data_2GVZ # _model_server_result.job_id Wn7Ub5JlWouNjYB-QtT1RQ _model_server_result.datetime_utc '2024-10-27 00:39:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2gvz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1}' # _entry.id 2GVZ # _exptl.entry_id 2GVZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 550.727 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description METHYLPIPERAZINOFORSKOLIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2GVZ _cell.length_a 116.8 _cell.length_b 132.1 _cell.length_c 69.6 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2GVZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 G O2A ONA . A ONA 100 1_555 D MN MN . A MN 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc2 G O1B ONA . A ONA 100 1_555 E MN MN . A MN 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc3 A OD2 ASP 41 A ASP 396 1_555 E MN MN . A MN 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc4 A O ILE 42 A ILE 397 1_555 E MN MN . A MN 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc5 A OD2 ASP 85 A ASP 440 1_555 E MN MN . A MN 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc6 C OG SER 54 C SER 54 1_555 H MN MN . C MN 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc7 C OG1 THR 204 C THR 204 1_555 H MN MN . C MN 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc8 J O3G GSP . C GSP 395 1_555 H MN MN . C MN 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc9 J O2G GSP . C GSP 395 1_555 H MN MN . C MN 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc10 J O2B GSP . C GSP 395 1_555 H MN MN . C MN 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? # _chem_comp.formula 'C30 H50 N2 O7' _chem_comp.formula_weight 550.727 _chem_comp.id FKP _chem_comp.mon_nstd_flag . _chem_comp.name METHYLPIPERAZINOFORSKOLIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O2 FKP sing 83 n n C1 C2 FKP sing 84 n n C1 C10 FKP sing 85 n n C1 H1 FKP sing 86 n n O2 HO2 FKP sing 87 n n C2 C3 FKP sing 88 n n C2 H21 FKP sing 89 n n C2 H22 FKP sing 90 n n C3 C4 FKP sing 91 n n C3 H31 FKP sing 92 n n C3 H32 FKP sing 93 n n C4 C5 FKP sing 94 n n C4 C18 FKP sing 95 n n C4 C19 FKP sing 96 n n C5 C6 FKP sing 97 n n C5 C10 FKP sing 98 n n C5 H5 FKP sing 99 n n C6 O3 FKP sing 100 n n C6 C7 FKP sing 101 n n C6 H6 FKP sing 102 n n O3 HO3 FKP sing 103 n n C7 O4 FKP sing 104 n n C7 C8 FKP sing 105 n n C7 H7 FKP sing 106 n n O4 C21 FKP sing 107 n n C8 O1 FKP sing 108 n n C8 C9 FKP sing 109 n n C8 C17 FKP sing 110 n n O1 C13 FKP sing 111 n n C9 O6 FKP sing 112 n n C9 C10 FKP sing 113 n n C9 C11 FKP sing 114 n n O6 HO6 FKP sing 115 n n C10 C20 FKP sing 116 n n C11 O7 FKP doub 117 n n C11 C12 FKP sing 118 n n C12 C13 FKP sing 119 n n C12 H121 FKP sing 120 n n C12 H122 FKP sing 121 n n C13 C14 FKP sing 122 n n C13 C16 FKP sing 123 n n C14 C15 FKP doub 124 n n C14 H14 FKP sing 125 n n C15 H151 FKP sing 126 n n C15 H152 FKP sing 127 n n C16 H161 FKP sing 128 n n C16 H162 FKP sing 129 n n C16 H163 FKP sing 130 n n C17 H171 FKP sing 131 n n C17 H172 FKP sing 132 n n C17 H173 FKP sing 133 n n C18 H181 FKP sing 134 n n C18 H182 FKP sing 135 n n C18 H183 FKP sing 136 n n C19 H191 FKP sing 137 n n C19 H192 FKP sing 138 n n C19 H193 FKP sing 139 n n C20 H201 FKP sing 140 n n C20 H202 FKP sing 141 n n C20 H203 FKP sing 142 n n C21 O5 FKP doub 143 n n C21 C22 FKP sing 144 n n C22 C23 FKP sing 145 n n C22 H221 FKP sing 146 n n C22 H222 FKP sing 147 n n C23 C24 FKP sing 148 n n C23 H231 FKP sing 149 n n C23 H232 FKP sing 150 n n C24 C25 FKP sing 151 n n C24 H241 FKP sing 152 n n C24 H242 FKP sing 153 n n C25 N1 FKP sing 154 n n C25 H251 FKP sing 155 n n C25 H252 FKP sing 156 n n N1 C26 FKP sing 157 n n N1 C29 FKP sing 158 n n C26 C27 FKP sing 159 n n C26 H261 FKP sing 160 n n C26 H262 FKP sing 161 n n C27 N2 FKP sing 162 n n C27 H271 FKP sing 163 n n C27 H272 FKP sing 164 n n N2 C28 FKP sing 165 n n N2 C30 FKP sing 166 n n C28 C29 FKP sing 167 n n C28 H281 FKP sing 168 n n C28 H282 FKP sing 169 n n C29 H291 FKP sing 170 n n C29 H292 FKP sing 171 n n C30 H301 FKP sing 172 n n C30 H302 FKP sing 173 n n C30 H303 FKP sing 174 n n # _atom_sites.entry_id 2GVZ _atom_sites.fract_transf_matrix[1][1] 0.008562 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00757 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014368 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MN A 1 581 502 MN MN . E 4 MN A 1 582 503 MN MN . F 5 FKP A 1 1 1 FKP FKP . G 6 ONA A 1 100 100 ONA ONA . H 4 MN C 1 396 396 MN MN . I 7 CL C 1 397 397 CL CL . J 8 GSP C 1 395 395 GSP GSP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FKP . . . F 5 42.38 -12.089 51.869 1 26.33 ? C1 FKP 1 A 1 HETATM 2 O O2 FKP . . . F 5 42.265 -13.421 51.443 1 33.66 ? O2 FKP 1 A 1 HETATM 3 C C2 FKP . . . F 5 43.45 -12.055 53.094 1 25.47 ? C2 FKP 1 A 1 HETATM 4 C C3 FKP . . . F 5 44.636 -13.02 52.624 1 20.74 ? C3 FKP 1 A 1 HETATM 5 C C4 FKP . . . F 5 45.366 -12.281 51.441 1 19.65 ? C4 FKP 1 A 1 HETATM 6 C C5 FKP . . . F 5 44.367 -11.919 50.257 1 20.94 ? C5 FKP 1 A 1 HETATM 7 C C6 FKP . . . F 5 45.086 -10.908 49.191 1 20.32 ? C6 FKP 1 A 1 HETATM 8 O O3 FKP . . . F 5 45.438 -9.672 49.8 1 14.97 ? O3 FKP 1 A 1 HETATM 9 C C7 FKP . . . F 5 44.17 -10.609 47.955 1 21.86 ? C7 FKP 1 A 1 HETATM 10 O O4 FKP . . . F 5 44.744 -9.571 47.035 1 33.3 ? O4 FKP 1 A 1 HETATM 11 C C8 FKP . . . F 5 42.725 -10.136 48.209 1 19.92 ? C8 FKP 1 A 1 HETATM 12 O O1 FKP . . . F 5 42.02 -10.088 46.945 1 19.24 ? O1 FKP 1 A 1 HETATM 13 C C9 FKP . . . F 5 42.065 -11.108 49.256 1 19.13 ? C9 FKP 1 A 1 HETATM 14 O O6 FKP . . . F 5 42.024 -12.384 48.667 1 14.02 ? O6 FKP 1 A 1 HETATM 15 C C10 FKP . . . F 5 42.943 -11.183 50.724 1 23.71 ? C10 FKP 1 A 1 HETATM 16 C C11 FKP . . . F 5 40.585 -10.593 49.403 1 16.85 ? C11 FKP 1 A 1 HETATM 17 O O7 FKP . . . F 5 39.989 -10.737 50.429 1 13.94 ? O7 FKP 1 A 1 HETATM 18 C C12 FKP . . . F 5 39.832 -9.914 48.195 1 19.1 ? C12 FKP 1 A 1 HETATM 19 C C13 FKP . . . F 5 40.606 -9.755 46.833 1 19.05 ? C13 FKP 1 A 1 HETATM 20 C C14 FKP . . . F 5 39.995 -10.677 45.811 1 16.15 ? C14 FKP 1 A 1 HETATM 21 C C15 FKP . . . F 5 40.386 -11.932 45.658 1 17.52 ? C15 FKP 1 A 1 HETATM 22 C C16 FKP . . . F 5 40.36 -8.353 46.279 1 23.28 ? C16 FKP 1 A 1 HETATM 23 C C17 FKP . . . F 5 42.891 -8.612 48.604 1 26.21 ? C17 FKP 1 A 1 HETATM 24 C C18 FKP . . . F 5 46.416 -13.252 50.951 1 15.91 ? C18 FKP 1 A 1 HETATM 25 C C19 FKP . . . F 5 46.411 -11.349 51.986 1 20.87 ? C19 FKP 1 A 1 HETATM 26 C C20 FKP . . . F 5 43.017 -9.761 51.427 1 26.11 ? C20 FKP 1 A 1 HETATM 27 C C21 FKP . . . F 5 46.032 -9.534 46.585 1 46.64 ? C21 FKP 1 A 1 HETATM 28 O O5 FKP . . . F 5 46.494 -10.434 45.961 1 45.76 ? O5 FKP 1 A 1 HETATM 29 C C22 FKP . . . F 5 46.841 -8.198 46.898 1 57.62 ? C22 FKP 1 A 1 HETATM 30 C C23 FKP . . . F 5 47.513 -7.897 48.342 1 69.48 ? C23 FKP 1 A 1 HETATM 31 C C24 FKP . . . F 5 48.615 -8.949 48.822 1 77.68 ? C24 FKP 1 A 1 HETATM 32 C C25 FKP . . . F 5 49.749 -8.405 49.799 1 83.67 ? C25 FKP 1 A 1 HETATM 33 N N1 FKP . . . F 5 49.672 -8.95 51.225 1 87.52 ? N1 FKP 1 A 1 HETATM 34 C C26 FKP . . . F 5 50.084 -7.847 52.199 1 89.12 ? C26 FKP 1 A 1 HETATM 35 C C27 FKP . . . F 5 50.028 -8.344 53.688 1 88.29 ? C27 FKP 1 A 1 HETATM 36 N N2 FKP . . . F 5 50.868 -9.573 53.9 1 86 ? N2 FKP 1 A 1 HETATM 37 C C28 FKP . . . F 5 50.452 -10.659 52.952 1 83.98 ? C28 FKP 1 A 1 HETATM 38 C C29 FKP . . . F 5 50.562 -10.176 51.446 1 85.45 ? C29 FKP 1 A 1 HETATM 39 C C30 FKP . . . F 5 50.75 -9.968 55.318 1 84.09 ? C30 FKP 1 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 39 #