data_2GX6
#
_model_server_result.job_id            ufMkO6KI2b8cOG_axrFT3Q 
_model_server_result.datetime_utc      '2024-10-19 17:25:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2gx6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    2GX6 
#
_exptl.entry_id    2GX6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              150.13 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            beta-D-ribopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2GX6 
_cell.length_a            34.847 
_cell.length_b            71.05 
_cell.length_c            98.949 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2GX6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C5 H10 O5' 
_chem_comp.formula_weight    150.13 
_chem_comp.id                RIP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              beta-D-ribopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     'beta-D-ribose;D-ribose;ribose;RIBOSE(PYRANOSE FORM)' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RIP sing 264 n n 
C1 O1 RIP sing 265 n n 
C1 O5 RIP sing 266 n n 
C1 H1 RIP sing 267 n n 
C2 C3 RIP sing 268 n n 
C2 O2 RIP sing 269 n n 
C2 H2 RIP sing 270 n n 
C3 C4 RIP sing 271 n n 
C3 O3 RIP sing 272 n n 
C3 H3 RIP sing 273 n n 
C4 C5 RIP sing 274 n n 
C4 O4 RIP sing 275 n n 
C4 H4 RIP sing 276 n n 
C5 O5 RIP sing 277 n n 
C5 H51 RIP sing 278 n n 
C5 H52 RIP sing 279 n n 
O1 HO1 RIP sing 280 n n 
O2 HO2 RIP sing 281 n n 
O3 HO3 RIP sing 282 n n 
O4 HO4 RIP sing 283 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
RIP DRibpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
RIP b-D-ribopyranose 'COMMON NAME' GMML 1 
RIP b-D-Ribp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
RIP Rib 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     2GX6 
_atom_sites.fract_transf_matrix[1][1]    0.0287 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01407 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01011 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 RIP A 1 301 301 RIP RIP . 
C 3 HOH A 1 302 1 HOH HOH . 
C 3 HOH A 2 303 2 HOH HOH . 
C 3 HOH A 3 304 3 HOH HOH . 
C 3 HOH A 4 305 4 HOH HOH . 
C 3 HOH A 5 306 5 HOH HOH . 
C 3 HOH A 6 307 6 HOH HOH . 
C 3 HOH A 7 308 7 HOH HOH . 
C 3 HOH A 8 309 8 HOH HOH . 
C 3 HOH A 9 310 9 HOH HOH . 
C 3 HOH A 10 311 10 HOH HOH . 
C 3 HOH A 11 312 11 HOH HOH . 
C 3 HOH A 12 313 12 HOH HOH . 
C 3 HOH A 13 314 13 HOH HOH . 
C 3 HOH A 14 315 14 HOH HOH . 
C 3 HOH A 15 316 15 HOH HOH . 
C 3 HOH A 16 317 16 HOH HOH . 
C 3 HOH A 17 318 17 HOH HOH . 
C 3 HOH A 18 319 18 HOH HOH . 
C 3 HOH A 19 320 19 HOH HOH . 
C 3 HOH A 20 321 20 HOH HOH . 
C 3 HOH A 21 322 21 HOH HOH . 
C 3 HOH A 22 323 22 HOH HOH . 
C 3 HOH A 23 324 23 HOH HOH . 
C 3 HOH A 24 325 24 HOH HOH . 
C 3 HOH A 25 326 25 HOH HOH . 
C 3 HOH A 26 327 26 HOH HOH . 
C 3 HOH A 27 328 27 HOH HOH . 
C 3 HOH A 28 329 28 HOH HOH . 
C 3 HOH A 29 330 29 HOH HOH . 
C 3 HOH A 30 331 30 HOH HOH . 
C 3 HOH A 31 332 31 HOH HOH . 
C 3 HOH A 32 333 32 HOH HOH . 
C 3 HOH A 33 334 33 HOH HOH . 
C 3 HOH A 34 335 34 HOH HOH . 
C 3 HOH A 35 336 35 HOH HOH . 
C 3 HOH A 36 337 36 HOH HOH . 
C 3 HOH A 37 338 37 HOH HOH . 
C 3 HOH A 38 339 38 HOH HOH . 
C 3 HOH A 39 340 39 HOH HOH . 
C 3 HOH A 40 341 40 HOH HOH . 
C 3 HOH A 41 342 41 HOH HOH . 
C 3 HOH A 42 343 42 HOH HOH . 
C 3 HOH A 43 344 43 HOH HOH . 
C 3 HOH A 44 345 44 HOH HOH . 
C 3 HOH A 45 346 45 HOH HOH . 
C 3 HOH A 46 347 46 HOH HOH . 
C 3 HOH A 47 348 47 HOH HOH . 
C 3 HOH A 48 349 48 HOH HOH . 
C 3 HOH A 49 350 49 HOH HOH . 
C 3 HOH A 50 351 50 HOH HOH . 
C 3 HOH A 51 352 51 HOH HOH . 
C 3 HOH A 52 353 52 HOH HOH . 
C 3 HOH A 53 354 53 HOH HOH . 
C 3 HOH A 54 355 54 HOH HOH . 
C 3 HOH A 55 356 55 HOH HOH . 
C 3 HOH A 56 357 56 HOH HOH . 
C 3 HOH A 57 358 57 HOH HOH . 
C 3 HOH A 58 359 58 HOH HOH . 
C 3 HOH A 59 360 59 HOH HOH . 
C 3 HOH A 60 361 60 HOH HOH . 
C 3 HOH A 61 362 61 HOH HOH . 
C 3 HOH A 62 363 62 HOH HOH . 
C 3 HOH A 63 364 63 HOH HOH . 
C 3 HOH A 64 365 64 HOH HOH . 
C 3 HOH A 65 366 65 HOH HOH . 
C 3 HOH A 66 367 66 HOH HOH . 
C 3 HOH A 67 368 67 HOH HOH . 
C 3 HOH A 68 369 68 HOH HOH . 
C 3 HOH A 69 370 69 HOH HOH . 
C 3 HOH A 70 371 70 HOH HOH . 
C 3 HOH A 71 372 71 HOH HOH . 
C 3 HOH A 72 373 72 HOH HOH . 
C 3 HOH A 73 374 73 HOH HOH . 
C 3 HOH A 74 375 74 HOH HOH . 
C 3 HOH A 75 376 75 HOH HOH . 
C 3 HOH A 76 377 76 HOH HOH . 
C 3 HOH A 77 378 77 HOH HOH . 
C 3 HOH A 78 379 78 HOH HOH . 
C 3 HOH A 79 380 79 HOH HOH . 
C 3 HOH A 80 381 80 HOH HOH . 
C 3 HOH A 81 382 81 HOH HOH . 
C 3 HOH A 82 383 82 HOH HOH . 
C 3 HOH A 83 384 83 HOH HOH . 
C 3 HOH A 84 385 84 HOH HOH . 
C 3 HOH A 85 386 85 HOH HOH . 
C 3 HOH A 86 387 86 HOH HOH . 
C 3 HOH A 87 388 87 HOH HOH . 
C 3 HOH A 88 389 88 HOH HOH . 
C 3 HOH A 89 390 89 HOH HOH . 
C 3 HOH A 90 391 90 HOH HOH . 
C 3 HOH A 91 392 91 HOH HOH . 
C 3 HOH A 92 393 92 HOH HOH . 
C 3 HOH A 93 394 93 HOH HOH . 
C 3 HOH A 94 395 94 HOH HOH . 
C 3 HOH A 95 396 95 HOH HOH . 
C 3 HOH A 96 397 96 HOH HOH . 
C 3 HOH A 97 398 97 HOH HOH . 
C 3 HOH A 98 399 98 HOH HOH . 
C 3 HOH A 99 400 99 HOH HOH . 
C 3 HOH A 100 401 100 HOH HOH . 
C 3 HOH A 101 402 101 HOH HOH . 
C 3 HOH A 102 403 102 HOH HOH . 
C 3 HOH A 103 404 103 HOH HOH . 
C 3 HOH A 104 405 104 HOH HOH . 
C 3 HOH A 105 406 105 HOH HOH . 
C 3 HOH A 106 407 106 HOH HOH . 
C 3 HOH A 107 408 107 HOH HOH . 
C 3 HOH A 108 409 108 HOH HOH . 
C 3 HOH A 109 410 109 HOH HOH . 
C 3 HOH A 110 411 110 HOH HOH . 
C 3 HOH A 111 412 111 HOH HOH . 
C 3 HOH A 112 413 112 HOH HOH . 
C 3 HOH A 113 414 113 HOH HOH . 
C 3 HOH A 114 415 114 HOH HOH . 
C 3 HOH A 115 416 115 HOH HOH . 
C 3 HOH A 116 417 116 HOH HOH . 
C 3 HOH A 117 418 117 HOH HOH . 
C 3 HOH A 118 419 118 HOH HOH . 
C 3 HOH A 119 420 119 HOH HOH . 
C 3 HOH A 120 421 120 HOH HOH . 
C 3 HOH A 121 422 122 HOH HOH . 
C 3 HOH A 122 423 123 HOH HOH . 
C 3 HOH A 123 424 124 HOH HOH . 
C 3 HOH A 124 425 125 HOH HOH . 
C 3 HOH A 125 426 126 HOH HOH . 
C 3 HOH A 126 427 127 HOH HOH . 
C 3 HOH A 127 428 128 HOH HOH . 
C 3 HOH A 128 429 129 HOH HOH . 
C 3 HOH A 129 430 130 HOH HOH . 
C 3 HOH A 130 431 131 HOH HOH . 
C 3 HOH A 131 432 133 HOH HOH . 
C 3 HOH A 132 433 134 HOH HOH . 
C 3 HOH A 133 434 135 HOH HOH . 
C 3 HOH A 134 435 136 HOH HOH . 
C 3 HOH A 135 436 137 HOH HOH . 
C 3 HOH A 136 437 138 HOH HOH . 
C 3 HOH A 137 438 140 HOH HOH . 
C 3 HOH A 138 439 141 HOH HOH . 
C 3 HOH A 139 440 142 HOH HOH . 
C 3 HOH A 140 441 143 HOH HOH . 
C 3 HOH A 141 442 144 HOH HOH . 
C 3 HOH A 142 443 145 HOH HOH . 
C 3 HOH A 143 444 146 HOH HOH . 
C 3 HOH A 144 445 147 HOH HOH . 
C 3 HOH A 145 446 148 HOH HOH . 
C 3 HOH A 146 447 149 HOH HOH . 
C 3 HOH A 147 448 150 HOH HOH . 
C 3 HOH A 148 449 151 HOH HOH . 
C 3 HOH A 149 450 152 HOH HOH . 
C 3 HOH A 150 451 153 HOH HOH . 
C 3 HOH A 151 452 154 HOH HOH . 
C 3 HOH A 152 453 155 HOH HOH . 
C 3 HOH A 153 454 156 HOH HOH . 
C 3 HOH A 154 455 157 HOH HOH . 
C 3 HOH A 155 456 158 HOH HOH . 
C 3 HOH A 156 457 159 HOH HOH . 
C 3 HOH A 157 458 160 HOH HOH . 
C 3 HOH A 158 459 161 HOH HOH . 
C 3 HOH A 159 460 162 HOH HOH . 
C 3 HOH A 160 461 163 HOH HOH . 
C 3 HOH A 161 462 164 HOH HOH . 
C 3 HOH A 162 463 165 HOH HOH . 
C 3 HOH A 163 464 166 HOH HOH . 
C 3 HOH A 164 465 167 HOH HOH . 
C 3 HOH A 165 466 168 HOH HOH . 
C 3 HOH A 166 467 169 HOH HOH . 
C 3 HOH A 167 468 170 HOH HOH . 
C 3 HOH A 168 469 171 HOH HOH . 
C 3 HOH A 169 470 172 HOH HOH . 
C 3 HOH A 170 471 173 HOH HOH . 
C 3 HOH A 171 472 174 HOH HOH . 
C 3 HOH A 172 473 175 HOH HOH . 
C 3 HOH A 173 474 176 HOH HOH . 
C 3 HOH A 174 475 177 HOH HOH . 
C 3 HOH A 175 476 178 HOH HOH . 
C 3 HOH A 176 477 179 HOH HOH . 
C 3 HOH A 177 478 180 HOH HOH . 
C 3 HOH A 178 479 181 HOH HOH . 
C 3 HOH A 179 480 182 HOH HOH . 
C 3 HOH A 180 481 183 HOH HOH . 
C 3 HOH A 181 482 184 HOH HOH . 
C 3 HOH A 182 483 185 HOH HOH . 
C 3 HOH A 183 484 186 HOH HOH . 
C 3 HOH A 184 485 187 HOH HOH . 
C 3 HOH A 185 486 188 HOH HOH . 
C 3 HOH A 186 487 189 HOH HOH . 
C 3 HOH A 187 488 190 HOH HOH . 
C 3 HOH A 188 489 191 HOH HOH . 
C 3 HOH A 189 490 192 HOH HOH . 
C 3 HOH A 190 491 193 HOH HOH . 
C 3 HOH A 191 492 194 HOH HOH . 
C 3 HOH A 192 493 195 HOH HOH . 
C 3 HOH A 193 494 196 HOH HOH . 
C 3 HOH A 194 495 197 HOH HOH . 
C 3 HOH A 195 496 198 HOH HOH . 
C 3 HOH A 196 497 199 HOH HOH . 
C 3 HOH A 197 498 200 HOH HOH . 
C 3 HOH A 198 499 201 HOH HOH . 
C 3 HOH A 199 500 202 HOH HOH . 
C 3 HOH A 200 501 203 HOH HOH . 
C 3 HOH A 201 502 204 HOH HOH . 
C 3 HOH A 202 503 205 HOH HOH . 
C 3 HOH A 203 504 206 HOH HOH . 
C 3 HOH A 204 505 207 HOH HOH . 
C 3 HOH A 205 506 208 HOH HOH . 
C 3 HOH A 206 507 209 HOH HOH . 
C 3 HOH A 207 508 210 HOH HOH . 
C 3 HOH A 208 509 211 HOH HOH . 
C 3 HOH A 209 510 212 HOH HOH . 
C 3 HOH A 210 511 213 HOH HOH . 
C 3 HOH A 211 512 214 HOH HOH . 
C 3 HOH A 212 513 215 HOH HOH . 
C 3 HOH A 213 514 216 HOH HOH . 
C 3 HOH A 214 515 217 HOH HOH . 
C 3 HOH A 215 516 219 HOH HOH . 
C 3 HOH A 216 517 220 HOH HOH . 
C 3 HOH A 217 518 221 HOH HOH . 
C 3 HOH A 218 519 222 HOH HOH . 
C 3 HOH A 219 520 223 HOH HOH . 
C 3 HOH A 220 521 224 HOH HOH . 
C 3 HOH A 221 522 225 HOH HOH . 
C 3 HOH A 222 523 226 HOH HOH . 
C 3 HOH A 223 524 227 HOH HOH . 
C 3 HOH A 224 525 228 HOH HOH . 
C 3 HOH A 225 526 229 HOH HOH . 
C 3 HOH A 226 527 230 HOH HOH . 
C 3 HOH A 227 528 231 HOH HOH . 
C 3 HOH A 228 529 232 HOH HOH . 
C 3 HOH A 229 530 233 HOH HOH . 
C 3 HOH A 230 531 234 HOH HOH . 
C 3 HOH A 231 532 235 HOH HOH . 
C 3 HOH A 232 533 236 HOH HOH . 
C 3 HOH A 233 534 237 HOH HOH . 
C 3 HOH A 234 535 238 HOH HOH . 
C 3 HOH A 235 536 239 HOH HOH . 
C 3 HOH A 236 537 240 HOH HOH . 
C 3 HOH A 237 538 241 HOH HOH . 
C 3 HOH A 238 539 242 HOH HOH . 
C 3 HOH A 239 540 243 HOH HOH . 
C 3 HOH A 240 541 244 HOH HOH . 
C 3 HOH A 241 542 245 HOH HOH . 
C 3 HOH A 242 543 246 HOH HOH . 
C 3 HOH A 243 544 249 HOH HOH . 
C 3 HOH A 244 545 251 HOH HOH . 
C 3 HOH A 245 546 254 HOH HOH . 
C 3 HOH A 246 547 255 HOH HOH . 
C 3 HOH A 247 548 256 HOH HOH . 
C 3 HOH A 248 549 257 HOH HOH . 
C 3 HOH A 249 550 258 HOH HOH . 
C 3 HOH A 250 551 259 HOH HOH . 
C 3 HOH A 251 552 260 HOH HOH . 
C 3 HOH A 252 553 261 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RIP . . . B 2 33.992 43.163 35.73 1 12.09 ? C1 RIP 301 A 1 
HETATM 2 C C2 RIP . . . B 2 34.354 44.331 36.638 1 13.35 ? C2 RIP 301 A 1 
HETATM 3 C C3 RIP . . . B 2 35.59 45.058 36.109 1 12.8 ? C3 RIP 301 A 1 
HETATM 4 C C4 RIP . . . B 2 36.721 44.043 35.978 1 12.71 ? C4 RIP 301 A 1 
HETATM 5 C C5 RIP . . . B 2 36.266 42.895 35.094 1 11.71 ? C5 RIP 301 A 1 
HETATM 6 O O1 RIP . . . B 2 32.938 42.418 36.283 1 13.73 ? O1 RIP 301 A 1 
HETATM 7 O O2 RIP . . . B 2 33.293 45.22 36.85 1 13.94 ? O2 RIP 301 A 1 
HETATM 8 O O3 RIP . . . B 2 35.308 45.714 34.879 1 9 ? O3 RIP 301 A 1 
HETATM 9 O O4 RIP . . . B 2 37.859 44.607 35.383 1 15.82 ? O4 RIP 301 A 1 
HETATM 10 O O5 RIP . . . B 2 35.108 42.309 35.656 1 11.95 ? O5 RIP 301 A 1 
#
_model_server_stats.io_time_ms              75 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           347 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           10 
#