A O2 DC 3 A DC 3 1_555 B N2 G 7 B G 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N3 CBR 5 A CBR 6 1_555 B N1 G 4 B G 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N4 CBR 5 A CBR 6 1_555 B O6 G 4 B G 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O2 CBR 5 A CBR 6 1_555 B N2 G 4 B G 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N3 DT 6 A DT 7 1_555 B N1 A 3 B A 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O4 DT 6 A DT 7 1_555 B N6 A 3 B A 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N3 DT 7 A DT 8 1_555 B N1 A 2 B A 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O4 DT 7 A DT 8 1_555 B N6 A 2 B A 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N3 DC 8 A DC 9 1_555 B N1 G 1 B G 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N4 DC 8 A DC 9 1_555 B O6 G 1 B G 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O2 DC 8 A DC 9 1_555 B N2 G 1 B G 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H26 N4' _chem_comp.formula_weight 202.34 _chem_comp.id SPM _chem_comp.mon_nstd_flag . _chem_comp.name SPERMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 SPM sing 189 n n N1 HN11 SPM sing 190 n n N1 HN12 SPM sing 191 n n C2 C3 SPM sing 192 n n C2 H21 SPM sing 193 n n C2 H22 SPM sing 194 n n C3 C4 SPM sing 195 n n C3 H31 SPM sing 196 n n C3 H32 SPM sing 197 n n C4 N5 SPM sing 198 n n C4 H41 SPM sing 199 n n C4 H42 SPM sing 200 n n N5 C6 SPM sing 201 n n N5 HN5 SPM sing 202 n n C6 C7 SPM sing 203 n n C6 H61 SPM sing 204 n n C6 H62 SPM sing 205 n n C7 C8 SPM sing 206 n n C7 H71 SPM sing 207 n n C7 H72 SPM sing 208 n n C8 C9 SPM sing 209 n n C8 H81 SPM sing 210 n n C8 H82 SPM sing 211 n n C9 N10 SPM sing 212 n n C9 H91 SPM sing 213 n n C9 H92 SPM sing 214 n n N10 C11 SPM sing 215 n n N10 HN0 SPM sing 216 n n C11 C12 SPM sing 217 n n C11 H111 SPM sing 218 n n C11 H112 SPM sing 219 n n C12 C13 SPM sing 220 n n C12 H121 SPM sing 221 n n C12 H122 SPM sing 222 n n C13 N14 SPM sing 223 n n C13 H131 SPM sing 224 n n C13 H132 SPM sing 225 n n N14 HN41 SPM sing 226 n n N14 HN42 SPM sing 227 n n # _atom_sites.entry_id 2GUN _atom_sites.fract_transf_matrix[1][1] 0.021173 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021173 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.040876 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 3CO B 1 21 21 3CO 3CO . D 3 3CO B 1 22 22 3CO 3CO . E 4 SPM B 1 521 521 SPM SPM . F 5 HOH A 1 25 25 HOH HOH . F 5 HOH A 2 26 26 HOH HOH . F 5 HOH A 3 32 32 HOH HOH . F 5 HOH A 4 33 33 HOH HOH . F 5 HOH A 5 37 37 HOH HOH . F 5 HOH A 6 38 38 HOH HOH . G 5 HOH B 1 23 23 HOH HOH . G 5 HOH B 2 24 24 HOH HOH . G 5 HOH B 3 27 27 HOH HOH . G 5 HOH B 4 28 28 HOH HOH . G 5 HOH B 5 29 29 HOH HOH . G 5 HOH B 6 30 30 HOH HOH . G 5 HOH B 7 31 31 HOH HOH . G 5 HOH B 8 34 34 HOH HOH . G 5 HOH B 9 36 36 HOH HOH . G 5 HOH B 10 39 39 HOH HOH . G 5 HOH B 11 40 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 SPM . A . E 4 12.34 12.594 -13.104 0.5 82.69 ? N1 SPM 521 B 1 HETATM 2 N N1 SPM . B . E 4 16.283 9.911 -11.402 0.5 81.61 ? N1 SPM 521 B 1 HETATM 3 C C2 SPM . A . E 4 13.208 11.385 -13.003 0.5 82.93 ? C2 SPM 521 B 1 HETATM 4 C C2 SPM . B . E 4 16.374 11.18 -12.168 0.5 81.86 ? C2 SPM 521 B 1 HETATM 5 C C3 SPM . A . E 4 14.39 11.479 -13.952 0.5 82.8 ? C3 SPM 521 B 1 HETATM 6 C C3 SPM . B . E 4 15.168 11.379 -13.073 0.5 82.22 ? C3 SPM 521 B 1 HETATM 7 C C4 SPM . . . E 4 15.179 12.766 -13.717 1 82.98 ? C4 SPM 521 B 1 HETATM 8 N N5 SPM . . . E 4 16.268 12.935 -14.689 1 83.84 ? N5 SPM 521 B 1 HETATM 9 C C6 SPM . . . E 4 17.269 13.898 -14.223 1 83.1 ? C6 SPM 521 B 1 HETATM 10 C C7 SPM . . . E 4 16.701 15.297 -14.008 1 83.25 ? C7 SPM 521 B 1 HETATM 11 C C8 SPM . . . E 4 16.084 15.853 -15.278 1 84.54 ? C8 SPM 521 B 1 HETATM 12 C C9 SPM . . . E 4 15.69 17.317 -15.111 1 85.43 ? C9 SPM 521 B 1 HETATM 13 N N10 SPM . . . E 4 15.248 17.9 -16.374 1 86.04 ? N10 SPM 521 B 1 HETATM 14 C C11 SPM . . . E 4 15.504 19.341 -16.405 1 87.21 ? C11 SPM 521 B 1 HETATM 15 C C12 SPM . . . E 4 17.002 19.682 -16.361 1 88.17 ? C12 SPM 521 B 1 HETATM 16 C C13 SPM . . . E 4 17.248 21.171 -16.651 1 88.21 ? C13 SPM 521 B 1 HETATM 17 N N14 SPM . . . E 4 18.694 21.538 -16.628 1 88.04 ? N14 SPM 521 B 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #