data_2GVD
#
_model_server_result.job_id            3qiwA_k7Qlq9OdF2OM1zNA 
_model_server_result.datetime_utc      '2024-10-27 00:34:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2gvd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":396}' 
#
_entry.id    2GVD 
#
_exptl.entry_id    2GVD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2GVD 
_cell.length_a            118.2 
_cell.length_b            133.4 
_cell.length_c            70.6 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2GVD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 77 A CYS 432 1_555 A SG CYS 89 A CYS 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
metalc ? metalc1 A OD2 ASP 41 A ASP 396 1_555 E MN MN . A MN 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? 
metalc ? metalc2 A OD1 ASP 41 A ASP 396 1_555 E MN MN . A MN 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? 
metalc ? metalc3 A O ILE 42 A ILE 397 1_555 E MN MN . A MN 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? 
metalc ? metalc4 A OD1 ASP 85 A ASP 440 1_555 D MN MN . A MN 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? 
metalc ? metalc5 A OD2 ASP 85 A ASP 440 1_555 E MN MN . A MN 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? 
metalc ? metalc6 E MN MN . A MN 582 1_555 G O2B 128 . A 128 584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
metalc ? metalc7 E MN MN . A MN 582 1_555 G O3B 128 . A 128 584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? 
metalc ? metalc8 C OG SER 54 C SER 54 1_555 H MN MN . C MN 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? 
metalc ? metalc9 C OG1 THR 204 C THR 204 1_555 H MN MN . C MN 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc10 J O2B GSP . C GSP 395 1_555 H MN MN . C MN 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? 
metalc ? metalc11 J O2G GSP . C GSP 395 1_555 H MN MN . C MN 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2GVD 
_atom_sites.fract_transf_matrix[1][1]    0.00846 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007496 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014164 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 MN A 1 581 502 MN MN . 
E 4 MN A 1 582 503 MN MN . 
F 5 FKP A 1 583 1 FKP FKP . 
G 6 128 A 1 584 10 128 128 . 
H 4 MN C 1 396 396 MN MN . 
I 7 CL C 1 397 397 CL CL . 
J 8 GSP C 1 395 395 GSP GSP . 
K 9 HOH A 1 1 1 HOH HOH . 
K 9 HOH A 2 11 11 HOH HOH . 
K 9 HOH A 3 19 19 HOH HOH . 
K 9 HOH A 4 21 21 HOH HOH . 
K 9 HOH A 5 23 23 HOH HOH . 
K 9 HOH A 6 31 31 HOH HOH . 
K 9 HOH A 7 42 42 HOH HOH . 
K 9 HOH A 8 45 45 HOH HOH . 
K 9 HOH A 9 56 56 HOH HOH . 
K 9 HOH A 10 63 63 HOH HOH . 
K 9 HOH A 11 68 68 HOH HOH . 
L 9 HOH B 1 2 2 HOH HOH . 
L 9 HOH B 2 4 4 HOH HOH . 
L 9 HOH B 3 5 5 HOH HOH . 
L 9 HOH B 4 7 7 HOH HOH . 
L 9 HOH B 5 9 9 HOH HOH . 
L 9 HOH B 6 10 10 HOH HOH . 
L 9 HOH B 7 12 12 HOH HOH . 
L 9 HOH B 8 13 13 HOH HOH . 
L 9 HOH B 9 15 15 HOH HOH . 
L 9 HOH B 10 16 16 HOH HOH . 
L 9 HOH B 11 18 18 HOH HOH . 
L 9 HOH B 12 28 28 HOH HOH . 
L 9 HOH B 13 36 36 HOH HOH . 
L 9 HOH B 14 41 41 HOH HOH . 
L 9 HOH B 15 57 57 HOH HOH . 
M 9 HOH C 1 398 3 HOH HOH . 
M 9 HOH C 2 399 6 HOH HOH . 
M 9 HOH C 3 400 8 HOH HOH . 
M 9 HOH C 4 401 14 HOH HOH . 
M 9 HOH C 5 402 17 HOH HOH . 
M 9 HOH C 6 403 20 HOH HOH . 
M 9 HOH C 7 404 22 HOH HOH . 
M 9 HOH C 8 405 24 HOH HOH . 
M 9 HOH C 9 406 25 HOH HOH . 
M 9 HOH C 10 407 26 HOH HOH . 
M 9 HOH C 11 408 29 HOH HOH . 
M 9 HOH C 12 409 30 HOH HOH . 
M 9 HOH C 13 410 38 HOH HOH . 
M 9 HOH C 14 411 39 HOH HOH . 
M 9 HOH C 15 412 40 HOH HOH . 
M 9 HOH C 16 413 43 HOH HOH . 
M 9 HOH C 17 414 44 HOH HOH . 
M 9 HOH C 18 415 47 HOH HOH . 
M 9 HOH C 19 416 48 HOH HOH . 
M 9 HOH C 20 417 50 HOH HOH . 
M 9 HOH C 21 418 54 HOH HOH . 
M 9 HOH C 22 419 59 HOH HOH . 
M 9 HOH C 23 420 64 HOH HOH . 
M 9 HOH C 24 421 65 HOH HOH . 
M 9 HOH C 25 422 67 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         H 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               21.184 
_atom_site.Cartn_y               2.692 
_atom_site.Cartn_z               30.447 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        40.21 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           396 
_atom_site.auth_asym_id          C 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#