data_2GUP
#
_model_server_result.job_id            ZkYkBUI2banjFbX6TopDQw 
_model_server_result.datetime_utc      '2025-08-31 14:23:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2gup 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":293}' 
#
_entry.id    2GUP 
#
_exptl.entry_id    2GUP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              122.143 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2GUP 
_cell.length_a            54.678 
_cell.length_b            114.665 
_cell.length_c            117.677 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2GUP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 58.8385 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
_pdbx_entity_branch_link.link_id                     1 
_pdbx_entity_branch_link.details                     ? 
_pdbx_entity_branch_link.entity_id                   2 
_pdbx_entity_branch_link.entity_branch_list_num_1    1 
_pdbx_entity_branch_link.entity_branch_list_num_2    2 
_pdbx_entity_branch_link.comp_id_1                   GLC 
_pdbx_entity_branch_link.comp_id_2                   FRU 
_pdbx_entity_branch_link.atom_id_1                   C1 
_pdbx_entity_branch_link.leaving_atom_id_1           O1 
_pdbx_entity_branch_link.atom_stereo_config_1        . 
_pdbx_entity_branch_link.atom_id_2                   O2 
_pdbx_entity_branch_link.leaving_atom_id_2           HO2 
_pdbx_entity_branch_link.atom_stereo_config_2        . 
_pdbx_entity_branch_link.value_order                 sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n B GLC 1 B 1 GLC L 11 SUC 
2 n B FRU 2 B 2 FRU L 11 SUC 
2 n C GLC 1 C 1 GLC L 21 SUC 
2 n C FRU 2 C 2 FRU L 21 SUC 
2 n D GLC 1 D 1 GLC L 31 SUC 
2 n D FRU 2 D 2 FRU L 31 SUC 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C MSE 4 A MSE 1 1_555 A N THR 5 A THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale2 A C ALA 59 A ALA 56 1_555 A N MSE 60 A MSE 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
covale ? covale3 A C MSE 60 A MSE 57 1_555 A N SER 61 A SER 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? 
covale ? covale4 A C ALA 133 A ALA 130 1_555 A N MSE 134 A MSE 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale5 A C MSE 134 A MSE 131 1_555 A N ILE 135 A ILE 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale6 A C TYR 153 A TYR 150 1_555 A N MSE 154 A MSE 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale7 A C MSE 154 A MSE 151 1_555 A N THR 155 A THR 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? 
covale ? covale8 A C ASN 174 A ASN 171 1_555 A N MSE 175 A MSE 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale9 A C MSE 175 A MSE 172 1_555 A N VAL 176 A VAL 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale10 A C ARG 210 A ARG 207 1_555 A N MSE 211 A MSE 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale11 A C MSE 211 A MSE 208 1_555 A N ASN 212 A ASN 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale12 B C1 GLC . B GLC 1 1_555 B O2 FRU . B FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 sing 
covale ? covale13 C C1 GLC . C GLC 1 1_555 C O2 FRU . C FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 sing 
covale ? covale14 D C1 GLC . D GLC 1 1_555 D O2 FRU . D FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 sing 
#
_chem_comp.formula           'C4 H12 N O3 1' 
_chem_comp.formula_weight    122.143 
_chem_comp.id                TRS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'TRIS BUFFER' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C C1 TRS sing 401 n n 
C C2 TRS sing 402 n n 
C C3 TRS sing 403 n n 
C N TRS sing 404 n n 
C1 O1 TRS sing 405 n n 
C1 H11 TRS sing 406 n n 
C1 H12 TRS sing 407 n n 
C2 O2 TRS sing 408 n n 
C2 H21 TRS sing 409 n n 
C2 H22 TRS sing 410 n n 
C3 O3 TRS sing 411 n n 
C3 H31 TRS sing 412 n n 
C3 H32 TRS sing 413 n n 
N HN1 TRS sing 414 n n 
N HN2 TRS sing 415 n n 
N HN3 TRS sing 416 n n 
O1 HO1 TRS sing 417 n n 
O2 HO2 TRS sing 418 n n 
O3 HO3 TRS sing 419 n n 
#
_atom_sites.entry_id                     2GUP 
_atom_sites.fract_transf_matrix[1][1]    0.018289 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008721 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008498 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 TRS A 1 293 1 TRS TRS . 
F 4 HOH A 1 294 1 HOH HOH . 
F 4 HOH A 2 295 2 HOH HOH . 
F 4 HOH A 3 296 3 HOH HOH . 
F 4 HOH A 4 297 4 HOH HOH . 
F 4 HOH A 5 298 5 HOH HOH . 
F 4 HOH A 6 299 6 HOH HOH . 
F 4 HOH A 7 300 7 HOH HOH . 
F 4 HOH A 8 301 8 HOH HOH . 
F 4 HOH A 9 302 9 HOH HOH . 
F 4 HOH A 10 303 10 HOH HOH . 
F 4 HOH A 11 304 11 HOH HOH . 
F 4 HOH A 12 305 12 HOH HOH . 
F 4 HOH A 13 306 13 HOH HOH . 
F 4 HOH A 14 307 14 HOH HOH . 
F 4 HOH A 15 308 15 HOH HOH . 
F 4 HOH A 16 309 16 HOH HOH . 
F 4 HOH A 17 310 17 HOH HOH . 
F 4 HOH A 18 311 18 HOH HOH . 
F 4 HOH A 19 312 19 HOH HOH . 
F 4 HOH A 20 313 20 HOH HOH . 
F 4 HOH A 21 314 21 HOH HOH . 
F 4 HOH A 22 315 22 HOH HOH . 
F 4 HOH A 23 316 24 HOH HOH . 
F 4 HOH A 24 317 25 HOH HOH . 
F 4 HOH A 25 318 26 HOH HOH . 
F 4 HOH A 26 319 27 HOH HOH . 
F 4 HOH A 27 320 28 HOH HOH . 
F 4 HOH A 28 321 29 HOH HOH . 
F 4 HOH A 29 322 30 HOH HOH . 
F 4 HOH A 30 323 31 HOH HOH . 
F 4 HOH A 31 324 32 HOH HOH . 
F 4 HOH A 32 325 33 HOH HOH . 
F 4 HOH A 33 326 34 HOH HOH . 
F 4 HOH A 34 327 35 HOH HOH . 
F 4 HOH A 35 328 36 HOH HOH . 
F 4 HOH A 36 329 37 HOH HOH . 
F 4 HOH A 37 330 38 HOH HOH . 
F 4 HOH A 38 331 39 HOH HOH . 
F 4 HOH A 39 332 40 HOH HOH . 
F 4 HOH A 40 333 41 HOH HOH . 
F 4 HOH A 41 334 42 HOH HOH . 
F 4 HOH A 42 335 43 HOH HOH . 
F 4 HOH A 43 336 44 HOH HOH . 
F 4 HOH A 44 337 45 HOH HOH . 
F 4 HOH A 45 338 46 HOH HOH . 
F 4 HOH A 46 339 47 HOH HOH . 
F 4 HOH A 47 340 48 HOH HOH . 
F 4 HOH A 48 341 49 HOH HOH . 
F 4 HOH A 49 342 50 HOH HOH . 
F 4 HOH A 50 343 51 HOH HOH . 
F 4 HOH A 51 344 52 HOH HOH . 
F 4 HOH A 52 345 53 HOH HOH . 
F 4 HOH A 53 346 54 HOH HOH . 
F 4 HOH A 54 347 55 HOH HOH . 
F 4 HOH A 55 348 56 HOH HOH . 
F 4 HOH A 56 349 57 HOH HOH . 
F 4 HOH A 57 350 58 HOH HOH . 
F 4 HOH A 58 351 59 HOH HOH . 
F 4 HOH A 59 352 60 HOH HOH . 
F 4 HOH A 60 353 61 HOH HOH . 
F 4 HOH A 61 354 62 HOH HOH . 
F 4 HOH A 62 355 63 HOH HOH . 
F 4 HOH A 63 356 64 HOH HOH . 
F 4 HOH A 64 357 65 HOH HOH . 
F 4 HOH A 65 358 66 HOH HOH . 
F 4 HOH A 66 359 67 HOH HOH . 
F 4 HOH A 67 360 68 HOH HOH . 
F 4 HOH A 68 361 69 HOH HOH . 
F 4 HOH A 69 362 70 HOH HOH . 
F 4 HOH A 70 363 71 HOH HOH . 
F 4 HOH A 71 364 72 HOH HOH . 
F 4 HOH A 72 365 73 HOH HOH . 
F 4 HOH A 73 366 74 HOH HOH . 
F 4 HOH A 74 367 75 HOH HOH . 
F 4 HOH A 75 368 76 HOH HOH . 
F 4 HOH A 76 369 77 HOH HOH . 
F 4 HOH A 77 370 78 HOH HOH . 
F 4 HOH A 78 371 79 HOH HOH . 
F 4 HOH A 79 372 80 HOH HOH . 
F 4 HOH A 80 373 81 HOH HOH . 
F 4 HOH A 81 374 82 HOH HOH . 
F 4 HOH A 82 375 83 HOH HOH . 
F 4 HOH A 83 376 84 HOH HOH . 
F 4 HOH A 84 377 85 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C TRS . . . E 3 0.19 36.687 9.631 1 69.83 ? C TRS 293 A 1 
HETATM 2 C C1 TRS . . . E 3 0.791 37.982 10.228 1 70.09 ? C1 TRS 293 A 1 
HETATM 3 C C2 TRS . . . E 3 -0.83 37.11 8.549 1 69.33 ? C2 TRS 293 A 1 
HETATM 4 C C3 TRS . . . E 3 -0.24 35.69 10.751 1 69.5 ? C3 TRS 293 A 1 
HETATM 5 N N TRS . . . E 3 1.254 36.005 8.879 1 68.8 ? N TRS 293 A 1 
HETATM 6 O O1 TRS . . . E 3 -0.15 39.038 10.462 1 72.4 ? O1 TRS 293 A 1 
HETATM 7 O O2 TRS . . . E 3 -2.206 36.961 8.848 1 69.49 ? O2 TRS 293 A 1 
HETATM 8 O O3 TRS . . . E 3 -1.484 34.988 10.573 1 69.26 ? O3 TRS 293 A 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           350 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           8 
#