data_2GVV # _model_server_result.job_id srkrcVsLcg5j6VcG4_Demg _model_server_result.datetime_utc '2025-03-06 09:02:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2gvv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 2GVV # _exptl.entry_id 2GVV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2GVV _cell.length_a 43.6 _cell.length_b 83.02 _cell.length_c 87.47 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2GVV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 21 A GLU 21 1_555 B CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc2 A OD1 ASN 120 A ASN 120 1_555 B CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc3 A OD1 ASN 175 A ASN 175 1_555 B CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc4 A OD1 ASP 229 A ASP 229 1_555 B CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc5 A OD2 ASP 232 A ASP 232 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc6 A O LEU 273 A LEU 273 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc7 A ND1 HIS 274 A HIS 274 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc8 B CA CA . A CA 500 1_555 D OAA DI9 . A DI9 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc9 B CA CA . A CA 500 1_555 E O HOH . A HOH 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc10 B CA CA . A CA 500 1_555 E O HOH . A HOH 532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc11 C CA CA . A CA 501 1_555 E O HOH . A HOH 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc12 C CA CA . A CA 501 1_555 E O HOH . A HOH 548 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc13 C CA CA . A CA 501 1_555 E O HOH . A HOH 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2GVV _atom_sites.fract_transf_matrix[1][1] 0.022936 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012045 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011432 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 500 500 CA CA . C 2 CA A 1 501 501 CA CA . D 3 DI9 A 1 502 502 DI9 DI9 . E 4 HOH A 1 503 1 HOH HOH . E 4 HOH A 2 504 2 HOH HOH . E 4 HOH A 3 505 3 HOH HOH . E 4 HOH A 4 506 4 HOH HOH . E 4 HOH A 5 507 5 HOH HOH . E 4 HOH A 6 508 6 HOH HOH . E 4 HOH A 7 509 7 HOH HOH . E 4 HOH A 8 510 9 HOH HOH . E 4 HOH A 9 511 11 HOH HOH . E 4 HOH A 10 512 12 HOH HOH . E 4 HOH A 11 513 14 HOH HOH . E 4 HOH A 12 514 15 HOH HOH . E 4 HOH A 13 515 16 HOH HOH . E 4 HOH A 14 516 17 HOH HOH . E 4 HOH A 15 517 18 HOH HOH . E 4 HOH A 16 518 19 HOH HOH . E 4 HOH A 17 519 20 HOH HOH . E 4 HOH A 18 520 21 HOH HOH . E 4 HOH A 19 521 22 HOH HOH . E 4 HOH A 20 522 23 HOH HOH . E 4 HOH A 21 523 24 HOH HOH . E 4 HOH A 22 524 25 HOH HOH . E 4 HOH A 23 525 26 HOH HOH . E 4 HOH A 24 526 27 HOH HOH . E 4 HOH A 25 527 28 HOH HOH . E 4 HOH A 26 528 29 HOH HOH . E 4 HOH A 27 529 30 HOH HOH . E 4 HOH A 28 530 31 HOH HOH . E 4 HOH A 29 531 32 HOH HOH . E 4 HOH A 30 532 34 HOH HOH . E 4 HOH A 31 533 36 HOH HOH . E 4 HOH A 32 534 37 HOH HOH . E 4 HOH A 33 535 38 HOH HOH . E 4 HOH A 34 536 39 HOH HOH . E 4 HOH A 35 537 40 HOH HOH . E 4 HOH A 36 538 41 HOH HOH . E 4 HOH A 37 539 42 HOH HOH . E 4 HOH A 38 540 43 HOH HOH . E 4 HOH A 39 541 44 HOH HOH . E 4 HOH A 40 542 45 HOH HOH . E 4 HOH A 41 543 46 HOH HOH . E 4 HOH A 42 544 47 HOH HOH . E 4 HOH A 43 545 48 HOH HOH . E 4 HOH A 44 546 49 HOH HOH . E 4 HOH A 45 547 50 HOH HOH . E 4 HOH A 46 548 52 HOH HOH . E 4 HOH A 47 549 53 HOH HOH . E 4 HOH A 48 550 54 HOH HOH . E 4 HOH A 49 551 55 HOH HOH . E 4 HOH A 50 552 56 HOH HOH . E 4 HOH A 51 553 57 HOH HOH . E 4 HOH A 52 554 58 HOH HOH . E 4 HOH A 53 555 59 HOH HOH . E 4 HOH A 54 556 60 HOH HOH . E 4 HOH A 55 557 61 HOH HOH . E 4 HOH A 56 558 62 HOH HOH . E 4 HOH A 57 559 63 HOH HOH . E 4 HOH A 58 560 64 HOH HOH . E 4 HOH A 59 561 65 HOH HOH . E 4 HOH A 60 562 66 HOH HOH . E 4 HOH A 61 563 67 HOH HOH . E 4 HOH A 62 564 68 HOH HOH . E 4 HOH A 63 565 69 HOH HOH . E 4 HOH A 64 566 70 HOH HOH . E 4 HOH A 65 567 71 HOH HOH . E 4 HOH A 66 568 72 HOH HOH . E 4 HOH A 67 569 73 HOH HOH . E 4 HOH A 68 570 74 HOH HOH . E 4 HOH A 69 571 75 HOH HOH . E 4 HOH A 70 572 76 HOH HOH . E 4 HOH A 71 573 77 HOH HOH . E 4 HOH A 72 574 78 HOH HOH . E 4 HOH A 73 575 79 HOH HOH . E 4 HOH A 74 576 80 HOH HOH . E 4 HOH A 75 577 81 HOH HOH . E 4 HOH A 76 578 82 HOH HOH . E 4 HOH A 77 579 83 HOH HOH . E 4 HOH A 78 580 84 HOH HOH . E 4 HOH A 79 581 85 HOH HOH . E 4 HOH A 80 582 86 HOH HOH . E 4 HOH A 81 583 87 HOH HOH . E 4 HOH A 82 584 88 HOH HOH . E 4 HOH A 83 585 89 HOH HOH . E 4 HOH A 84 586 90 HOH HOH . E 4 HOH A 85 587 91 HOH HOH . E 4 HOH A 86 588 92 HOH HOH . E 4 HOH A 87 589 93 HOH HOH . E 4 HOH A 88 590 94 HOH HOH . E 4 HOH A 89 591 95 HOH HOH . E 4 HOH A 90 592 96 HOH HOH . E 4 HOH A 91 593 97 HOH HOH . E 4 HOH A 92 594 98 HOH HOH . E 4 HOH A 93 595 99 HOH HOH . E 4 HOH A 94 596 100 HOH HOH . E 4 HOH A 95 597 101 HOH HOH . E 4 HOH A 96 598 102 HOH HOH . E 4 HOH A 97 599 103 HOH HOH . E 4 HOH A 98 600 104 HOH HOH . E 4 HOH A 99 601 105 HOH HOH . E 4 HOH A 100 602 106 HOH HOH . E 4 HOH A 101 603 107 HOH HOH . E 4 HOH A 102 604 108 HOH HOH . E 4 HOH A 103 605 109 HOH HOH . E 4 HOH A 104 606 110 HOH HOH . E 4 HOH A 105 607 111 HOH HOH . E 4 HOH A 106 608 112 HOH HOH . E 4 HOH A 107 609 113 HOH HOH . E 4 HOH A 108 610 114 HOH HOH . E 4 HOH A 109 611 115 HOH HOH . E 4 HOH A 110 612 116 HOH HOH . E 4 HOH A 111 613 117 HOH HOH . E 4 HOH A 112 614 118 HOH HOH . E 4 HOH A 113 615 119 HOH HOH . E 4 HOH A 114 616 120 HOH HOH . E 4 HOH A 115 617 121 HOH HOH . E 4 HOH A 116 618 122 HOH HOH . E 4 HOH A 117 619 123 HOH HOH . E 4 HOH A 118 620 124 HOH HOH . E 4 HOH A 119 621 125 HOH HOH . E 4 HOH A 120 622 126 HOH HOH . E 4 HOH A 121 623 127 HOH HOH . E 4 HOH A 122 624 128 HOH HOH . E 4 HOH A 123 625 129 HOH HOH . E 4 HOH A 124 626 130 HOH HOH . E 4 HOH A 125 627 131 HOH HOH . E 4 HOH A 126 628 132 HOH HOH . E 4 HOH A 127 629 133 HOH HOH . E 4 HOH A 128 630 134 HOH HOH . E 4 HOH A 129 631 135 HOH HOH . E 4 HOH A 130 632 136 HOH HOH . E 4 HOH A 131 633 137 HOH HOH . E 4 HOH A 132 634 138 HOH HOH . E 4 HOH A 133 635 139 HOH HOH . E 4 HOH A 134 636 141 HOH HOH . E 4 HOH A 135 637 142 HOH HOH . E 4 HOH A 136 638 143 HOH HOH . E 4 HOH A 137 639 144 HOH HOH . E 4 HOH A 138 640 145 HOH HOH . E 4 HOH A 139 641 146 HOH HOH . E 4 HOH A 140 642 147 HOH HOH . E 4 HOH A 141 643 148 HOH HOH . E 4 HOH A 142 644 149 HOH HOH . E 4 HOH A 143 645 150 HOH HOH . E 4 HOH A 144 646 151 HOH HOH . E 4 HOH A 145 647 152 HOH HOH . E 4 HOH A 146 648 153 HOH HOH . E 4 HOH A 147 649 154 HOH HOH . E 4 HOH A 148 650 155 HOH HOH . E 4 HOH A 149 651 156 HOH HOH . E 4 HOH A 150 652 157 HOH HOH . E 4 HOH A 151 653 158 HOH HOH . E 4 HOH A 152 654 159 HOH HOH . E 4 HOH A 153 655 160 HOH HOH . E 4 HOH A 154 656 161 HOH HOH . E 4 HOH A 155 657 162 HOH HOH . E 4 HOH A 156 658 163 HOH HOH . E 4 HOH A 157 659 164 HOH HOH . E 4 HOH A 158 660 165 HOH HOH . E 4 HOH A 159 661 166 HOH HOH . E 4 HOH A 160 662 167 HOH HOH . E 4 HOH A 161 663 168 HOH HOH . E 4 HOH A 162 664 169 HOH HOH . E 4 HOH A 163 665 170 HOH HOH . E 4 HOH A 164 666 171 HOH HOH . E 4 HOH A 165 667 172 HOH HOH . E 4 HOH A 166 668 173 HOH HOH . E 4 HOH A 167 669 174 HOH HOH . E 4 HOH A 168 670 175 HOH HOH . E 4 HOH A 169 671 176 HOH HOH . E 4 HOH A 170 672 177 HOH HOH . E 4 HOH A 171 673 178 HOH HOH . E 4 HOH A 172 674 179 HOH HOH . E 4 HOH A 173 675 187 HOH HOH . E 4 HOH A 174 676 188 HOH HOH . E 4 HOH A 175 677 189 HOH HOH . E 4 HOH A 176 678 190 HOH HOH . E 4 HOH A 177 679 191 HOH HOH . E 4 HOH A 178 680 192 HOH HOH . E 4 HOH A 179 681 193 HOH HOH . E 4 HOH A 180 682 194 HOH HOH . E 4 HOH A 181 683 195 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 5.655 _atom_site.Cartn_y 5.919 _atom_site.Cartn_z 62.692 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 14.11 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #