data_2GVD
#
_model_server_result.job_id            jkWDNaY6B8xlKRRvSLiniw 
_model_server_result.datetime_utc      '2024-10-27 00:32:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2gvd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":583}' 
#
_entry.id    2GVD 
#
_exptl.entry_id    2GVD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              550.727 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            METHYLPIPERAZINOFORSKOLIN 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2GVD 
_cell.length_a            118.2 
_cell.length_b            133.4 
_cell.length_c            70.6 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2GVD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 77 A CYS 432 1_555 A SG CYS 89 A CYS 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
metalc ? metalc1 A OD2 ASP 41 A ASP 396 1_555 E MN MN . A MN 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? 
metalc ? metalc2 A OD1 ASP 41 A ASP 396 1_555 E MN MN . A MN 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? 
metalc ? metalc3 A O ILE 42 A ILE 397 1_555 E MN MN . A MN 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? 
metalc ? metalc4 A OD1 ASP 85 A ASP 440 1_555 D MN MN . A MN 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? 
metalc ? metalc5 A OD2 ASP 85 A ASP 440 1_555 E MN MN . A MN 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? 
metalc ? metalc6 E MN MN . A MN 582 1_555 G O2B 128 . A 128 584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
metalc ? metalc7 E MN MN . A MN 582 1_555 G O3B 128 . A 128 584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? 
metalc ? metalc8 C OG SER 54 C SER 54 1_555 H MN MN . C MN 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? 
metalc ? metalc9 C OG1 THR 204 C THR 204 1_555 H MN MN . C MN 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc10 J O2B GSP . C GSP 395 1_555 H MN MN . C MN 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? 
metalc ? metalc11 J O2G GSP . C GSP 395 1_555 H MN MN . C MN 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? 
#
_chem_comp.formula           'C30 H50 N2 O7' 
_chem_comp.formula_weight    550.727 
_chem_comp.id                FKP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              METHYLPIPERAZINOFORSKOLIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O2 FKP sing 150 n n 
C1 C2 FKP sing 151 n n 
C1 C10 FKP sing 152 n n 
C1 H1 FKP sing 153 n n 
O2 HO2 FKP sing 154 n n 
C2 C3 FKP sing 155 n n 
C2 H21 FKP sing 156 n n 
C2 H22 FKP sing 157 n n 
C3 C4 FKP sing 158 n n 
C3 H31 FKP sing 159 n n 
C3 H32 FKP sing 160 n n 
C4 C5 FKP sing 161 n n 
C4 C18 FKP sing 162 n n 
C4 C19 FKP sing 163 n n 
C5 C6 FKP sing 164 n n 
C5 C10 FKP sing 165 n n 
C5 H5 FKP sing 166 n n 
C6 O3 FKP sing 167 n n 
C6 C7 FKP sing 168 n n 
C6 H6 FKP sing 169 n n 
O3 HO3 FKP sing 170 n n 
C7 O4 FKP sing 171 n n 
C7 C8 FKP sing 172 n n 
C7 H7 FKP sing 173 n n 
O4 C21 FKP sing 174 n n 
C8 O1 FKP sing 175 n n 
C8 C9 FKP sing 176 n n 
C8 C17 FKP sing 177 n n 
O1 C13 FKP sing 178 n n 
C9 O6 FKP sing 179 n n 
C9 C10 FKP sing 180 n n 
C9 C11 FKP sing 181 n n 
O6 HO6 FKP sing 182 n n 
C10 C20 FKP sing 183 n n 
C11 O7 FKP doub 184 n n 
C11 C12 FKP sing 185 n n 
C12 C13 FKP sing 186 n n 
C12 H121 FKP sing 187 n n 
C12 H122 FKP sing 188 n n 
C13 C14 FKP sing 189 n n 
C13 C16 FKP sing 190 n n 
C14 C15 FKP doub 191 n n 
C14 H14 FKP sing 192 n n 
C15 H151 FKP sing 193 n n 
C15 H152 FKP sing 194 n n 
C16 H161 FKP sing 195 n n 
C16 H162 FKP sing 196 n n 
C16 H163 FKP sing 197 n n 
C17 H171 FKP sing 198 n n 
C17 H172 FKP sing 199 n n 
C17 H173 FKP sing 200 n n 
C18 H181 FKP sing 201 n n 
C18 H182 FKP sing 202 n n 
C18 H183 FKP sing 203 n n 
C19 H191 FKP sing 204 n n 
C19 H192 FKP sing 205 n n 
C19 H193 FKP sing 206 n n 
C20 H201 FKP sing 207 n n 
C20 H202 FKP sing 208 n n 
C20 H203 FKP sing 209 n n 
C21 O5 FKP doub 210 n n 
C21 C22 FKP sing 211 n n 
C22 C23 FKP sing 212 n n 
C22 H221 FKP sing 213 n n 
C22 H222 FKP sing 214 n n 
C23 C24 FKP sing 215 n n 
C23 H231 FKP sing 216 n n 
C23 H232 FKP sing 217 n n 
C24 C25 FKP sing 218 n n 
C24 H241 FKP sing 219 n n 
C24 H242 FKP sing 220 n n 
C25 N1 FKP sing 221 n n 
C25 H251 FKP sing 222 n n 
C25 H252 FKP sing 223 n n 
N1 C26 FKP sing 224 n n 
N1 C29 FKP sing 225 n n 
C26 C27 FKP sing 226 n n 
C26 H261 FKP sing 227 n n 
C26 H262 FKP sing 228 n n 
C27 N2 FKP sing 229 n n 
C27 H271 FKP sing 230 n n 
C27 H272 FKP sing 231 n n 
N2 C28 FKP sing 232 n n 
N2 C30 FKP sing 233 n n 
C28 C29 FKP sing 234 n n 
C28 H281 FKP sing 235 n n 
C28 H282 FKP sing 236 n n 
C29 H291 FKP sing 237 n n 
C29 H292 FKP sing 238 n n 
C30 H301 FKP sing 239 n n 
C30 H302 FKP sing 240 n n 
C30 H303 FKP sing 241 n n 
#
_atom_sites.entry_id                     2GVD 
_atom_sites.fract_transf_matrix[1][1]    0.00846 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007496 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014164 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 MN A 1 581 502 MN MN . 
E 4 MN A 1 582 503 MN MN . 
F 5 FKP A 1 583 1 FKP FKP . 
G 6 128 A 1 584 10 128 128 . 
H 4 MN C 1 396 396 MN MN . 
I 7 CL C 1 397 397 CL CL . 
J 8 GSP C 1 395 395 GSP GSP . 
K 9 HOH A 1 1 1 HOH HOH . 
K 9 HOH A 2 11 11 HOH HOH . 
K 9 HOH A 3 19 19 HOH HOH . 
K 9 HOH A 4 21 21 HOH HOH . 
K 9 HOH A 5 23 23 HOH HOH . 
K 9 HOH A 6 31 31 HOH HOH . 
K 9 HOH A 7 42 42 HOH HOH . 
K 9 HOH A 8 45 45 HOH HOH . 
K 9 HOH A 9 56 56 HOH HOH . 
K 9 HOH A 10 63 63 HOH HOH . 
K 9 HOH A 11 68 68 HOH HOH . 
L 9 HOH B 1 2 2 HOH HOH . 
L 9 HOH B 2 4 4 HOH HOH . 
L 9 HOH B 3 5 5 HOH HOH . 
L 9 HOH B 4 7 7 HOH HOH . 
L 9 HOH B 5 9 9 HOH HOH . 
L 9 HOH B 6 10 10 HOH HOH . 
L 9 HOH B 7 12 12 HOH HOH . 
L 9 HOH B 8 13 13 HOH HOH . 
L 9 HOH B 9 15 15 HOH HOH . 
L 9 HOH B 10 16 16 HOH HOH . 
L 9 HOH B 11 18 18 HOH HOH . 
L 9 HOH B 12 28 28 HOH HOH . 
L 9 HOH B 13 36 36 HOH HOH . 
L 9 HOH B 14 41 41 HOH HOH . 
L 9 HOH B 15 57 57 HOH HOH . 
M 9 HOH C 1 398 3 HOH HOH . 
M 9 HOH C 2 399 6 HOH HOH . 
M 9 HOH C 3 400 8 HOH HOH . 
M 9 HOH C 4 401 14 HOH HOH . 
M 9 HOH C 5 402 17 HOH HOH . 
M 9 HOH C 6 403 20 HOH HOH . 
M 9 HOH C 7 404 22 HOH HOH . 
M 9 HOH C 8 405 24 HOH HOH . 
M 9 HOH C 9 406 25 HOH HOH . 
M 9 HOH C 10 407 26 HOH HOH . 
M 9 HOH C 11 408 29 HOH HOH . 
M 9 HOH C 12 409 30 HOH HOH . 
M 9 HOH C 13 410 38 HOH HOH . 
M 9 HOH C 14 411 39 HOH HOH . 
M 9 HOH C 15 412 40 HOH HOH . 
M 9 HOH C 16 413 43 HOH HOH . 
M 9 HOH C 17 414 44 HOH HOH . 
M 9 HOH C 18 415 47 HOH HOH . 
M 9 HOH C 19 416 48 HOH HOH . 
M 9 HOH C 20 417 50 HOH HOH . 
M 9 HOH C 21 418 54 HOH HOH . 
M 9 HOH C 22 419 59 HOH HOH . 
M 9 HOH C 23 420 64 HOH HOH . 
M 9 HOH C 24 421 65 HOH HOH . 
M 9 HOH C 25 422 67 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 FKP . . . F 5 42.6 -12.46 51.982 1 25.88 ? C1 FKP 583 A 1 
HETATM 2 O O2 FKP . . . F 5 42.568 -13.648 51.188 1 28.77 ? O2 FKP 583 A 1 
HETATM 3 C C2 FKP . . . F 5 43.506 -12.757 53.227 1 25.71 ? C2 FKP 583 A 1 
HETATM 4 C C3 FKP . . . F 5 44.962 -13.181 52.754 1 24.13 ? C3 FKP 583 A 1 
HETATM 5 C C4 FKP . . . F 5 45.639 -12.035 51.937 1 23.26 ? C4 FKP 583 A 1 
HETATM 6 C C5 FKP . . . F 5 44.713 -11.673 50.658 1 22.52 ? C5 FKP 583 A 1 
HETATM 7 C C6 FKP . . . F 5 45.382 -10.483 49.759 1 23.82 ? C6 FKP 583 A 1 
HETATM 8 O O3 FKP . . . F 5 45.687 -9.279 50.455 1 20.88 ? O3 FKP 583 A 1 
HETATM 9 C C7 FKP . . . F 5 44.419 -10.205 48.498 1 26.4 ? C7 FKP 583 A 1 
HETATM 10 O O4 FKP . . . F 5 44.925 -9.153 47.646 1 33.63 ? O4 FKP 583 A 1 
HETATM 11 C C8 FKP . . . F 5 42.937 -9.8 48.841 1 24.47 ? C8 FKP 583 A 1 
HETATM 12 O O1 FKP . . . F 5 42.186 -9.637 47.609 1 26.1 ? O1 FKP 583 A 1 
HETATM 13 C C9 FKP . . . F 5 42.326 -10.934 49.739 1 23.8 ? C9 FKP 583 A 1 
HETATM 14 O O6 FKP . . . F 5 42.344 -12.1 48.902 1 25.98 ? O6 FKP 583 A 1 
HETATM 15 C C10 FKP . . . F 5 43.17 -11.257 51.124 1 23.06 ? C10 FKP 583 A 1 
HETATM 16 C C11 FKP . . . F 5 40.808 -10.521 49.997 1 26.51 ? C11 FKP 583 A 1 
HETATM 17 O O7 FKP . . . F 5 40.229 -10.827 51.017 1 33.83 ? O7 FKP 583 A 1 
HETATM 18 C C12 FKP . . . F 5 40.002 -9.717 48.916 1 27.26 ? C12 FKP 583 A 1 
HETATM 19 C C13 FKP . . . F 5 40.759 -9.323 47.586 1 27.11 ? C13 FKP 583 A 1 
HETATM 20 C C14 FKP . . . F 5 40.118 -10.118 46.456 1 24.94 ? C14 FKP 583 A 1 
HETATM 21 C C15 FKP . . . F 5 40.395 -11.394 46.219 1 24.71 ? C15 FKP 583 A 1 
HETATM 22 C C16 FKP . . . F 5 40.51 -7.848 47.233 1 28.25 ? C16 FKP 583 A 1 
HETATM 23 C C17 FKP . . . F 5 43.066 -8.353 49.438 1 26.77 ? C17 FKP 583 A 1 
HETATM 24 C C18 FKP . . . F 5 47.027 -12.525 51.502 1 23.19 ? C18 FKP 583 A 1 
HETATM 25 C C19 FKP . . . F 5 46.033 -11.032 53.032 1 25.77 ? C19 FKP 583 A 1 
HETATM 26 C C20 FKP . . . F 5 43.128 -10.016 52.108 1 18.71 ? C20 FKP 583 A 1 
HETATM 27 C C21 FKP . . . F 5 46.203 -9.235 47.173 1 48.93 ? C21 FKP 583 A 1 
HETATM 28 O O5 FKP . . . F 5 46.631 -10.264 46.68 1 52.17 ? O5 FKP 583 A 1 
HETATM 29 C C22 FKP . . . F 5 47.067 -7.922 47.296 1 57.91 ? C22 FKP 583 A 1 
HETATM 30 C C23 FKP . . . F 5 47.819 -7.61 48.669 1 65.6 ? C23 FKP 583 A 1 
HETATM 31 C C24 FKP . . . F 5 48.905 -8.685 49.07 1 72.52 ? C24 FKP 583 A 1 
HETATM 32 C C25 FKP . . . F 5 49.819 -8.272 50.292 1 77.57 ? C25 FKP 583 A 1 
HETATM 33 N N1 FKP . . . F 5 49.842 -9.295 51.424 1 78.71 ? N1 FKP 583 A 1 
HETATM 34 C C26 FKP . . . F 5 49.617 -8.563 52.739 1 77.2 ? C26 FKP 583 A 1 
HETATM 35 C C27 FKP . . . F 5 49.619 -9.394 53.84 1 73.44 ? C27 FKP 583 A 1 
HETATM 36 N N2 FKP . . . F 5 50.89 -10.176 53.964 1 69.61 ? N2 FKP 583 A 1 
HETATM 37 C C28 FKP . . . F 5 51.14 -11.006 52.738 1 70.88 ? C28 FKP 583 A 1 
HETATM 38 C C29 FKP . . . F 5 51.154 -10.083 51.468 1 76.94 ? C29 FKP 583 A 1 
HETATM 39 C C30 FKP . . . F 5 50.805 -11.01 55.178 1 64.07 ? C30 FKP 583 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           39 
#