data_2GWL # _model_server_result.job_id VyMxMj0i1hBAWJzt5RKPGA _model_server_result.datetime_utc '2024-11-15 22:22:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2gwl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":592}' # _entry.id 2GWL # _exptl.entry_id 2GWL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 665.441 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2GWL _cell.length_a 55.585 _cell.length_b 55.585 _cell.length_c 143.577 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2GWL _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 164 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 555 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 164 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 555 _struct_conn.ptnr2_symmetry 4_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.184 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H29 N7 O14 P2' _chem_comp.formula_weight 665.441 _chem_comp.id NAI _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NADH # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAI doub 237 n n PA O2A NAI sing 238 n n PA O5B NAI sing 239 n n PA O3 NAI sing 240 n n O2A HOA2 NAI sing 241 n n O5B C5B NAI sing 242 n n C5B C4B NAI sing 243 n n C5B H51A NAI sing 244 n n C5B H52A NAI sing 245 n n C4B O4B NAI sing 246 n n C4B C3B NAI sing 247 n n C4B H4B NAI sing 248 n n O4B C1B NAI sing 249 n n C3B O3B NAI sing 250 n n C3B C2B NAI sing 251 n n C3B H3B NAI sing 252 n n O3B HO3A NAI sing 253 n n C2B O2B NAI sing 254 n n C2B C1B NAI sing 255 n n C2B H2B NAI sing 256 n n O2B HO2A NAI sing 257 n n C1B N9A NAI sing 258 n n C1B H1B NAI sing 259 n n N9A C8A NAI sing 260 n y N9A C4A NAI sing 261 n y C8A N7A NAI doub 262 n y C8A H8A NAI sing 263 n n N7A C5A NAI sing 264 n y C5A C6A NAI sing 265 n y C5A C4A NAI doub 266 n y C6A N6A NAI sing 267 n n C6A N1A NAI doub 268 n y N6A H61A NAI sing 269 n n N6A H62A NAI sing 270 n n N1A C2A NAI sing 271 n y C2A N3A NAI doub 272 n y C2A H2A NAI sing 273 n n N3A C4A NAI sing 274 n y O3 PN NAI sing 275 n n PN O1N NAI sing 276 n n PN O2N NAI doub 277 n n PN O5D NAI sing 278 n n O1N HO1N NAI sing 279 n n O5D C5D NAI sing 280 n n C5D C4D NAI sing 281 n n C5D H51N NAI sing 282 n n C5D H52N NAI sing 283 n n C4D O4D NAI sing 284 n n C4D C3D NAI sing 285 n n C4D H4D NAI sing 286 n n O4D C1D NAI sing 287 n n C3D O3D NAI sing 288 n n C3D C2D NAI sing 289 n n C3D H3D NAI sing 290 n n O3D HO3N NAI sing 291 n n C2D O2D NAI sing 292 n n C2D C1D NAI sing 293 n n C2D H2D NAI sing 294 n n O2D HO2N NAI sing 295 n n C1D N1N NAI sing 296 n n C1D H1D NAI sing 297 n n N1N C2N NAI sing 298 n n N1N C6N NAI sing 299 n n C2N C3N NAI doub 300 n n C2N H2N NAI sing 301 n n C3N C7N NAI sing 302 n n C3N C4N NAI sing 303 n n C7N O7N NAI doub 304 n n C7N N7N NAI sing 305 n n N7N H71N NAI sing 306 n n N7N H72N NAI sing 307 n n C4N C5N NAI sing 308 n n C4N H4N NAI sing 309 n n C4N H42N NAI sing 310 n n C5N C6N NAI doub 311 n n C5N H5N NAI sing 312 n n C6N H6N NAI sing 313 n n # _atom_sites.entry_id 2GWL _atom_sites.fract_transf_matrix[1][1] 0.01799 _atom_sites.fract_transf_matrix[1][2] 0.01039 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02077 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00697 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAI A 1 592 500 NAI NAD . C 3 HOH A 1 1 1 HOH HOH . C 3 HOH A 2 2 2 HOH HOH . C 3 HOH A 3 3 3 HOH HOH . C 3 HOH A 4 4 4 HOH HOH . C 3 HOH A 5 5 5 HOH HOH . C 3 HOH A 6 6 6 HOH HOH . C 3 HOH A 7 7 7 HOH HOH . C 3 HOH A 8 8 8 HOH HOH . C 3 HOH A 9 9 9 HOH HOH . C 3 HOH A 10 10 10 HOH HOH . C 3 HOH A 11 11 11 HOH HOH . C 3 HOH A 12 12 12 HOH HOH . C 3 HOH A 13 13 13 HOH HOH . C 3 HOH A 14 14 14 HOH HOH . C 3 HOH A 15 15 15 HOH HOH . C 3 HOH A 16 16 16 HOH HOH . C 3 HOH A 17 17 17 HOH HOH . C 3 HOH A 18 18 18 HOH HOH . C 3 HOH A 19 19 19 HOH HOH . C 3 HOH A 20 20 20 HOH HOH . C 3 HOH A 21 21 21 HOH HOH . C 3 HOH A 22 22 22 HOH HOH . C 3 HOH A 23 23 23 HOH HOH . C 3 HOH A 24 24 24 HOH HOH . C 3 HOH A 25 25 25 HOH HOH . C 3 HOH A 26 26 26 HOH HOH . C 3 HOH A 27 27 27 HOH HOH . C 3 HOH A 28 28 28 HOH HOH . C 3 HOH A 29 29 29 HOH HOH . C 3 HOH A 30 30 30 HOH HOH . C 3 HOH A 31 31 31 HOH HOH . C 3 HOH A 32 32 32 HOH HOH . C 3 HOH A 33 33 33 HOH HOH . C 3 HOH A 34 34 34 HOH HOH . C 3 HOH A 35 35 35 HOH HOH . C 3 HOH A 36 36 36 HOH HOH . C 3 HOH A 37 37 37 HOH HOH . C 3 HOH A 38 38 38 HOH HOH . C 3 HOH A 39 39 39 HOH HOH . C 3 HOH A 40 40 40 HOH HOH . C 3 HOH A 41 41 41 HOH HOH . C 3 HOH A 42 42 42 HOH HOH . C 3 HOH A 43 43 43 HOH HOH . C 3 HOH A 44 44 44 HOH HOH . C 3 HOH A 45 45 45 HOH HOH . C 3 HOH A 46 46 46 HOH HOH . C 3 HOH A 47 47 47 HOH HOH . C 3 HOH A 48 48 48 HOH HOH . C 3 HOH A 49 49 49 HOH HOH . C 3 HOH A 50 50 50 HOH HOH . C 3 HOH A 51 51 51 HOH HOH . C 3 HOH A 52 52 52 HOH HOH . C 3 HOH A 53 53 53 HOH HOH . C 3 HOH A 54 54 54 HOH HOH . C 3 HOH A 55 55 55 HOH HOH . C 3 HOH A 56 56 56 HOH HOH . C 3 HOH A 57 57 57 HOH HOH . C 3 HOH A 58 58 58 HOH HOH . C 3 HOH A 59 59 59 HOH HOH . C 3 HOH A 60 60 60 HOH HOH . C 3 HOH A 61 61 61 HOH HOH . C 3 HOH A 62 62 62 HOH HOH . C 3 HOH A 63 63 63 HOH HOH . C 3 HOH A 64 64 64 HOH HOH . C 3 HOH A 65 65 65 HOH HOH . C 3 HOH A 66 66 66 HOH HOH . C 3 HOH A 67 67 67 HOH HOH . C 3 HOH A 68 68 68 HOH HOH . C 3 HOH A 69 69 69 HOH HOH . C 3 HOH A 70 70 70 HOH HOH . C 3 HOH A 71 71 71 HOH HOH . C 3 HOH A 72 72 72 HOH HOH . C 3 HOH A 73 73 73 HOH HOH . C 3 HOH A 74 74 74 HOH HOH . C 3 HOH A 75 75 75 HOH HOH . C 3 HOH A 76 76 76 HOH HOH . C 3 HOH A 77 77 77 HOH HOH . C 3 HOH A 78 78 78 HOH HOH . C 3 HOH A 79 79 79 HOH HOH . C 3 HOH A 80 80 80 HOH HOH . C 3 HOH A 81 81 81 HOH HOH . C 3 HOH A 82 82 82 HOH HOH . C 3 HOH A 83 83 83 HOH HOH . C 3 HOH A 84 84 84 HOH HOH . C 3 HOH A 85 85 85 HOH HOH . C 3 HOH A 86 86 86 HOH HOH . C 3 HOH A 87 87 87 HOH HOH . C 3 HOH A 88 88 88 HOH HOH . C 3 HOH A 89 89 89 HOH HOH . C 3 HOH A 90 90 90 HOH HOH . C 3 HOH A 91 91 91 HOH HOH . C 3 HOH A 92 92 92 HOH HOH . C 3 HOH A 93 93 93 HOH HOH . C 3 HOH A 94 94 94 HOH HOH . C 3 HOH A 95 95 95 HOH HOH . C 3 HOH A 96 96 96 HOH HOH . C 3 HOH A 97 97 97 HOH HOH . C 3 HOH A 98 98 98 HOH HOH . C 3 HOH A 99 99 99 HOH HOH . C 3 HOH A 100 100 100 HOH HOH . C 3 HOH A 101 101 101 HOH HOH . C 3 HOH A 102 102 102 HOH HOH . C 3 HOH A 103 103 103 HOH HOH . C 3 HOH A 104 104 104 HOH HOH . C 3 HOH A 105 105 105 HOH HOH . C 3 HOH A 106 106 106 HOH HOH . C 3 HOH A 107 107 107 HOH HOH . C 3 HOH A 108 108 108 HOH HOH . C 3 HOH A 109 109 109 HOH HOH . C 3 HOH A 110 110 110 HOH HOH . C 3 HOH A 111 111 111 HOH HOH . C 3 HOH A 112 112 112 HOH HOH . C 3 HOH A 113 113 113 HOH HOH . C 3 HOH A 114 114 114 HOH HOH . C 3 HOH A 115 115 115 HOH HOH . C 3 HOH A 116 116 116 HOH HOH . C 3 HOH A 117 117 117 HOH HOH . C 3 HOH A 118 118 118 HOH HOH . C 3 HOH A 119 119 119 HOH HOH . C 3 HOH A 120 120 120 HOH HOH . C 3 HOH A 121 121 121 HOH HOH . C 3 HOH A 122 122 122 HOH HOH . C 3 HOH A 123 123 123 HOH HOH . C 3 HOH A 124 124 124 HOH HOH . C 3 HOH A 125 125 125 HOH HOH . C 3 HOH A 126 126 126 HOH HOH . C 3 HOH A 127 127 127 HOH HOH . C 3 HOH A 128 128 128 HOH HOH . C 3 HOH A 129 129 129 HOH HOH . C 3 HOH A 130 130 130 HOH HOH . C 3 HOH A 131 131 131 HOH HOH . C 3 HOH A 132 132 132 HOH HOH . C 3 HOH A 133 133 133 HOH HOH . C 3 HOH A 134 134 134 HOH HOH . C 3 HOH A 135 135 135 HOH HOH . C 3 HOH A 136 136 136 HOH HOH . C 3 HOH A 137 137 137 HOH HOH . C 3 HOH A 138 138 138 HOH HOH . C 3 HOH A 139 139 139 HOH HOH . C 3 HOH A 140 140 140 HOH HOH . C 3 HOH A 141 141 141 HOH HOH . C 3 HOH A 142 142 142 HOH HOH . C 3 HOH A 143 143 143 HOH HOH . C 3 HOH A 144 144 144 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAI . . . B 2 20.674 25.91 22.958 1 51.45 ? PA NAI 592 A 1 HETATM 2 O O1A NAI . . . B 2 21.922 25.134 22.826 1 50.38 ? O1A NAI 592 A 1 HETATM 3 O O2A NAI . . . B 2 20.583 26.649 24.246 1 52.85 ? O2A NAI 592 A 1 HETATM 4 O O5B NAI . . . B 2 20.389 26.731 21.59 1 54.05 ? O5B NAI 592 A 1 HETATM 5 C C5B NAI . . . B 2 20.321 28.104 21.685 1 53.07 ? C5B NAI 592 A 1 HETATM 6 C C4B NAI . . . B 2 19.429 28.758 20.653 1 49.55 ? C4B NAI 592 A 1 HETATM 7 O O4B NAI . . . B 2 19.7 30.032 21.165 1 48.17 ? O4B NAI 592 A 1 HETATM 8 C C3B NAI . . . B 2 19.794 28.777 19.147 1 48.04 ? C3B NAI 592 A 1 HETATM 9 O O3B NAI . . . B 2 18.841 28.172 18.262 1 46.74 ? O3B NAI 592 A 1 HETATM 10 C C2B NAI . . . B 2 19.953 30.269 18.854 1 46.25 ? C2B NAI 592 A 1 HETATM 11 O O2B NAI . . . B 2 18.777 30.811 18.266 1 44.72 ? O2B NAI 592 A 1 HETATM 12 C C1B NAI . . . B 2 20.14 30.951 20.215 1 46.17 ? C1B NAI 592 A 1 HETATM 13 N N9A NAI . . . B 2 21.518 31.37 20.498 1 43.03 ? N9A NAI 592 A 1 HETATM 14 C C8A NAI . . . B 2 21.819 32.523 21.179 1 44.06 ? C8A NAI 592 A 1 HETATM 15 N N7A NAI . . . B 2 23.158 32.669 21.23 1 42.89 ? N7A NAI 592 A 1 HETATM 16 C C5A NAI . . . B 2 23.685 31.592 20.598 1 44.14 ? C5A NAI 592 A 1 HETATM 17 C C6A NAI . . . B 2 24.99 31.273 20.395 1 43.74 ? C6A NAI 592 A 1 HETATM 18 N N6A NAI . . . B 2 25.89 32.207 20.75 1 44.81 ? N6A NAI 592 A 1 HETATM 19 N N1A NAI . . . B 2 25.28 30.114 19.724 1 44.2 ? N1A NAI 592 A 1 HETATM 20 C C2A NAI . . . B 2 24.294 29.28 19.241 1 43.01 ? C2A NAI 592 A 1 HETATM 21 N N3A NAI . . . B 2 22.979 29.606 19.448 1 43.83 ? N3A NAI 592 A 1 HETATM 22 C C4A NAI . . . B 2 22.682 30.762 20.112 1 44.06 ? C4A NAI 592 A 1 HETATM 23 O O3 NAI . . . B 2 19.436 24.875 22.863 1 53.95 ? O3 NAI 592 A 1 HETATM 24 P PN NAI . . . B 2 19.4 23.537 21.97 1 54.51 ? PN NAI 592 A 1 HETATM 25 O O1N NAI . . . B 2 20.736 22.984 21.571 1 58.21 ? O1N NAI 592 A 1 HETATM 26 O O2N NAI . . . B 2 18.407 23.862 20.926 1 58.34 ? O2N NAI 592 A 1 HETATM 27 O O5D NAI . . . B 2 18.8 22.407 22.945 1 52.08 ? O5D NAI 592 A 1 HETATM 28 C C5D NAI . . . B 2 17.422 22.389 23.253 1 53.56 ? C5D NAI 592 A 1 HETATM 29 C C4D NAI . . . B 2 16.989 20.926 23.363 1 52.24 ? C4D NAI 592 A 1 HETATM 30 O O4D NAI . . . B 2 17.253 20.243 22.149 1 50.58 ? O4D NAI 592 A 1 HETATM 31 C C3D NAI . . . B 2 17.749 20.198 24.467 1 51.61 ? C3D NAI 592 A 1 HETATM 32 O O3D NAI . . . B 2 16.808 19.539 25.287 1 49.96 ? O3D NAI 592 A 1 HETATM 33 C C2D NAI . . . B 2 18.607 19.205 23.724 1 48.01 ? C2D NAI 592 A 1 HETATM 34 O O2D NAI . . . B 2 18.581 18.037 24.492 1 46.95 ? O2D NAI 592 A 1 HETATM 35 C C1D NAI . . . B 2 17.899 19.022 22.373 1 47.4 ? C1D NAI 592 A 1 HETATM 36 N N1N NAI . . . B 2 18.795 18.775 21.218 1 48.84 ? N1N NAI 592 A 1 HETATM 37 C C2N NAI . . . B 2 19.201 19.85 20.464 1 45.69 ? C2N NAI 592 A 1 HETATM 38 C C3N NAI . . . B 2 20.06 19.66 19.386 1 48.25 ? C3N NAI 592 A 1 HETATM 39 C C7N NAI . . . B 2 20.141 20.73 18.294 1 48.85 ? C7N NAI 592 A 1 HETATM 40 O O7N NAI . . . B 2 20.345 20.281 16.994 1 45.62 ? O7N NAI 592 A 1 HETATM 41 N N7N NAI . . . B 2 19.993 22.055 18.512 1 49.44 ? N7N NAI 592 A 1 HETATM 42 C C4N NAI . . . B 2 20.486 18.348 19.109 1 44.52 ? C4N NAI 592 A 1 HETATM 43 C C5N NAI . . . B 2 20.075 17.267 19.887 1 46.29 ? C5N NAI 592 A 1 HETATM 44 C C6N NAI . . . B 2 19.21 17.484 20.94 1 45.94 ? C6N NAI 592 A 1 # _model_server_stats.io_time_ms 84 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 44 #