data_2GVX # _model_server_result.job_id xihxAqObuJX2552oK8PcUg _model_server_result.datetime_utc '2025-04-07 14:04:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2gvx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 2GVX # _exptl.entry_id 2GVX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2GVX _cell.length_a 42.6 _cell.length_b 82.7 _cell.length_c 86.7 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2GVX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 21 A GLU 21 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? metalc ? metalc2 A OD1 ASN 120 A ASN 120 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc3 A OD1 ASP 175 A ASP 175 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc4 A ND2 ASN 229 A ASN 229 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc5 A OD2 ASP 232 A ASP 232 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc6 A O LEU 273 A LEU 273 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc7 A ND1 HIS 274 A HIS 274 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc8 B CA CA . A CA 501 1_555 D O HOH . A HOH 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.898 ? metalc ? metalc9 B CA CA . A CA 501 1_555 D O HOH . A HOH 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.907 ? metalc ? metalc10 B CA CA . A CA 501 1_555 D O HOH . A HOH 622 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.903 ? metalc ? metalc11 C CA CA . A CA 502 1_555 D O HOH . A HOH 533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? metalc ? metalc12 C CA CA . A CA 502 1_555 D O HOH . A HOH 579 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.887 ? metalc ? metalc13 C CA CA . A CA 502 1_555 D O HOH . A HOH 693 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.751 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2GVX _atom_sites.fract_transf_matrix[1][1] 0.023474 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012092 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011534 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 501 501 CA CA . C 2 CA A 1 502 502 CA CA . D 3 HOH A 1 503 1 HOH HOH . D 3 HOH A 2 504 2 HOH HOH . D 3 HOH A 3 505 3 HOH HOH . D 3 HOH A 4 506 8 HOH HOH . D 3 HOH A 5 507 9 HOH HOH . D 3 HOH A 6 508 10 HOH HOH . D 3 HOH A 7 509 11 HOH HOH . D 3 HOH A 8 510 12 HOH HOH . D 3 HOH A 9 511 13 HOH HOH . D 3 HOH A 10 512 15 HOH HOH . D 3 HOH A 11 513 16 HOH HOH . D 3 HOH A 12 514 18 HOH HOH . D 3 HOH A 13 515 19 HOH HOH . D 3 HOH A 14 516 20 HOH HOH . D 3 HOH A 15 517 22 HOH HOH . D 3 HOH A 16 518 23 HOH HOH . D 3 HOH A 17 519 24 HOH HOH . D 3 HOH A 18 520 25 HOH HOH . D 3 HOH A 19 521 26 HOH HOH . D 3 HOH A 20 522 29 HOH HOH . D 3 HOH A 21 523 31 HOH HOH . D 3 HOH A 22 524 36 HOH HOH . D 3 HOH A 23 525 37 HOH HOH . D 3 HOH A 24 526 39 HOH HOH . D 3 HOH A 25 527 40 HOH HOH . D 3 HOH A 26 528 43 HOH HOH . D 3 HOH A 27 529 44 HOH HOH . D 3 HOH A 28 530 45 HOH HOH . D 3 HOH A 29 531 46 HOH HOH . D 3 HOH A 30 532 47 HOH HOH . D 3 HOH A 31 533 48 HOH HOH . D 3 HOH A 32 534 49 HOH HOH . D 3 HOH A 33 535 51 HOH HOH . D 3 HOH A 34 536 52 HOH HOH . D 3 HOH A 35 537 55 HOH HOH . D 3 HOH A 36 538 56 HOH HOH . D 3 HOH A 37 539 57 HOH HOH . D 3 HOH A 38 540 58 HOH HOH . D 3 HOH A 39 541 59 HOH HOH . D 3 HOH A 40 542 60 HOH HOH . D 3 HOH A 41 543 61 HOH HOH . D 3 HOH A 42 544 66 HOH HOH . D 3 HOH A 43 545 67 HOH HOH . D 3 HOH A 44 546 72 HOH HOH . D 3 HOH A 45 547 73 HOH HOH . D 3 HOH A 46 548 75 HOH HOH . D 3 HOH A 47 549 77 HOH HOH . D 3 HOH A 48 550 81 HOH HOH . D 3 HOH A 49 551 83 HOH HOH . D 3 HOH A 50 552 86 HOH HOH . D 3 HOH A 51 553 87 HOH HOH . D 3 HOH A 52 554 88 HOH HOH . D 3 HOH A 53 555 91 HOH HOH . D 3 HOH A 54 556 92 HOH HOH . D 3 HOH A 55 557 93 HOH HOH . D 3 HOH A 56 558 94 HOH HOH . D 3 HOH A 57 559 96 HOH HOH . D 3 HOH A 58 560 100 HOH HOH . D 3 HOH A 59 561 101 HOH HOH . D 3 HOH A 60 562 102 HOH HOH . D 3 HOH A 61 563 103 HOH HOH . D 3 HOH A 62 564 104 HOH HOH . D 3 HOH A 63 565 105 HOH HOH . D 3 HOH A 64 566 106 HOH HOH . D 3 HOH A 65 567 107 HOH HOH . D 3 HOH A 66 568 108 HOH HOH . D 3 HOH A 67 569 109 HOH HOH . D 3 HOH A 68 570 111 HOH HOH . D 3 HOH A 69 571 112 HOH HOH . D 3 HOH A 70 572 113 HOH HOH . D 3 HOH A 71 573 114 HOH HOH . D 3 HOH A 72 574 115 HOH HOH . D 3 HOH A 73 575 116 HOH HOH . D 3 HOH A 74 576 117 HOH HOH . D 3 HOH A 75 577 118 HOH HOH . D 3 HOH A 76 578 119 HOH HOH . D 3 HOH A 77 579 120 HOH HOH . D 3 HOH A 78 580 121 HOH HOH . D 3 HOH A 79 581 122 HOH HOH . D 3 HOH A 80 582 123 HOH HOH . D 3 HOH A 81 583 124 HOH HOH . D 3 HOH A 82 584 126 HOH HOH . D 3 HOH A 83 585 127 HOH HOH . D 3 HOH A 84 586 128 HOH HOH . D 3 HOH A 85 587 130 HOH HOH . D 3 HOH A 86 588 132 HOH HOH . D 3 HOH A 87 589 133 HOH HOH . D 3 HOH A 88 590 136 HOH HOH . D 3 HOH A 89 591 137 HOH HOH . D 3 HOH A 90 592 138 HOH HOH . D 3 HOH A 91 593 140 HOH HOH . D 3 HOH A 92 594 141 HOH HOH . D 3 HOH A 93 595 142 HOH HOH . D 3 HOH A 94 596 143 HOH HOH . D 3 HOH A 95 597 144 HOH HOH . D 3 HOH A 96 598 145 HOH HOH . D 3 HOH A 97 599 146 HOH HOH . D 3 HOH A 98 600 147 HOH HOH . D 3 HOH A 99 601 149 HOH HOH . D 3 HOH A 100 602 150 HOH HOH . D 3 HOH A 101 603 152 HOH HOH . D 3 HOH A 102 604 154 HOH HOH . D 3 HOH A 103 605 155 HOH HOH . D 3 HOH A 104 606 156 HOH HOH . D 3 HOH A 105 607 157 HOH HOH . D 3 HOH A 106 608 158 HOH HOH . D 3 HOH A 107 609 159 HOH HOH . D 3 HOH A 108 610 160 HOH HOH . D 3 HOH A 109 611 161 HOH HOH . D 3 HOH A 110 612 162 HOH HOH . D 3 HOH A 111 613 163 HOH HOH . D 3 HOH A 112 614 164 HOH HOH . D 3 HOH A 113 615 165 HOH HOH . D 3 HOH A 114 616 166 HOH HOH . D 3 HOH A 115 617 167 HOH HOH . D 3 HOH A 116 618 170 HOH HOH . D 3 HOH A 117 619 171 HOH HOH . D 3 HOH A 118 620 172 HOH HOH . D 3 HOH A 119 621 174 HOH HOH . D 3 HOH A 120 622 175 HOH HOH . D 3 HOH A 121 623 176 HOH HOH . D 3 HOH A 122 624 178 HOH HOH . D 3 HOH A 123 625 179 HOH HOH . D 3 HOH A 124 626 181 HOH HOH . D 3 HOH A 125 627 183 HOH HOH . D 3 HOH A 126 628 184 HOH HOH . D 3 HOH A 127 629 185 HOH HOH . D 3 HOH A 128 630 187 HOH HOH . D 3 HOH A 129 631 188 HOH HOH . D 3 HOH A 130 632 189 HOH HOH . D 3 HOH A 131 633 190 HOH HOH . D 3 HOH A 132 634 192 HOH HOH . D 3 HOH A 133 635 193 HOH HOH . D 3 HOH A 134 636 194 HOH HOH . D 3 HOH A 135 637 195 HOH HOH . D 3 HOH A 136 638 198 HOH HOH . D 3 HOH A 137 639 200 HOH HOH . D 3 HOH A 138 640 201 HOH HOH . D 3 HOH A 139 641 202 HOH HOH . D 3 HOH A 140 642 203 HOH HOH . D 3 HOH A 141 643 204 HOH HOH . D 3 HOH A 142 644 207 HOH HOH . D 3 HOH A 143 645 211 HOH HOH . D 3 HOH A 144 646 214 HOH HOH . D 3 HOH A 145 647 215 HOH HOH . D 3 HOH A 146 648 216 HOH HOH . D 3 HOH A 147 649 218 HOH HOH . D 3 HOH A 148 650 219 HOH HOH . D 3 HOH A 149 651 221 HOH HOH . D 3 HOH A 150 652 222 HOH HOH . D 3 HOH A 151 653 223 HOH HOH . D 3 HOH A 152 654 226 HOH HOH . D 3 HOH A 153 655 227 HOH HOH . D 3 HOH A 154 656 228 HOH HOH . D 3 HOH A 155 657 229 HOH HOH . D 3 HOH A 156 658 230 HOH HOH . D 3 HOH A 157 659 231 HOH HOH . D 3 HOH A 158 660 235 HOH HOH . D 3 HOH A 159 661 236 HOH HOH . D 3 HOH A 160 662 239 HOH HOH . D 3 HOH A 161 663 240 HOH HOH . D 3 HOH A 162 664 241 HOH HOH . D 3 HOH A 163 665 244 HOH HOH . D 3 HOH A 164 666 245 HOH HOH . D 3 HOH A 165 667 246 HOH HOH . D 3 HOH A 166 668 247 HOH HOH . D 3 HOH A 167 669 248 HOH HOH . D 3 HOH A 168 670 250 HOH HOH . D 3 HOH A 169 671 251 HOH HOH . D 3 HOH A 170 672 254 HOH HOH . D 3 HOH A 171 673 255 HOH HOH . D 3 HOH A 172 674 257 HOH HOH . D 3 HOH A 173 675 258 HOH HOH . D 3 HOH A 174 676 261 HOH HOH . D 3 HOH A 175 677 262 HOH HOH . D 3 HOH A 176 678 263 HOH HOH . D 3 HOH A 177 679 264 HOH HOH . D 3 HOH A 178 680 265 HOH HOH . D 3 HOH A 179 681 267 HOH HOH . D 3 HOH A 180 682 268 HOH HOH . D 3 HOH A 181 683 270 HOH HOH . D 3 HOH A 182 684 271 HOH HOH . D 3 HOH A 183 685 273 HOH HOH . D 3 HOH A 184 686 274 HOH HOH . D 3 HOH A 185 687 275 HOH HOH . D 3 HOH A 186 688 276 HOH HOH . D 3 HOH A 187 689 277 HOH HOH . D 3 HOH A 188 690 278 HOH HOH . D 3 HOH A 189 691 279 HOH HOH . D 3 HOH A 190 692 281 HOH HOH . D 3 HOH A 191 693 283 HOH HOH . D 3 HOH A 192 694 284 HOH HOH . D 3 HOH A 193 695 285 HOH HOH . D 3 HOH A 194 696 286 HOH HOH . D 3 HOH A 195 697 287 HOH HOH . D 3 HOH A 196 698 288 HOH HOH . D 3 HOH A 197 699 290 HOH HOH . D 3 HOH A 198 700 292 HOH HOH . D 3 HOH A 199 701 293 HOH HOH . D 3 HOH A 200 702 294 HOH HOH . D 3 HOH A 201 703 296 HOH HOH . D 3 HOH A 202 704 297 HOH HOH . D 3 HOH A 203 705 298 HOH HOH . D 3 HOH A 204 706 299 HOH HOH . D 3 HOH A 205 707 300 HOH HOH . D 3 HOH A 206 708 302 HOH HOH . D 3 HOH A 207 709 303 HOH HOH . D 3 HOH A 208 710 305 HOH HOH . D 3 HOH A 209 711 307 HOH HOH . D 3 HOH A 210 712 308 HOH HOH . D 3 HOH A 211 713 309 HOH HOH . D 3 HOH A 212 714 310 HOH HOH . D 3 HOH A 213 715 311 HOH HOH . D 3 HOH A 214 716 312 HOH HOH . D 3 HOH A 215 717 313 HOH HOH . D 3 HOH A 216 718 315 HOH HOH . D 3 HOH A 217 719 316 HOH HOH . D 3 HOH A 218 720 318 HOH HOH . D 3 HOH A 219 721 319 HOH HOH . D 3 HOH A 220 722 321 HOH HOH . D 3 HOH A 221 723 322 HOH HOH . D 3 HOH A 222 724 323 HOH HOH . D 3 HOH A 223 725 324 HOH HOH . D 3 HOH A 224 726 326 HOH HOH . D 3 HOH A 225 727 327 HOH HOH . D 3 HOH A 226 728 328 HOH HOH . D 3 HOH A 227 729 329 HOH HOH . D 3 HOH A 228 730 330 HOH HOH . D 3 HOH A 229 731 331 HOH HOH . D 3 HOH A 230 732 333 HOH HOH . D 3 HOH A 231 733 334 HOH HOH . D 3 HOH A 232 734 335 HOH HOH . D 3 HOH A 233 735 336 HOH HOH . D 3 HOH A 234 736 337 HOH HOH . D 3 HOH A 235 737 340 HOH HOH . D 3 HOH A 236 738 341 HOH HOH . D 3 HOH A 237 739 343 HOH HOH . D 3 HOH A 238 740 345 HOH HOH . D 3 HOH A 239 741 346 HOH HOH . D 3 HOH A 240 742 347 HOH HOH . D 3 HOH A 241 743 348 HOH HOH . D 3 HOH A 242 744 349 HOH HOH . D 3 HOH A 243 745 351 HOH HOH . D 3 HOH A 244 746 352 HOH HOH . D 3 HOH A 245 747 353 HOH HOH . D 3 HOH A 246 748 354 HOH HOH . D 3 HOH A 247 749 355 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 14.092 _atom_site.Cartn_y 2.402 _atom_site.Cartn_z 16.862 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 24.3 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #